fam53b (fam53b,LOC104942014)


Basic Information

Item Value
gene id fam53b
gene name fam53b,LOC104942014
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 11743207 ~ 11758918 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789368.1
TCTTGGACAGTAGTGCACTGGGGCTATGTTGTAGTTTGCAGGAGCTACATTGAGCAGGACGTGAATTGAACTACTCGCCTTGCTTCCTGTCTGACGCCTTGTTCTGGTTTTCTGCTAAAACAAAACTCAACATGGTCCAGCGAAACTAACCCGTTGCCCGGTGTTGTTGGAGATAAAAGGCGCTCACCGTGATGCTTGTTTGGGCCGAGGAGTGAAGCACATTCCTGAAGGAGTTGAGGGCTGCTGTCTTAAGCTTATGAGAAACCAGCCGGCTCACACCATGCCCGTCAAGATGGCCGCCACTTTTTCTTGCCCTCACTGGAACGGCTTGGGACAAGGATGTTTTTTGCCATGGTGATCATTTTCAAGAAAACACTGGAAAAGAAGGGCGCCGACGATGTAGCATCCAAAAGTACAGATTTGGGCCCGTTCCAGGCACAGACCATGAGCCAGGGGACTGCACTTTTCTCTTGTGGACTCATGGAGACAAGCCGGTGGCGTAAGTTGGGTCACAGCTGTGCCATACAGCAGAGGCCAGTTGGGACCAGCTTGGAGAGCCTGTGGGACGTCCTGCCTGAGGTGCACAAGAGTTCTACCCACTGGGATTGGGATGTTGGCTCCACTTCGACCACAATCACCAGCTTGTTGCATGACCTCAGTCTGACTGAGGCTGCGTCGTCGCACTCCACTGCACCTCCTAGCAAGCGGCAGTGCCGGTCCCTTTCTTGCTCAGATGAGCTCGGTAGTTGCCGGTCTACCTGGCGCCCTCAGGGCTCTCGGGTGTGGACAACGGTGGAGAAGAGAAGGTGCCACAGCGGGGGCAGCGTCCAGCGCGGCGGCGTTGGGAACGCGCCGCTCGGCTTCCCGGCCATGCAGCGCAGCTCCAGCTTCAGCCTGCCTGCCCGCTCCAACACCCTGGAGCTGCCCTGCTTCTCCCAGCATATCCCCTGCCCCTCTGCCTTCACCGGTCTGACGCCCACATCCTCCATGATCCTGTCCTCTAAGCCCTCAGCACAGCCCCTCTACCTCTCTCATGAACAGATCTGCCTCCCTGAGCCTCGTGGACCCTCGCCGCCCAGCTCCCCTGACTCCACACCAGAGCTGGAGCGCCGTGGTGGACCAGGGGGTCTTGCCCGTAGTCGCTCACAGCCGTGCGTCCTCAACGACAAAAAGACCGGTGTGAAGCGCAGAAGACCAgctgacacacagaaacagaggcCTTCTCTGGACCTCGCCAAGATGACCCAGAAACTTCGGAATTTCCACAGCCTTAGCTGCCCTGGAATCACAGGAGAAGACCGCTATGCATCAAGCCAGGCCCTCCCCACTCTCAGGAGCACCGCTCAGTGTGACACTGACGACTCGTCGGCAAATGAACGCGACCTGGACGTTCAGCATCAGACCAAAGAAGGCGAGAACGTGCCGTCAGACGCCGCCATCGAGGAGGTGGACTGGATGCCAGGGACGACCAATGGGAAGGACAATCAGCCTCTGTGGGCGGGGCTGTGTAGCATGAGGAAGGACGTGTATCAGCTTGGAGGCGAGCTCGACATTGAGCAAATTGAGAGGAACTGAGCTGGACCGTCTTCCTCCCGGGGGACGCTAATTTAGGGGACTGAAAGTTTATCACCAGGTGGTACAGTAAACAGTACTGATAAGTCTTAAGGACAAAGCAAGTGGCAAGCTAATGTAGTAAGCGTTTCagcacttgtttttttttctaaaggagAGATTGAGCAGCAGCTTTGTGGGCTGAACACTCATTTTTGGAGGTTTTGTGTAGTTAGAAGCTAAACCCACACTGTGCATTATCTCAACTGTGTCTCAGGAGAACAAGGAAGTCGGGGAGGACAGATTCGGGTGGAAATAATAGAACTGATAAATATAAGAATGATATTAGAGTTGGCTCAGAGACTGGGGTCTTTTTACATTTATCTGTAACCCTGATCACCTTCATTGTACTACATTTGGAGAGAATTGACAGCAGGTTTGTATAAATTCTCTGCACTAGAAAATGTCCATTCCTCTGACGTGCTTCAATAGTACGATGGACAGAAATGAAGACTACTTTAAGAGCTACTGTTAGTAAAGCCCCTTTCACTCTTACTGAGCAacaagctacacacacacacacacacacacacacacacacacacacacacacacataaagtatATTGAAGAGCTTAACATTTCACACAGTAACATCCAGCTTCTCTCTGAGATCTATGCTCCCGTTTGTGTGAGAGAAACTTTGTAATAGggttaatattttctttttacgaTTTGTAACTACAAAGGTATGTAAAACATGAGCATATttctatacaaataaaacacagttttaaatgtgtaa
>XM_039789369.1
TCTTGGACAGTAGTGCACTGGGGCTATGTTGTAGTTTGCAGGAGCTACATTGAGCAGGACGTGAATTGAACTACTCGCCTTGCTTCCTGTCTGACGCCTTGTTCTGGTTTTCTGCTAAAACAAAACTCAACATGGTCCAGCGAAACTAACCCGTTGCCCGGTGTTGTTGGAGATAAAAGGCGCTCACCGTGATGCTTCCTCAGGTATAAAGACTGAACTGGCTGACATACAATCCAACCGATTCTGCAACGTTTGGGCCGAGGAGTGAAGCACATTCCTGAAGGAGTTGAGGGCTGCTGTCTTAAGCTTATGAGAAACCAGCCGGCTCACACCATGCCCGTCAAGATGGCCGCCACTTTTTCTTGCCCTCACTGGAACGGCTTGGGACAAGGATGTTTTTTGCCATGGTGATCATTTTCAAGAAAACACTGGAAAAGAAGGGCGCCGACGATGTAGCATCCAAAAGTACAGATTTGGGCCCGTTCCAGGCACAGACCATGAGCCAGGGGACTGCACTTTTCTCTTGTGGACTCATGGAGACAAGCCGGTGGCGTAAGTTGGGTCACAGCTGTGCCATACAGCAGAGGCCAGTTGGGACCAGCTTGGAGAGCCTGTGGGACGTCCTGCCTGAGGTGCACAAGAGTTCTACCCACTGGGATTGGGATGTTGGCTCCACTTCGACCACAATCACCAGCTTGTTGCATGACCTCAGTCTGACTGAGGCTGCGTCGTCGCACTCCACTGCACCTCCTAGCAAGCGGCAGTGCCGGTCCCTTTCTTGCTCAGATGAGCTCGGTAGTTGCCGGTCTACCTGGCGCCCTCAGGGCTCTCGGGTGTGGACAACGGTGGAGAAGAGAAGGTGCCACAGCGGGGGCAGCGTCCAGCGCGGCGGCGTTGGGAACGCGCCGCTCGGCTTCCCGGCCATGCAGCGCAGCTCCAGCTTCAGCCTGCCTGCCCGCTCCAACACCCTGGAGCTGCCCTGCTTCTCCCAGCATATCCCCTGCCCCTCTGCCTTCACCGGTCTGACGCCCACATCCTCCATGATCCTGTCCTCTAAGCCCTCAGCACAGCCCCTCTACCTCTCTCATGAACAGATCTGCCTCCCTGAGCCTCGTGGACCCTCGCCGCCCAGCTCCCCTGACTCCACACCAGAGCTGGAGCGCCGTGGTGGACCAGGGGGTCTTGCCCGTAGTCGCTCACAGCCGTGCGTCCTCAACGACAAAAAGACCGGTGTGAAGCGCAGAAGACCAgctgacacacagaaacagaggcCTTCTCTGGACCTCGCCAAGATGACCCAGAAACTTCGGAATTTCCACAGCCTTAGCTGCCCTGGAATCACAGGAGAAGACCGCTATGCATCAAGCCAGGCCCTCCCCACTCTCAGGAGCACCGCTCAGTGTGACACTGACGACTCGTCGGCAAATGAACGCGACCTGGACGTTCAGCATCAGACCAAAGAAGGCGAGAACGTGCCGTCAGACGCCGCCATCGAGGAGGTGGACTGGATGCCAGGGACGACCAATGGGAAGGACAATCAGCCTCTGTGGGCGGGGCTGTGTAGCATGAGGAAGGACGTGTATCAGCTTGGAGGCGAGCTCGACATTGAGCAAATTGAGAGGAACTGAGCTGGACCGTCTTCCTCCCGGGGGACGCTAATTTAGGGGACTGAAAGTTTATCACCAGGTGGTACAGTAAACAGTACTGATAAGTCTTAAGGACAAAGCAAGTGGCAAGCTAATGTAGTAAGCGTTTCagcacttgtttttttttctaaaggagAGATTGAGCAGCAGCTTTGTGGGCTGAACACTCATTTTTGGAGGTTTTGTGTAGTTAGAAGCTAAACCCACACTGTGCATTATCTCAACTGTGTCTCAGGAGAACAAGGAAGTCGGGGAGGACAGATTCGGGTGGAAATAATAGAACTGATAAATATAAGAATGATATTAGAGTTGGCTCAGAGACTGGGGTCTTTTTACATTTATCTGTAACCCTGATCACCTTCATTGTACTACATTTGGAGAGAATTGACAGCAGGTTTGTATAAATTCTCTGCACTAGAAAATGTCCATTCCTCTGACGTGCTTCAATAGTACGATGGACAGAAATGAAGACTACTTTAAGAGCTACTGTTAGTAAAGCCCCTTTCACTCTTACTGAGCAacaagctacacacacacacacacacacacacacacacacacacacacacacacataaagtatATTGAAGAGCTTAACATTTCACACAGTAACATCCAGCTTCTCTCTGAGATCTATGCTCCCGTTTGTGTGAGAGAAACTTTGTAATAGggttaatattttctttttacgaTTTGTAACTACAAAGGTATGTAAAACATGAGCATATttctatacaaataaaacacagttttaaatgtgtaa

Function

symbol description
fam53b Acts upstream of or within several processes, including axon extension; fin regeneration; and protein import into nucleus. Located in nucleus. Is expressed in Rohon-Beard neurons; head; regenerating fin; trigeminal sensory neurons; and trunk. Orthologous to human FAM53B (family with sequence similarity 53 member B).

NR:

description
PREDICTED: protein FAM53B isoform X1

GO:

id name namespace
GO:0031101 fin regeneration biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789368.1 False 2355 mRNA 0.52 5 11743207 11758918
XM_039789369.1 True 2408 mRNA 0.51 6 11743207 11758918

Neighbor

gene id symbol gene type direction distance location
hpdl hpdl coding upstream 3698 11736977 ~ 11739509 (+)
ctbp2l ctbp2,LOC104925227,LOC100698659,LOC105926449,LOC107387783,LOC102290675,LOC103381637,LOC103150461,LOC101467118,LOC102209184,LOC102797539,LOC103481571 coding upstream 24764 11620641 ~ 11718443 (+)
mmp21 mmp21 coding upstream 155577 11583189 ~ 11587630 (+)
uros uros coding upstream 160093 11579205 ~ 11583114 (+)
dhx32a dhx32 coding upstream 165575 11570717 ~ 11577632 (+)
LOC120551790 hnrnpab,LOC103359197,LOC100707314 coding downstream 32469 11791387 ~ 11792699 (+)
oat oat coding downstream 35196 11794114 ~ 11802996 (+)
LOC120551667 chst15 coding downstream 89367 11848285 ~ 11889417 (+)
LOC120550610 chst15 coding downstream 139196 11898114 ~ 11919380 (+)
cpxm2 cpxm2 coding downstream 174883 11933801 ~ 11962517 (+)
G211666 zranb1,LOC104942016 non-coding upstream 7956 11733627 ~ 11735251 (+)
G211665 NA non-coding upstream 15781 11725141 ~ 11727426 (+)
LOC120550877 NA non-coding upstream 285646 11453221 ~ 11457561 (+)
G211417 NA non-coding upstream 662797 11080115 ~ 11080410 (+)
LOC120550777 NA non-coding upstream 796564 10944929 ~ 10946643 (+)
G211706 NA non-coding downstream 62886 11821804 ~ 11822046 (+)
G211710 NA non-coding downstream 80083 11839001 ~ 11839311 (+)
G211711 NA non-coding downstream 80626 11839544 ~ 11839743 (+)
G211762 acadsb non-coding downstream 276638 12035556 ~ 12036431 (+)
G211778 NA non-coding downstream 337114 12096032 ~ 12097836 (+)
LOC120550876 fam196a other upstream 342629 11363355 ~ 11400578 (+)
chac2 chac2,LOC102792373 other upstream 665200 11073477 ~ 11078007 (+)
cript cript other upstream 815981 10922423 ~ 10927226 (+)
kcng3 LOC104951029,LOC104923031 other upstream 831109 10819058 ~ 10912098 (+)
G211777 NA other downstream 328767 12087685 ~ 12088135 (+)
LOC120551485 adamts14,LOC103367006 other downstream 791659 12550577 ~ 12599464 (+)
LOC120551603 zmiz1,LOC102192508,LOC102310819 other downstream 961917 12720835 ~ 12827609 (+)
LOC120550681 comtd1 other downstream 1401058 13159976 ~ 13166392 (+)
zgc:153981 LOC104943448,LOC101465490,LOC103355374,LOC100701713,LOC104930939 other downstream 1422077 13180995 ~ 13184797 (+)

Expression


Co-expression Network