LOC120550777


Basic Information

Item Value
gene id LOC120550777
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10944929 ~ 10946643 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637787.1
ATTTGTCTTCACTTACCGTGGCAGTGAATTTTGCTAGTGCCCAGAAGAAAACTGTGTGGGATTGGGATATTCGGTTTAAAAGGTTATAGGAAAGACTTCctgctgctgtttggtgctgaaaCAGCCTCCAAGATGCTTGAGAAGTGGGACACCTCATTCAAGCCCAAGGTCATCAAAGAGGCCAAACAACTGACTCCGAACAACTGAGCTGTGCCGACTTCTAAAAGCTGCTGAGAAACTTGCAGAGAACGATGAAACGGTGACATCGATTCTATGCTGCTTCTTCTCTTGCCACCCAAATCTGGACGGAAGAGGACCAAAATAAGTCAAAGTGATGCAGTTGACAAAATGGTGCACTTTCATAAGtcatGCTGCAGCATCAATGAATATCTGCAGGAAAGGGAGAGTAAACAACCATACATCCTTGCCATTGGCCGAACCCAGAAGGCGATTGATACCTTCTACATCGCCGTTGACAAACAGCTCATCCTCTGCCAAGCCACCAGCTCGTTGGGTGCTTTTGATGAACTGTTTAAATCCCACTACGTGTTCAACTTGTCTTATGATGAGTCCCTGGTCCATTTCCACACTTTTCTGCAGACAACGGTCTACAACATTGATGTTACCACAACAGATGAGTCTCCAAGAGTTTGTGAGTTGCGGGCGAAACTTTTGAATGACATATGaatatgtttaaatgtttcataTGCCAAGCAgtgcatgctaccagccagtGCCTAATAACTCATTTGCGAATCTGTCACAGTTTCTATCCAAGCACTAGGTTTAAGTTAGTTTGTGCACAAGATCATTGTAGGTGtcacttttcaacattttcaggttttaaaaAGCATTTAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637787.1 True 860 lncRNA 0.43 4 10944929 10946643

Neighbor

gene id symbol gene type direction distance location
ldb3b ldb3,LOC103370407,LOC100707522,LOC108248204,LOC101168991,LOC106516631 coding upstream 244165 10687293 ~ 10700764 (+)
opn4b opn4,LOC103371172 coding upstream 262298 10658853 ~ 10682631 (+)
myoz1b NA coding upstream 383599 10552741 ~ 10561330 (+)
synpo2lb LOC104964751 coding upstream 395318 10537342 ~ 10549611 (+)
LOC120551199 NA coding upstream 439169 10499483 ~ 10505760 (+)
msh2 msh2 coding downstream 5544 10952187 ~ 10962659 (+)
LOC120550886 LOC103359664,LOC101486147,LOC102308455 coding downstream 174568 11121211 ~ 11141363 (+)
LOC120550888 LOC104941389 coding downstream 196741 11143384 ~ 11147383 (+)
LOC120550580 NA coding downstream 295956 11242599 ~ 11244396 (+)
c21h10orf90 NA coding downstream 530321 11476964 ~ 11494645 (+)
LOC120550775 NA non-coding upstream 664 10937601 ~ 10944265 (+)
G211370 mta3 non-coding upstream 58978 10878917 ~ 10885951 (+)
G211349 NA non-coding upstream 126654 10817269 ~ 10818275 (+)
G211356 NA non-coding upstream 129726 10814744 ~ 10815203 (+)
G211327 NA non-coding upstream 261682 10683043 ~ 10683247 (+)
G211417 NA non-coding downstream 133472 11080115 ~ 11080410 (+)
LOC120550877 NA non-coding downstream 506578 11453221 ~ 11457561 (+)
G211665 NA non-coding downstream 778498 11725141 ~ 11727426 (+)
G211666 zranb1,LOC104942016 non-coding downstream 786984 11733627 ~ 11735251 (+)
G211706 NA non-coding downstream 875161 11821804 ~ 11822046 (+)
cript cript other upstream 17703 10922423 ~ 10927226 (+)
kcng3 LOC104951029,LOC104923031 other upstream 32831 10819058 ~ 10912098 (+)
LOC120551799 LOC104923123,LOC104951035,LOC103481543,LOC106904276 other upstream 37585 10902694 ~ 10907344 (+)
G211354 six3,LOC104922638,LOC103370415 other upstream 140957 10801340 ~ 10803972 (+)
G211336 NA other upstream 219370 10723533 ~ 10725559 (+)
chac2 chac2,LOC102792373 other downstream 126834 11073477 ~ 11078007 (+)
LOC120550876 fam196a other downstream 416712 11363355 ~ 11400578 (+)
G211777 NA other downstream 1141042 12087685 ~ 12088135 (+)
LOC120551485 adamts14,LOC103367006 other downstream 1603934 12550577 ~ 12599464 (+)
LOC120551603 zmiz1,LOC102192508,LOC102310819 other downstream 1774192 12720835 ~ 12827609 (+)

Expression


Co-expression Network