LOC120551338


Basic Information

Item Value
gene id LOC120551338
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 4085324 ~ 4087838 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637865.1
GTTTCCTCAAATCAATTATTTAAATGCTTTTTTAGATTGTTTTGTCAATTGCTGTTTCCATGGTCATGAAGACACTATTGATCTCAAAATGTCTTTTACATCAACATGgtcaaaaaaaaggaaattaggcaactccatctgctgaggaagatcGAGGGCGAAAAGCTCCAGGACTGATAATGAGAGGACCTTCTGGAATGCAGATAAATCCCATCTTCCAGCCggaggagaggagcagggagTTTTTCTTTCGTTTGGACCCCAGTTGGATGAGATGTGAATGGAACCGGTGACCCAGTTTGTCCTGATTGACGGAGCAGATTTTCTCCCTGAGCTCTCCTCTGCTGACTCAGTGTCTGTCCTCCACATGTCTAACAAAACATCCGCACATCATTTTATAATTCGGTATCCTCCTTACGTAATATGTGACCCATTTTTACTTCTGTTGGCTCTGCTCACGGCTGACAGTTGGTTGGCACCGACCATCTcttctgtttctttttaaattttggCAACTAGGCCCCTCTGGCTTTCAGATGTCTTCTGCACAGGGCTAACTGCTGCAGGTCTCCACATAAGAAGACTTTCAGTGACCTTCATGGTTCACTTCGGACCCATTTATTATGAGTCAGCGTTACTGGAAAGAACCATGGGCTAAGTTGATTTTGCCTTTTCGGGAAACTCTTGGAGATTTTCCTCTAACTGCCACTGTTGTACCACACAAACTATCCATAAATCAGCATTGTCAGCTCTCAAAGTATTCTCTGACTCATATGTTTTGTCAGAAAGTGCAGCGCTGGAGCCCAAAGATACCAAACTGAATGCCAAAAATGTTCTGCTTGTTATCGTTGCCATAGTTAACTGAACTTTGATTAAGAGTTACTTCAGTtatatgcttttttttgcaCCTATGTTTGCATAAAATATgtgattttttgtg

Function

GO:

id name namespace
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637865.1 True 940 lncRNA 0.42 2 4085324 4087838

Neighbor

gene id symbol gene type direction distance location
LOC120551336 htra1 coding upstream 1822 4049249 ~ 4083502 (+)
atoh1c NA coding upstream 141902 3942381 ~ 3943422 (+)
LOC120550572 NA coding upstream 253123 3829315 ~ 3832201 (+)
LOC120551587 NA coding upstream 397547 3670590 ~ 3687777 (+)
LOC120551583 NA coding upstream 464145 3587079 ~ 3621179 (+)
asb3 LOC103361130,LOC104944901 coding downstream 19382 4107220 ~ 4118771 (+)
abca5 LOC103361128 coding downstream 31014 4118852 ~ 4160298 (+)
chmp6b chmp6,LOC103374447,LOC100705156,LOC101486168 coding downstream 83840 4171678 ~ 4183117 (+)
baiap2b baiap2,LOC101465701,LOC102783223 coding downstream 107935 4195773 ~ 4307447 (+)
LOC120551740 NA coding downstream 320994 4408832 ~ 4411773 (+)
G209650 NA non-coding upstream 42638 4021661 ~ 4042686 (+)
LOC120550570 NA non-coding upstream 294649 3787973 ~ 3790675 (+)
G209508 NA non-coding upstream 561558 3469012 ~ 3523766 (+)
G209501 NA non-coding upstream 737224 3347898 ~ 3348100 (+)
G209382 NA non-coding upstream 884190 3110699 ~ 3201134 (+)
G209684 NA non-coding downstream 95735 4183573 ~ 4186720 (+)
G209685 NA non-coding downstream 100255 4188093 ~ 4188482 (+)
G209686 NA non-coding downstream 104076 4191914 ~ 4192168 (+)
G209706 NA non-coding downstream 334223 4422061 ~ 4423044 (+)
G209714 NA non-coding downstream 365326 4453164 ~ 4453398 (+)
LOC120551345 plekha1,LOC106957628 other upstream 57042 3998373 ~ 4028282 (+)
LOC120550571 NA other upstream 262073 3818853 ~ 3823251 (+)
G209514 NA other upstream 438327 3646009 ~ 3646997 (+)
G209344 NA other upstream 1251650 2671275 ~ 2833674 (+)
LOC120551576 lrch1,LOC106582244 other upstream 1722965 2344281 ~ 2362359 (+)
map2k6 LOC103367941,LOC105926483,LOC102221885,LOC100697345,LOC103150707 other downstream 586399 4674237 ~ 4716583 (+)
LOC120550763 LOC100696279,LOC101467831,LOC107093968 other downstream 1503497 5591335 ~ 5687896 (+)
LOC120551158 NA other downstream 1727398 5815236 ~ 6259659 (+)
kctd2 kctd2,LOC102796578,LOC107089511,LOC103371831,LOC103398851,LOC106521991 other downstream 1995264 6083102 ~ 6092738 (+)
LOC120551157 NA other downstream 2132031 6219869 ~ 6270445 (+)

Expression


Co-expression Network