LOC120551440


Basic Information

Item Value
gene id LOC120551440
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 1071580 ~ 1083434 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637877.1
TCTGTCCTGTCGGGCTCAGAGATCAGGGGCTTCCTCCGAGACTCAACAACCTGCAGACTGTCCTCAGAGACCGCCATCACATCCAGCAACCATCCAGCCAGCCGACCAATAACAGCAGGCAGACGCTTCTGGAACGGATTGCCAAGgggaaaattgtaaaaaaaaaaccccgaaGAAGATGAGATGAAGTATGAACCAGACCCCGGCTCATCCAAAGATGACCAGGATGGATTAGGGCCATAATGGACTGACTACCACGCTGGCCACACTACCTGTTTCCAGGAAGTTGAGGACCCaaaagcagagagcaggcaggcaggcaacaTTTGAAGTGGAAGATTTATTAGTCCAtaaaacaaagtacaaataaacaaaaggGAGTCCTGAAAGCGGCAGGCAAAAAAACTAATCCAGAGAGTAGAAAAAACCAAAACAGGAAATCCAAAAAACAAGAgcagaataaaaaacagaatctAGAGAACAAAGGAAATCCAAGGAGCAAAGAACCGGACACAAACTGACTCTGGGAGACACGACAGCCTACATCATGCGCTGTGGAACTCTAGATGGATGGACACCTGTGGAGAAGGCCAAGGTCAAAAAAGCCTTGATTACCAAATCCTGCATGAGGACCGCAAAGACATGGACAATATACATTCTTGAAAGTGGCACACCAGAGAGGTGGACAGATGTTGAGTTCAGATTTTCAGAAGTTCTTGCTGCAAATGTTCAGCGTCAGTAAATGTAAActgaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637877.1 True 756 lncRNA 0.46 4 1071580 1083434

Neighbor

gene id symbol gene type direction distance location
LOC120551421 NA coding upstream 21970 1043672 ~ 1049610 (+)
LOC120551430 atad1 coding upstream 52690 1015297 ~ 1018890 (+)
LOC120551425 NA coding upstream 88842 977736 ~ 982738 (+)
LOC120551418 NA coding upstream 113947 953123 ~ 957633 (+)
LOC120551416 NA coding upstream 160238 901360 ~ 911342 (+)
ptenb pten coding downstream 97611 1181045 ~ 1193221 (+)
LOC120551397 NA coding downstream 214593 1298027 ~ 1303083 (+)
LOC120551407 NA coding downstream 295217 1378651 ~ 1380831 (+)
LOC120551423 NA coding downstream 301929 1385363 ~ 1398958 (+)
LOC120551406 NA coding downstream 330354 1413788 ~ 1427061 (+)
G208850 NA non-coding upstream 13152 1056886 ~ 1058428 (+)
G208784 NA non-coding upstream 21952 1039125 ~ 1049628 (+)
G208840 NA non-coding upstream 55844 950663 ~ 1015736 (+)
G208835 NA non-coding upstream 221353 847867 ~ 850227 (+)
G208785 NA non-coding upstream 264477 788508 ~ 807103 (+)
G208853 minpp1 non-coding downstream 15881 1099315 ~ 1100848 (+)
LOC120551437 NA non-coding downstream 115488 1198922 ~ 1200173 (+)
G208864 NA non-coding downstream 125989 1209423 ~ 1226685 (+)
G208885 NA non-coding downstream 228622 1312056 ~ 1335340 (+)
G208886 NA non-coding downstream 245704 1329138 ~ 1383544 (+)
G208851 minpp1,LOC102795090 other upstream 12140 1058842 ~ 1059440 (+)
LOC120551422 NA other upstream 32211 1027301 ~ 1039369 (+)
G208768 NA other upstream 416360 654899 ~ 655220 (+)
LOC120551434 LOC101484734,LOC101161619,LOC103361136 other upstream 424358 584120 ~ 647222 (+)
LOC120551420 NA other upstream 449811 614865 ~ 621769 (+)
G208852 minpp1 other downstream 7113 1090547 ~ 1093597 (+)
lipf lipa other downstream 108861 1192295 ~ 1255677 (+)
G208867 NA other downstream 121156 1204590 ~ 1205248 (+)
stambpl1 NA other downstream 229767 1313201 ~ 1328029 (+)
G208777 NA other downstream 347075 1430509 ~ 1493181 (+)

Expression


Co-expression Network