XLOC_005002


Basic Information

Item Value
gene id XLOC_005002
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 48328866 ~ 48330894 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011038
CAAGAAGACACTTACAATCCACTCATCCTGTGATCATCTGTAGAAGCATTGTCTTTTCACTGTTTCAACAATGTGGCATGGAATAAAGCAGCATTCTCCCACAATCTCACGTGTTGGAAAGAGGGCGGTGTGAGGACAGAATACAGGAGAATGTAAGAAGTGCATGATAAAGATGAGTGGCAGATAAATGTAATGTGCTGTAATGTGACGCTGCGTGAATTCCTTCAGTGGCTGGAGATGTTTATCGTAAAGGGCGTTTCTTACTgtatatctggagctgtctgggTCCTAAAGCCTGCCACACAGCACTGCAAACAAAGAAACAACACCATGCATTATGCAGAAGCTAAATAAAGCAAGCATCAGATAATAACACATTATGTAGACATATTTTTGTAATATGGTAATGAGATTCAGGGGTTTATATGAAGTATAGGTTCATGCAAAATCTACTATCTTACTCCATTCCTTTGTTTTTTGGGTTGAAATATGAACTGAACATAGTTTTACatgttgcttgttttattttgcttcaaTGGATATATTGCAacataaaatctaaaaacatttgTTGATCATATCTAAGATTT
>TCONS_00011037
CAAGAAGACACTTACAATCCACTCATCCTGTGATCATCTGTAGAAGCATTGTCTTTTCACTGTTTCAACAATGTGGCATGGAATAAAGCAGCATTCTCCCACAATCTCACGTGTTGGAAAGAGGGCGGTGTGAGGACAGAATATAAAGGGCGTTTCTTACTgtatatctggagctgtctgggTCCTAAAGCCTGCCACACAGCACTGCAAACAAAGAAACAACACCATGCATTATGCAGAAGCTAAATAAAGCAAGCATCAGATAATAACACATTATGTAGACATATTTTTGTAATATGGTAATGAGATTCAGGGGTTTATATGAAGTATAGGTTCATGCAAAATCTACTATCTTACTCCATTCCTTTGTTTTTTGGGTTGAAATATGAACTGAACATAGTTTTACatgttgcttgttttattttgcttcaaTGGATATATTGCAacataaaatctaaaaacatttgTTGATCATATCTAAGATTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011038 False 590 lncRNA 0.37 4 48328866 48330894
TCONS_00011037 True 486 lncRNA 0.36 3 48328866 48330894

Neighbor

gene id symbol gene type direction distance location
XLOC_005001 anapc16 coding upstream 1267 48319221 ~ 48327599 (+)
XLOC_005000 ppa1a coding upstream 61000 48241841 ~ 48267866 (+)
XLOC_004999 ndr2 coding upstream 88353 48204891 ~ 48240513 (+)
XLOC_004998 CABZ01074994.1 coding upstream 368955 47945664 ~ 47959911 (+)
XLOC_004997 tbata coding upstream 399808 47907277 ~ 47929058 (+)
XLOC_005003 ddit4 coding downstream 9239 48340133 ~ 48342259 (+)
XLOC_005004 scd coding downstream 59821 48390715 ~ 48404672 (+)
XLOC_005005 NA coding downstream 83633 48414527 ~ 48419991 (+)
XLOC_005006 arhgap44 coding downstream 149738 48480632 ~ 48538302 (+)
XLOC_005007 NA coding downstream 217200 48548094 ~ 48573203 (+)
XLOC_004992 NA non-coding upstream 718536 47606871 ~ 47610330 (+)
XLOC_004991 NA non-coding upstream 748300 47580022 ~ 47580566 (+)
XLOC_004984 NA non-coding upstream 1292446 47035721 ~ 47036420 (+)
XLOC_004973 CABZ01111725.1 non-coding upstream 1725311 46603441 ~ 46603555 (+)
XLOC_004970 NA non-coding upstream 1785677 46542671 ~ 46543189 (+)
XLOC_005010 NA non-coding downstream 331897 48662791 ~ 48664445 (+)
XLOC_005018 NA non-coding downstream 557027 48887921 ~ 48896104 (+)
XLOC_005021 CABZ01075114.1 non-coding downstream 702829 49033723 ~ 49038796 (+)

Expression


Co-expression Network