si:dkey-225n22.4 (LOC104949920,LOC103365391)


Basic Information

Item Value
gene id si:dkey-225n22.4
gene name LOC104949920,LOC103365391
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 1355257 ~ 1448275 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU294158
cttttccttaaagctttagtgcgtagctgtttaatattaataaatgtcCATTACATTGAAGCCATTGCcagatgagttgctacaaagctaattaaggctaccagctccacacaactctctctggatttctcagtaggactatgttcagaagattgtggcgtctggcgactttcccgtgcagaaacacgagtgaagataatgacctcttctgaagagtccatcatgtttttttaatcctccgtgtcctccttggctactagcaactgacagttctgtcaatcaattaagtgtttaaagtgatggttcggagtaattcaccctagggtcctttgcaccatgacctcgag
>XM_039789599.1
GTGGCATTCATCATTGCCTACTAGCAGCTGAAAGAGAAAGCCAGGTTGGACAGGACCAAGGTAGACCGCTCTCCTACGGAGCCATGTTGCTGTGGTCATTATGGAGTGCAATATTGCTACTGACCCCCCTGAAGGCTGCAGAAGAGGAAGATGTCCGTGCAGGCTGCAGCACAGCTGTAAATGACCTGGTCTATATTGTTGATGGCTCATGGAGTGTTGGCTTCTCTGACTTTGACACGGCCAAGCAGTGGCTTATCAACATCACCAGCCAATTTGACATCAGTTCCCACTACACACAGGTGGCTGTGATTCAGTACAGCGACACTCCTCGCCTGGAGATTCCTCTGGGGAAACACCAGGGTGGAGGGGAGCTCATCCAGGCCATACAGAGCATCACCTACCTGGGAGGAAACACGCAGACTGGCAGGGCCATCAAGTTTGCCGTGGACCACGTCTTCTCTTCCTCCCAAAGATCCAGCCAGGTCAAGAACCGCATAGCTGTGGTGGTTACTGATGGCAAATCTCAGGATGATGTGGTGGATGCCAGTATGGAGGCACGAGCTCAGGGCATTACAGTATTCGCTGTTGGAGTTGGCAGTGAGATCACCACATCGGAGCTTGTATCCATTGCCAATAGACCATCATCCACCTATGTCCTGTATGCCGAAGATTACACCACCATTGACCGTATTCGAGACTCCATGGAGCAAAAGCTCTGTGAAGAGTCTGTGTGTCCAACACGAATCCCGGTGGCATCTCGTGATGAGAAAGGCTTTGAGCTGATGCTGGGCATGAACATTCAGAAGAAGGCCAAGGAGATCCCTGGCTCTCTGATTTCTGAGGCAGCCTACGCACTGACTGTCTCCACAGACATTACTGAGAATACCAGGGATATTTTCCCAGAAGGCCTCCCTCCATCCTATGTGTTCGTAGCAACCCTGCGTGTAAAGGGGTCTTCGAGCGTGCTGACTTTTGACCTTTGGAGGGTGCTGTCTAAAGATAAGGAGATCCAGGCTGCAGTGACACTAAATGGGAAGGACAAAACTGTCATCTtcactaccaccaccaccagtatTACAGAAAAGGAGCAGAGAGTCACCTTTAAAGCCGGCTTTCAGACTCTGTATGATGGAAAGTGGCATCAGCTCAAACTCCTGGTAAGACCACGCCAGGTCTCCAGTTTTCTTGACGATCAGCCTCTCCAGGAGATAATGATGAAACCGGTGGAGCCGATTTACATCAACGGGGAGACGCAGGTTGCTAAAAGGCGAGGAACAGACATCACTGTGCCTGTGGAGCTTCAGAAGCTGCGTCTGTACTGTGATCCTCatcagagtgagagagaaacagCTTGTGAGATTTACTCTGTGGATGATGAAAGGTGTCCTCTGAATCGAACAGCCACAGTGGAGGATGAAGACTGCAACTGTGCCATCAGTCCACAAGGGCCGCGCGGCCTGCCAGGACCCatgGGTTTCCGAGGCGAGAAAGGGAGGGAAGGACCATCAGGACCTGATGGTAAGCCTGGTAAAGATGGGAAACCTGGGGAATCCGGCCCTCCTGGGTTACCAGGGATGAAGGGTGAAGGTGGCCCCGCAGGACTAAGAGGGGAGCCCGGTCTAAAAGGTAACAAGggagacagaggggaacCAGGCTTATCAGGAGAACCAGGACCCCCAGGACCCAAGGGTCTTCATGGTGAGAGAGGCGAGCTAGGGCCTCCAGGACAAGCTGGACCAATGGGGGAGCCAGGACTGCCAGGCACTGGCGGACAAATTGGGCCACCAGGACCAAAGGGAGAGAAGGGATTCAGCGGTACTGCTGGAGCAGCTGGAGCTCAAGGCGCCCCGGGTGTCCAGGGACCTCCTGGCGAAGCTGGCCCAAAGGGACATCAGGGAGAGAGAGGCTTGCTTGGGCCACAAGGACCACCTGGACTAAATGGAACTCTGGGAATCCAGGGCCCCCGGGGGCCGCCCGGAGAGATTGGCCAAGATGGTCCCAAGgGGAAGGGTGGAGACCCAGGGGTCACTGGTCCTATTGGTCCACCAGGCCAGAAGGGCTCAACAGGGGAGTCAGGTTTTCCAGGGCTGCCGGGTGCCATGGGGATGCCGGGGTTCAAAGGTCACAAGGGCGAGAGAGGTGAGACGGGCTCTAAAGGACACCAGGGGGAGCCAGGCAGAGATGGAGATCCAGGGACTCCTGGTGTACCTGGTGAAGTGGGACCCATGGGAAGGAAAGGAGAGGCAGGAGTGACCGGTGACATAGGCCACAGGGGCCCTGAAGGAAAGAAAGGGGACATGGGCCACATGGGTGCTGTTGGCCCCAGGGGATTTCCTGGTCATGACGGGATTCCGGGCCAACCAGGCCAACCAGGATATCCTGGGAAACCTGGCAAGCCTCCCTCAGATGAACATCTTCTAAAGCTCTGCACTGATGTTTTGCGTAATCAACTCCCAGCACTGCTCCAGACCCTGGCCCCCCCAGCTAGGTGTGAACCATGCCAGAGCATGAAGGGACCCGCGGGCGAGCCAGGAGCCCCAGGACCCAAAGGCTCCATGGGCACTCCAGGCTACCCTGGCAGGAGTGGCACTCCCGGTTACCCAGGACCTTCTGGAATGCAGGGCCCTGCAGGCCTCAAAGGTGACACAGGACCGAGAGGGCTCAAAGGCAGCAAAGGAGAAGGTTACCGTGGACCTCCTGGACCCCCTGGACAGCCAGGGATTCAAGGTCCTCGTGGCTTCGATGGAATCGGCCATCCAGGAAACCAGGGAATTCCTGGAAAACCAGGACCACCAGGAGATCCTGGTAAAAGGGGCAACCCAGGGCTCCCAGGGGTTTGTGATATTTCCATGTGTTATCAGACGTACAACATCAGGGAACATTACAGCAAAGGACCCAACGTCTGATGACATAGCAGCGTGGGAGAGGCTGCTGTTGAACACACCAAAGTGATTCAAGGAAATGTACTGTATCACTGATACACAGATATGTGTGACTGTTGACTCCTTTatgacaaagtgtgtgtggAGAACAGCTGCAATGGAAGCAGAAATAACCCTGTTAGTTGAGTTAAATTGAAATAAGTGAACTAGGCAGGGCATTGATTTATGATTATGGATGGATTCATAATCAAAGACGGTCAGCAGGCTAGTGACCTAGATACCAGGCTAACATGGCTACTTTACACTTTAAACtgagttgtgttgttgttttttgaaatAGCAAGACAAACTAGGATttgaaataacataaaaaaaaatagctacCTCCTCTTTTACCTGAGCTACTCTATGTTTGAGTCAATGTTACTGAAGGCTTTGCTATCAAGACAGGATGCTTACCGGCTAACATCACCAGCAGTcccatcacattttttacacAACACAGATGGACAGAAAACAGACATATCTCCtcaagaaaatataaaatataaatgaataaaaaaaaaagaaaaagaagaggtcAATGCATTTCAAAAAGCCTAATAAAACCTCCTATGTTGGctaatgaaaaaagaaatgagaTCTACTGACAACTGGGCAAAACTCATGTAGACCAAGTCttctttaattaattaatacctATTCATTTATTCACGACTATGAgtcatataaaaaagaaaaatatatataacatataactGCATAATATTATCAGAAGGGTATAATTAGCACCAGTGGTGGacgaagtattcagatccttttccttaaagctttagtgcgtagctgtttaatattaataaatgtcCATTACATTGAAGCCATTGCcagatgagttgctacaaagctaattaaggctaccagctccacacaact

Function

NR:

description
collagen alpha-1(XXI) chain-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU294158 False 347 lncRNA 0.42 1 1355257 1355603
XM_039789599.1 True 3815 mRNA 0.51 32 1355488 1448275

Neighbor

gene id symbol gene type direction distance location
LOC120551939 NA coding downstream 22847 1321438 ~ 1332410 (-)
LOC120551945 NA coding downstream 155047 1198609 ~ 1200210 (-)
vstm2a vstm2a coding downstream 953431 294311 ~ 401826 (-)
ift74 ift74 coding upstream 59461 1507736 ~ 1536190 (-)
kcnh2b kcnh2,LOC102205662,LOC101467662 coding upstream 374768 1823043 ~ 2201660 (-)
zeb1b zeb1,LOC102790219 coding upstream 1353291 2801566 ~ 2860283 (-)
map3k8 map3k8 coding upstream 1764282 3212557 ~ 3220234 (-)
trnag-ucc_41 NA coding upstream 1861224 3309499 ~ 3309570 (-)
G217330 NA non-coding downstream 754 1354225 ~ 1354503 (-)
G217267 NA non-coding downstream 490457 864570 ~ 864800 (-)
G217259 NA non-coding downstream 569684 785271 ~ 785573 (-)
G217247 NA non-coding downstream 660833 693504 ~ 694424 (-)
G217241 NA non-coding downstream 772324 582699 ~ 582933 (-)
G217421 NA non-coding upstream 385938 1834213 ~ 1887417 (-)
LOC120552172 LOC106511981,LOC106522237,LOC106533251 non-coding upstream 468933 1917208 ~ 1918027 (-)
LOC120552173 NA non-coding upstream 621090 2069365 ~ 2070418 (-)
G217435 NA non-coding upstream 725025 2173300 ~ 2173556 (-)
G217445 NA non-coding upstream 761753 2210028 ~ 2210237 (-)
LOC120552169 LOC102294047,LOC102205018 other upstream 209897 1658172 ~ 1811130 (-)
scospondin sspo,LOC104950179 other upstream 766436 2214711 ~ 2419065 (-)
svila svil other upstream 1540651 2988926 ~ 3136214 (-)
LOC120552696 NA other upstream 1867143 3315418 ~ 3343705 (-)
f3a NA other upstream 1989527 3437802 ~ 3456044 (-)

Expression


Co-expression Network