G217579 (arhgap12)


Basic Information

Item Value
gene id G217579
gene name arhgap12
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 2746786 ~ 2758060 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU294482
agtcctgcattgaaaatgttacttaagtaaaagtatgtaagtataatcaggaaaatgtacttaaagtattaaaagtaaaattactggATGCAGACAAAcactcacattttagaaactggaaaccatTAATGGTCGAATCCTTTCAGCTTtacttgtaggcctgtatattgttgggtagtttagtttataataaaacattattattctattaattacatgtgttttgtgtataaaaattttaatgtgtaaagtaactagtaactaaagctgtaacagatgaatgtagtggagtcaaaagtacaatatttctctctgaaatgtagcggagtagaagtagaaagtggcatgaagagaaaagactAGTTAAGTACATGTACCACATAtttgtactgaagtacagtacttgagtaaatgtacttagttgcaTTCCACCAGTGGATGAGAGGAACCAAATGCAATGCAGGCAGAGAGTTGAGGAGATGAGGAGAAGGGCGTGTTTGTATGTGGATGCAGGTGAAAGTAGGAAGGTGGTGATAAGTGCGGTGTGGTGCGGTGCAAGCTGAAATACTAACGGTCGAGGGGTGCTTAGGAGATGAGGGGCAGGAGTCAGAGTCTGGAGAGCTCTGCTTGGGCACCGGAGCACACTCCTTGTCGTTGAGGTCTAAGACGTAGGTGCTGTGTCTCCACTTGGTGAGGACGATGGGATCCTGCTGCTTCCTCTCCAGACTGCGACTTTTGGGAACCTCGCCGGACTGAGGGGACATATTGTACTGCAGAGACAAGAGATGAGAGCTACAGGTTTAAACTCCACAGAGTTCTTCTAGCACACCCTGCAGTATCTTCTCTCTCCCCTACCCTACCTCTCCTTTCACCGTCCACAGCACCATTGGACAAAGGGACTTCTCTTACAGCCCAGGCATCTTCTTCAACGATCCACTGCTCCACTGAATGTAGCCATGTCCGCACTACTGTCCACACACTGTGAGAATGGACTGCTACATTCTGATCAGCTCTCCAGATTAGCAGGTAAAGAGCCTGGAATAGTCTGTCACCAGGAGTACAACTCAAACTCGTGTGTGAGCTCGCCAGACACTTATCCCCTTACAATAACAGGAGTATGTGTGAATGCAGAGCTTCATCCTGTCTGTGGCAGTCGGGTAAACACAGAGGGGCGTGACAAAGCGGCGCTACCAGGGAATGAGACTGGGCTGCACACCCTGCTGCGTGCTGCTATTGGCTGGGGGTGACACACCCACTTGGGGCCCAAAGGCTCTTTTCTGACGTCCCACACAAAATATAAGAAGAGTAAATCCAGGCAGAGGGCAGAGCCcctgcagatacagacaccacCACACGCTTGCTAGTGGGTCGTAAGGGATGATTGAGGGCCACGCCAACATTGGCACCTGGTAGATCAACCAATGGCACGCTAGCAAAAGGTGTGCAAAAGTATTTTTAGAAAATGTTCCGATCCCCATGCCAAATGAACTATTTAACAGCCATTGGCAGGAGCACAGCCTGTTATTTATGGTAGTGTGATTATCTTTCT
>TU294483
agtcctgcattgaaaatgttacttaagtaaaagtatgtaagtataatcaggaaaatgtacttaaagtattaaaagtaaaattactggATGCAGACAAAcactcacattttagaaactggaaaccatTAATGGTCGAATCCTTTCAGCTTtacttgtaggcctgtatattgttgggtagtttagtttataataaaacattattattctattaattacatgtgttttgtgtataaaaattttaatgtgtaaagtaactagtaactaaagctgtaacagatgaatgtagtggagtcaaaagtacaatatttctctctgaaatgtagcggagtagaagtagaaagtggcatgaagagaaaagactAGTTAAGTACATGTACCACATAtttgtactgaagtacagtacttgagtaaatgtacttagttgcaTTCCACCAGTGGATGAGAGGAACCAAATGCAATGCAGGCAGAGAGTTGAGGAGATGAGGAGAAGGGCGTGTTTGTATGTGGATGCAGGTGAAAGTAGGAAGGTGGTGATAAGTGCGGTGTGGTGCGGTGCAAGCTGAAATACTAACGGTCGAGGGGTGCTTAGGAGATGAGGGGCAGGAGTCAGAGTCTGGAGAGCTCTGCTTGGGCACCGGAGCACACTCCTTGTCGTTGAGGTCTAAGACGTAGGTGCTGTGTCTCCACTTGGTGAGGACGATGGGATCCTGCTGCTTCCTCTCCAGACTGCGACTTTTGGGAACCTCGCCGGACTGAGGGGACATATTGTACTTGGGCAGTTCCCATTCTGACCTGGATCCATCGGCGCTGTAGTAGTAGGGCCGACCTTGTTCATCCACATGTTTTATCCACTGTGAACAAAAACACTAGTCAGGatccaaaaaaaagagaaaactaaCAACACAGCGTTACAACGTAAATTCCCCTTGGGGGATCAATGAACTGTCTCTTCGTTTTTTTGCAGGGATGAATTTAACATAACATGCAGAAGTTGAAATTAGAGTATCAAAGACCCGCCCCTGGACGACTGTGATGGAGTTGGCTGGTTAATCGATAGAGCGCACCTTCTCCTGTGTGTATTCCGAGACGTAGAGAGTGTGTCCATGTTCATCCAGCTCCTCAGACCAGCCTCTCGGGGAGGACCCGTACTGGCTGTCAGACTGACTCGAGTTGGTGCTGGGACAGTTTTCCTCGGAGGACAGCGGCTGTGgaggaccTCACTCTCCGCTGTGCCCTGGCTGTCTCCTCGGATACTGCTGGTGCTGCCGCTGGCGTCCCTGGTGCGCGGGGGCTTCCAGGTGCGCTCTCCGCTGGCGCGGTTGTAGTAGAAATGCCTGCCGCTCAGGTCTTTGTGGGTCTCCCAGTCGCCCAAGATGTGGAGAGGGGAGCTGGAGGGGACGGGCGGCAAGCTGGACTGAGAGATCTTCAACTCCTGCAGGTTGGTGTAGACCGGCGAGTCGGACCGGCCCGGACCTGTAGGTGAT

Function

symbol description
arhgap12 Predicted to enable GTPase activator activity. Involved in several processes, including morphogenesis of an epithelial sheet; negative regulation of small GTPase mediated signal transduction; and phagocytosis, engulfment. Located in phagocytic cup.

NR:

description
PREDICTED: rho GTPase-activating protein 12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU294482 True 1549 lncRNA 0.46 2 2753606 2758060
TU294483 False 1484 lncRNA 0.48 4 2746786 2758060

Neighbor

gene id symbol gene type direction distance location
kcnh2b kcnh2,LOC102205662,LOC101467662 coding downstream 545126 1823043 ~ 2201660 (-)
ift74 ift74 coding downstream 1210596 1507736 ~ 1536190 (-)
LOC120551939 NA coding downstream 1414376 1321438 ~ 1332410 (-)
LOC120551945 NA coding downstream 1546576 1198609 ~ 1200210 (-)
vstm2a vstm2a coding downstream 2344960 294311 ~ 401826 (-)
zeb1b zeb1,LOC102790219 coding upstream 43506 2801566 ~ 2860283 (-)
map3k8 map3k8 coding upstream 454497 3212557 ~ 3220234 (-)
trnag-ucc_41 NA coding upstream 551439 3309499 ~ 3309570 (-)
LOC120552550 NA coding upstream 587696 3345756 ~ 3399840 (-)
cnn3a cnn3,LOC102798192 coding upstream 752712 3510772 ~ 3543793 (-)
G217520 gfod1,LOC101463621,LOC100711398,LOC102788772,LOC102233768,LOC106945177 non-coding downstream 125206 2610600 ~ 2621580 (-)
G217528 LOC103361595 non-coding downstream 192462 2541535 ~ 2554324 (-)
G217522 LOC103361595,LOC103377102,LOC100706669 non-coding downstream 231141 2481005 ~ 2515645 (-)
LOC120552008 NA non-coding downstream 465598 2273323 ~ 2281188 (-)
LOC120552007 NA non-coding downstream 505909 2237870 ~ 2240877 (-)
G217584 NA non-coding upstream 3296 2761356 ~ 2769101 (-)
LOC120552330 NA non-coding upstream 185863 2943923 ~ 2968161 (-)
G217636 NA non-coding upstream 223738 2981798 ~ 2982010 (-)
G217638 NA non-coding upstream 250214 3008274 ~ 3011592 (-)
G217714 NA non-coding upstream 672593 3430653 ~ 3436326 (-)
scospondin sspo,LOC104950179 other downstream 327721 2214711 ~ 2419065 (-)
LOC120552169 LOC102294047,LOC102205018 other downstream 935656 1658172 ~ 1811130 (-)
si:dkey-225n22.4 LOC104949920,LOC103365391 other downstream 1298511 1355257 ~ 1448275 (-)
svila svil other upstream 230866 2988926 ~ 3136214 (-)
LOC120552696 NA other upstream 557358 3315418 ~ 3343705 (-)
f3a NA other upstream 679742 3437802 ~ 3456044 (-)
G217780 chchd7,LOC102799933 other upstream 934892 3692952 ~ 3704357 (-)
G217837 NA other upstream 1177950 3936010 ~ 3941329 (-)

Expression


Co-expression Network