chchd7 (chchd7,LOC102799933)


Basic Information

Item Value
gene id chchd7
gene name chchd7,LOC102799933
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 3670420 ~ 3704375 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU294764
ACAACGAGAGTGGAGTTGTCTTGAGCATGACGGGGAGGTTGTAGCCTATGGCTTGTGTAGCTTTATTAGTTAGCGTTAGCCACATGTAGCCTATGCTAACGTATAGCTGTTCACTAGCTTTTGAAGCAGGACGCTCGCTAGCATTCCAAGGGGATATAGGCTAAATTACAGCATATGCTACTTTTTTAAATAGCTATTATTAGCTGTTATTTTTGGGagcatattttcaaaaaaactggACCGTCTTCACTGGTGTTGGATATTGGGCGCATCCACAAGTCATTAGACTACCGCTGGATACAAGTTGGTAGGCTATTTCAAAAGATCCAAATGGATAAAAAAGCAGGAAAGGTTCGGAATCAGGACATCAACCCATGCATCGAGgAAAGCGATGCCTCCCAGAAGTGTTTGAATGCCTACAACTACGATAAGAGCATGTGTTCGGCGTACTTCCAAAGCTATAAGAGCTGTAGGAAATACTGGCACAACATCATGGTGCAGAGGAGAAGAGACGGCGTGAGGCCCGACATGCCCACCGCTGCAGAGAGGCAGGAGATGCTCGCCACTGTCGGGGGCAAACCGTACTGAGAGTCGGCAGGGTGACGCAGAGACACTGGGAGGACATTCTGCCGATGCCAAGGACTGACCTGTCCTCAGGCTGTCTGGGTGTGACCATCTGGAACGGGTCTCTCCTGAAATGAAAGGGATAGAGAGGGAAGTCGCAGAGCGACGAGATATAAGATGCATTATTTATTGAGGTTAATAACAACGTGACGTGAAGTGACACGACATGAAAATGACCCGTCTGAAATAGGCGGCCAGCGGCAGGCTTTTATACCAACAGTCTGCATCCGCTGAGTCAGACTACTGCTGCCCCAAATCAGTTAAAGAGAAGCTTCGCCACCAGACACCAGGCTCTTCACTGTGGCAGCCTGTCCTGGTCAAGCAGCACCACAGCTGCACAAAAATATAGAAACTCATAAGGCCTGATATCTATCAAATAGATTTTGAGACGTATTAAGGACCTGCAGACACCCTGCGATTTCACTTCTTATGTACTTCATGTTGTCAATAGTTGTAAAAACTGCT
>XM_039789981.1
CTGTCAGTTGTCGGTGACGGTGCGGGTGATTTTCCTGGTGCGCTGTTGCAACAACGAGAGTGGAGTTGTCTTGAGCATGACGGGGAGGTTGTAGCCTATGGCTTGTGTAGCTTTATTAGTTAGCGTTAGCCACATGTAGCCTATGCTAACGTATAGCTGTTCACTAGCTTTTGAAGCAGGACGCTCGCTAGCATTCCAAGGGGATATAGGCTAAATTACAGCATATGCTACTTTTTTAAATAGCTATTATTAGCTGTTATTTTTGGGagcatattttcaaaaaaactggACCGTCTTCACTGGTGTTGGATATTGGGCGCATCCACAAGTCATTAGACTACCGCTGGATACAAGTTGGTAGGCTATTTCAAAAGATCCAAATGGATAAAAAAGCAGGAAAGGTTCGGAATCAGGACATCAACCCATGCATCGAGgAAAGCGATGCCTCCCAGAAGTGTTTGAATGCCTACAACTACGATAAGAGCATGTGTTCGGCGTACTTCCAAAGCTATAAGAGCTGTAGGAAATACTGGCACAACATCATGGTGCAGAGGAGAAGAGACGGCGTGAGGCCCGACATGCCCACCGCTGCAGAGAGGCAGGAGATGCTCGCCACTGTCGGGGGCAAACCGTACTGAGAGTCGGCAGGGTGACGCAGAGACACTGGGAGGACATTCTGCCGATGCCAAGGACTGACCTGTCCTCAGGCTGTCTGGGTGTGACCATCTGGAACGGGTCTCTCCTGAAATGAAAGGGATAGAGAGGGAAGTCGCAGAGCGACGAGATATAAGATGCATTATTTATTGAGGTTAATAACAACGTGACGTGAAGTGACACGACATGAAAATGACCCGTCTGAAATAGGCGGCCAGCGGCAGGCTTTTATACCAACAGTCTGCATCCGCTGAGTCAGACTACTGCTGCCCCAAATCAGTTAAAGAGAAGCTTCGCCACCAGACACCAGGCTCTTCACTGTGGCAGCCTGTCCTGGTCAAGCAGCACCACAGCTGCACAAAAATATAGAAACTCATAAGGCCTGATATCTATCAAATAGATTTTGAGACGTATTAAGGACCTGCAGACACCCTGCGATTTCACTTCTTATGTACTTCATGTTGTCAATAGTTGTAAAAACTGCTGTAATTGAAATAAACAATGtatttaacaatta
>XM_039789982.1
CAGAGGATGAGGAGGGCATGCTGCTCTGCAGCTCCATCAGATCCAAATGGATAAAAAAGCAGGAAAGGTTCGGAATCAGGACATCAACCCATGCATCGAGgAAAGCGATGCCTCCCAGAAGTGTTTGAATGCCTACAACTACGATAAGAGCATGTGTTCGGCGTACTTCCAAAGCTATAAGAGCTGTAGGAAATACTGGCACAACATCATGGTGCAGAGGAGAAGAGACGGCGTGAGGCCCGACATGCCCACCGCTGCAGAGAGGCAGGAGATGCTCGCCACTGTCGGGGGCAAACCGTACTGAGAGTCGGCAGGGTGACGCAGAGACACTGGGAGGACATTCTGCCGATGCCAAGGACTGACCTGTCCTCAGGCTGTCTGGGTGTGACCATCTGGAACGGGTCTCTCCTGAAATGAAAGGGATAGAGAGGGAAGTCGCAGAGCGACGAGATATAAGATGCATTATTTATTGAGGTTAATAACAACGTGACGTGAAGTGACACGACATGAAAATGACCCGTCTGAAATAGGCGGCCAGCGGCAGGCTTTTATACCAACAGTCTGCATCCGCTGAGTCAGACTACTGCTGCCCCAAATCAGTTAAAGAGAAGCTTCGCCACCAGACACCAGGCTCTTCACTGTGGCAGCCTGTCCTGGTCAAGCAGCACCACAGCTGCACAAAAATATAGAAACTCATAAGGCCTGATATCTATCAAATAGATTTTGAGACGTATTAAGGACCTGCAGACACCCTGCGATTTCACTTCTTATGTACTTCATGTTGTCAATAGTTGTAAAAACTGCTGTAATTGAAATAAACAATGtatttaacaatta
>XM_039789983.1
CCCCGGTGCTGGGGAACGGCTGCAGGCACACTTGGCAGATCCAAATGGATAAAAAAGCAGGAAAGGTTCGGAATCAGGACATCAACCCATGCATCGAGgAAAGCGATGCCTCCCAGAAGTGTTTGAATGCCTACAACTACGATAAGAGCATGTGTTCGGCGTACTTCCAAAGCTATAAGAGCTGTAGGAAATACTGGCACAACATCATGGTGCAGAGGAGAAGAGACGGCGTGAGGCCCGACATGCCCACCGCTGCAGAGAGGCAGGAGATGCTCGCCACTGTCGGGGGCAAACCGTACTGAGAGTCGGCAGGGTGACGCAGAGACACTGGGAGGACATTCTGCCGATGCCAAGGACTGACCTGTCCTCAGGCTGTCTGGGTGTGACCATCTGGAACGGGTCTCTCCTGAAATGAAAGGGATAGAGAGGGAAGTCGCAGAGCGACGAGATATAAGATGCATTATTTATTGAGGTTAATAACAACGTGACGTGAAGTGACACGACATGAAAATGACCCGTCTGAAATAGGCGGCCAGCGGCAGGCTTTTATACCAACAGTCTGCATCCGCTGAGTCAGACTACTGCTGCCCCAAATCAGTTAAAGAGAAGCTTCGCCACCAGACACCAGGCTCTTCACTGTGGCAGCCTGTCCTGGTCAAGCAGCACCACAGCTGCACAAAAATATAGAAACTCATAAGGCCTGATATCTATCAAATAGATTTTGAGACGTATTAAGGACCTGCAGACACCCTGCGATTTCACTTCTTATGTACTTCATGTTGTCAATAGTTGTAAAAACTGCTGTAATTGAAATAAACAATGtatttaacaatta

Function

symbol description
chchd7 Orthologous to human CHCHD7 (coiled-coil-helix-coiled-coil-helix domain containing 7).

NR:

description
coiled-coil-helix-coiled-coil-helix domain-containing protein 7 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU294764 False 1089 TUCP 0.47 4 3692962 3704343
XM_039789981.1 True 1171 mRNA 0.47 4 3692912 3704375
XM_039789982.1 False 837 mRNA 0.49 4 3670420 3704375
XM_039789983.1 False 835 mRNA 0.49 4 3670954 3704375

Neighbor

gene id symbol gene type direction distance location
steap2 steap2 coding upstream 32387 3570272 ~ 3638033 (+)
abcd3a abcd3 coding upstream 236799 3401968 ~ 3433621 (+)
jcada kiaa1462 coding upstream 363583 3282595 ~ 3306837 (+)
znf438 znf438,LOC104952784 coding upstream 734851 2878512 ~ 2935569 (+)
arhgap12b arhgap12 coding upstream 897734 2679636 ~ 2772686 (+)
arhgef4 arhgef4 coding downstream 9936 3714311 ~ 3873302 (+)
LOC120552545 NA coding downstream 196576 3900951 ~ 3935126 (+)
trnas-gcu_20 NA coding downstream 359619 4063994 ~ 4064075 (+)
LOC120552069 NA coding downstream 517534 4221909 ~ 4250306 (+)
LOC120552080 LOC107732049,LOC100535932 coding downstream 608976 4313351 ~ 4323124 (+)
G217769 NA non-coding upstream 3927 3664861 ~ 3666493 (+)
G217768 NA non-coding upstream 5657 3664357 ~ 3664763 (+)
G217765 NA non-coding upstream 10106 3658336 ~ 3660314 (+)
G217761 NA non-coding upstream 23925 3646243 ~ 3646495 (+)
G217716 NA non-coding upstream 208772 3460771 ~ 3461648 (+)
LOC120552544 NA non-coding downstream 649 3705024 ~ 3708719 (+)
G217788 NA non-coding downstream 122181 3826556 ~ 3827058 (+)
G217795 NA non-coding downstream 236421 3940796 ~ 3941325 (+)
G217925 NA non-coding downstream 698674 4403049 ~ 4403369 (+)
G217927 NA non-coding downstream 732048 4436423 ~ 4436735 (+)
G217723 cnn3 other upstream 126635 3495450 ~ 3543785 (+)
LOC120552392 mtpap other upstream 436598 3220615 ~ 3233822 (+)
G217606 svil other upstream 648778 3006283 ~ 3021642 (+)
G217377 NA other upstream 1995020 1669162 ~ 1675400 (+)
zcchc2 zcchc2 other upstream 2165205 1462750 ~ 1505215 (+)
ppp1r17 NA other downstream 551673 4256048 ~ 4261598 (+)
trdmt1 LOC104946219,LOC101070638 other downstream 807338 4511713 ~ 4522706 (+)
LOC120552660 NA other downstream 3656231 7360606 ~ 7373347 (+)
LOC120552265 LOC101478037,LOC102216221,LOC100695799 other downstream 4818924 8523299 ~ 8596356 (+)
G218441 LOC101478037,LOC102216221,LOC100695799 other downstream 4846408 8550783 ~ 8606578 (+)

Expression


Co-expression Network