LOC120552501


Basic Information

Item Value
gene id LOC120552501
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 7591697 ~ 7593836 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU295494
gccctctGGGCTccgacccacacacagacgtgcacgAGCACTGCTGTGTCgctgcttcagagcagagcagagaaagAACCGCAATTTTACTTCATGTCCTCATTTTCCGGCTTGCTGACAAAGTGAGTCAGTGCCAGGATATCCAGATGACCCACTGTGGCAGCAGATTCTTTGAGAGGCCCATTCTGAGGATTAGGAGGCAGTGGGCTCTGAACCCGTGACCTGTGCTGTTTATTTACCTTTTCCTGGTTTAGGTCACTGTGACTTACTGCTGTACTGTTGTGTTAACATCCCACTTCCATTTGGATCCGTTCATTTCATTGTGCTACATATGTATGTcagggtttccgcggggtcttaaaaagtcttacattttaaaataaaaatgtaaggccttaaaaagtcttaaatttgcttAAGTATTGTGTCTAGGTCTTACAtttcctacgtccatgtaacGTTACCTCTATTGCTCATTAAAATGCTCCAGCAgcgcacatttttttttatactccgtgg
>TU295495
CCTGACACACCTGTACACGAGACCGACAGAAAACGAGCAGAAGGCCGTCACACTATTGTTATGGTCATATTTAATGTGTTTCTTTGTCAATGCCTCTAATGCTGACGTTTAAAATACAGCACTAATTTACCTTGATCTTCTGTAGCCTAGCTGCATCTCGCACCTGCACGCGCCTGCTCTCTAGTGAGATGGCTGGAACTGATTCTCTTTACAGTGTAAATGGAATGCAGCTCATTGCAGTCAGCTTGCTGACAAAGTGAGTCAGTGCCAGGATATCCAGATGACCCACTGTGGCAGCAGATTCTTTGAGAGGCCCATTCTGAGGATTAGGAGGCAGTGGGCTCTGAACCCGTGACCTGTGCTGTTTATTTACCTTTTCCTGGTTTAGGTCACTGTGACTTACTGCTGTACTGTTGTGTTAACATCCCACTTCCATTTGGATCCGTTCATTTCATTGTGCTACATATGTATGTcagggtttccgcggggtcttaaaaagtcttacattttaaaataaaaatgtaaggccttaaaaagtcttaaatttgcttAAGTATTGTGTCTAGGTCTTACAtttcctacgtccatgtaacGTTACCTCTATTGCTCATTAAAATGCTCCAGCAgcgcacatttttttttatactccgtgg
>XR_005638018.1
gccctctGGGCTccgacccacacacagacgtgcacgAGCACTGCTGTGTCgctgcttcagagcagagcagagaaagAACCGCAATTTTACTTCATGTCCTCATTTTCCGGCTTGCTGACAAAGTGAGTCAGTGCCAGGATATCCAGATGACCCACTGTGGCAGCAGATTCTTTGAGAGGCCCATTCTGAGGATTAGGAGGCAGTGGGCTCTGAACCCGTGACCTGTGCTGTTTATTTACCTTTTCCTGGTTTAGGTCACTGTGACTTACTGCTGTACTGTTGTGTTAACATCCCACTTCCATTTGGATCCGTTCATTTCATTGTGCTACATATGTATGTcagggtttccgcggggtcttaaaaagtcttacattttaaaataaaaatgtaaggccttaaaaagtcttaaatttgcttAAGTATTGTGTCTAGGTCTTACAtttcctacgtccatgtaacGTTACCTCTATTGCTCATTAAAATGCTCCAGCAgcgcacatttttttttatactc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU295494 False 519 lncRNA 0.45 2 7591697 7593335
TU295495 True 653 lncRNA 0.43 2 7591697 7593836
XR_005638018.1 False 514 lncRNA 0.44 2 7591702 7593335

Neighbor

gene id symbol gene type direction distance location
fzd8a fzd8,LOC104927254,LOC104956203 coding downstream 148998 7439940 ~ 7442699 (-)
cul2 cul2,LOC102787920 coding downstream 231609 7343067 ~ 7360088 (-)
trnaw-cca_34 NA coding downstream 249802 7341824 ~ 7341895 (-)
trnaw-cca_33 NA coding downstream 288930 7302696 ~ 7302767 (-)
trnaw-cca_32 NA coding downstream 290557 7301069 ~ 7301140 (-)
pfkpa LOC101472402,LOC100702375,LOC102201923,LOC102790125,LOC104924699 coding upstream 268096 7861932 ~ 7888999 (-)
LOC120552408 wdr37,LOC102292542,LOC101470374 coding upstream 709987 8303823 ~ 8326855 (-)
LOC120552407 cpne3,LOC104924704,LOC102292005,LOC108248831 coding upstream 740951 8334787 ~ 8347251 (-)
LOC120552411 LOC103369038,LOC104941959,LOC108248835 coding upstream 754120 8347956 ~ 8361373 (-)
LOC120552414 LOC101468454,LOC102290369,LOC102196333,LOC103482264,LOC106914574 coding upstream 769638 8363474 ~ 8372337 (-)
G218327 NA non-coding downstream 9941 7581557 ~ 7581756 (-)
G218199 NA non-coding downstream 1136731 6426008 ~ 6454966 (-)
G218177 NA non-coding downstream 1337721 6253146 ~ 6253976 (-)
G218176 NA non-coding downstream 1362704 6228775 ~ 6228993 (-)
G218166 NA non-coding downstream 1580632 6010337 ~ 6011065 (-)
G218332 NA non-coding upstream 39735 7633571 ~ 7634213 (-)
G218335 NA non-coding upstream 86314 7680150 ~ 7680411 (-)
G218347 NA non-coding upstream 146437 7740273 ~ 7740524 (-)
G218349 NA non-coding upstream 149137 7742973 ~ 7743325 (-)
LOC120552532 NA non-coding upstream 150999 7744835 ~ 7746432 (-)
G218085 LOC107687935 other downstream 1891121 5700229 ~ 5700576 (-)
G218019 NA other downstream 2554993 5027505 ~ 5036704 (-)
G217837 NA other downstream 3650368 3936010 ~ 3941329 (-)
G217780 chchd7,LOC102799933 other downstream 3887340 3692952 ~ 3704357 (-)
f3a NA other downstream 4135653 3437802 ~ 3456044 (-)
G218453 adarb2 other upstream 601093 8194929 ~ 8195879 (-)
G218471 NA other upstream 836628 8430464 ~ 8430930 (-)
prkdc prkdc other upstream 1203945 8797781 ~ 8851726 (-)
LOC120551928 LOC104943218,LOC103369878,LOC100710535,LOC102301415,LOC101469805 other upstream 1363573 8957409 ~ 8970638 (-)
cngb3.1 LOC103363254,LOC102786718,LOC108428960,LOC104948783 other upstream 2239626 9833462 ~ 9848241 (-)

Expression


Co-expression Network