G218441 (LOC101478037,LOC102216221,LOC100695799)


Basic Information

Item Value
gene id G218441
gene name LOC101478037,LOC102216221,LOC100695799
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8550783 ~ 8606578 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU295656
CCGAAAGGCActtccttttatatatgtcaatgggcaCTTCCGGATAACTTCCTAGTTGttgaagtttatttaaaaaacgaATCGCTTATTAACAAAACATGACAATATTACCAGAAATCTGTTTACTTCTTGCTAACCTGGTTTCTCCTGTTGTATCGAAGACTGATCCCCGTCGATACATAATTCCCCCTGCCTAAACCTGAACCAAACCTGATCCCTAATCACGGAGGAGGCGCTCCTAGACTGACTGTCAGTATATATCTATTAGGGGCGCTACGCGTTGTTTCACAGGGCGTGTCAGGAGCATGGATGTATAAAGAAAAGAGAGGTGTCAGGAGTCAGCTTGAAACTAGAGCTCCAAACAGAAGTCTTCCTGTGAAAAAGAAATAGTCCTTATTACTCGAGGAGCACCAGAGAAGTCGACACAATGGCATCTCCAACCCCTCTGTCCAAGGCCAACACCACCTTCTCTCTGGCTTTGCTCAAAAAGTTTGGAGATGACGACAAGACGGCAAACATCTTCTACTCCCCTTTCAGCATCTCTTCAGCCCTGGCTATGGTGATGCTGGGGGCCAGAGGAAACACAGCCACACAGATGTCAGagTGCCTGAAAACCAAGGATTATCAGGATGATGTCCATGTTAGCTTTGCCCAACTGCTGAGTGAGCTCAACAAGGCTGATGCTCCGTATGCCctcagtgttgccaacaggcTGTATGGGGAGCAGTCCTACCAGTttgatgagGATTTCTTAGGAAAAACTAAGAAGTACTACAACGCAGAGCTGGAGACTGTTGACTTCTTAGCCGGCTCAGAGGCCGCCAGGCTCGACATCAACAGCTGGGTGCAGAAGCAGACTCAAGATAAAATTAAGGATCTGTTGGCCAAGGGTGATGTGGACAGCCTGAGCAGGCTGGTGCTGGTTAATGCCATGTACTTCAAAAGCGAC
>TU295657
cctgtGTGTCAGACACAATGGCATCTCCAACCCCTCTGTCCAAGGCCAACACCACCTTCTCTCTGGCTTTGCTCAAAAAGTTTGGAGATGACGACAAGACGGCAAACATCTTCTACTCCCCTTTCAGCATCTCTTCAGCCCTGGCTATGGTGATGCTGGGGGCCAGAGGAAACACAGCCACACAGATGTCAGAGTGCCTGAAAACCAAGGATTGTCAGGATGACGTCCATGTTAGCTTTGCCCAACTGCTGAGTGAGCTCAACAAGGCTGGCGCTCCGTATGCCctcagtgttgccaacaggcTGTATGGGGAGCAGTCCTACCAGTttgatgagGATTTCTTAGGAAAAACTAAGAAGTACTACAACGCAGAGCTGGAGACTGTTGACTTCTTAGCCGGCTCAGAGGCCGCCAGGCTCGACATCAACAGCTGGGTGCAGAAGCAGACTCAAGATAAAATTAAGGATCTGTTGGCCAAGGGTGATGTGGACAGCCTGAGCAGGCTGGTGCTGGTTAATGCCATGTACTTCAAAAGCGAC
>TU295658
CCGAAAGGCActtccttttatatatgtcaatgggcaCTTCCGGATAACTTCCTAGTTGttgaagtttatttaaaaaacgaATCGCTTATTAACAAAACATGACAATATTACCAGAAATCTGTTTACTTCTTGCTAACCTGGTTTCTCCTGTTGTATCGAAGACTGATCCCCGTCGATACATAATTCCCCCTGCCTAAACCTGAACCAAACCTGATCCCTAATCACGGAGGAGGCGCTCCTAGACTGACTGTCAGTATATATCTATTAGGGGCGCTACGCGTTGTTTCACAGGGCGTGTCAGGAGCATGGATGTATAAAGAAAAGAGAGGTGTCAGGAGTCAGCTTGAAACTAGAGCTCCAAACAGAAGTCTTCCTGTGAAAAAGAAATAGTCCTTATTACTCGAGGAGCACCAGAGAAGTCGACACAATGGCATCTCCAACCCCTCTGTCCAAGGCCAACACCACCTTCTCTCTGGCTTTGCTCAAAAAGTTTGGAGATGACGACAAGACGGCAAACATCTTCTACTCCCCTTTCAGCATCTCTTCAGCCCTGGCTATGGTGATGCTGGGGGCCAGAGGAAACACAGCCACACAGATGTCAGagTGCCTGAAAACCAAGGATTATCAGGATGATGTCCATGTTAGCTTTGCCCAACTGCTGAGTGAGCTCAACAAGGCTGATGCTCCGTATGCCctcagtgttgccaacaggcTGTATGGGGAGCAGTCCTACCAGTttgatgagGATTTCTTAGGAAAAACTAAGAAGTACTACAACGCAGAGCTGGAGACTGTTGACTTCTTAGCCGGCTCAGAGGCCGCCAGGCTCGACATCAACAGCTGGGTGCAGAAGCAGACTCAAGGTGGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU295656 True 949 TUCP 0.47 5 8600960 8606578
TU295657 False 539 TUCP 0.52 4 8550783 8606578
TU295658 False 869 TUCP 0.47 4 8600960 8605823

Neighbor

gene id symbol gene type direction distance location
LOC120552264 NA coding upstream 2308 8523276 ~ 8548475 (+)
LOC120552263 NA coding upstream 15493 8523269 ~ 8535290 (+)
ccdc135 LOC104947771 coding upstream 29077 8507749 ~ 8521706 (+)
LOC120552258 NA coding upstream 43902 8499162 ~ 8506881 (+)
rmdn1 rmdn1,LOC102793817 coding upstream 173094 8372816 ~ 8377689 (+)
pigm pigm coding downstream 18867 8625445 ~ 8630973 (+)
rps20 rps20 coding downstream 130534 8737112 ~ 8739902 (+)
LOC120552752 NA coding downstream 131997 8738575 ~ 8738642 (+)
zgc:56231 LOC103371641,LOC101074099 coding downstream 134511 8741089 ~ 8750456 (+)
LOC120551930 LOC104929256,LOC103371642,LOC102298937 coding downstream 144342 8750920 ~ 8755753 (+)
G218425 NA non-coding upstream 85699 8464818 ~ 8465084 (+)
G218422 NA non-coding upstream 119845 8430438 ~ 8430938 (+)
G218421 NA non-coding upstream 132698 8408500 ~ 8418085 (+)
G218420 NA non-coding upstream 149704 8398919 ~ 8401079 (+)
LOC120552410 NA non-coding upstream 238183 8304796 ~ 8312600 (+)
G218449 NA non-coding downstream 14922 8621500 ~ 8621720 (+)
G218521 NA non-coding downstream 27522 8634100 ~ 8634648 (+)
G218528 NA non-coding downstream 55028 8661606 ~ 8661968 (+)
LOC120552042 NA non-coding downstream 106725 8713303 ~ 8721068 (+)
G218537 NA non-coding downstream 120194 8726772 ~ 8728214 (+)
LOC120552660 NA other upstream 1177436 7360606 ~ 7373347 (+)
trdmt1 LOC104946219,LOC101070638 other upstream 4028077 4511713 ~ 4522706 (+)
ppp1r17 NA other upstream 4289185 4256048 ~ 4261598 (+)
chchd7 chchd7,LOC102799933 other upstream 4846408 3670420 ~ 3704375 (+)
G217723 cnn3 other upstream 5006998 3495450 ~ 3543785 (+)
rnpc3 NA other downstream 605340 9211918 ~ 9230163 (+)
G218694 LOC106675555,LOC106675866,LOC106674541,LOC106099046 other downstream 770366 9376944 ~ 9378147 (+)
G218695 NA other downstream 851605 9458183 ~ 9458700 (+)
G218848 LOC103365363 other downstream 1816008 10422586 ~ 10423249 (+)
G218875 pabpn1 other downstream 1881689 10488267 ~ 10494988 (+)

Expression


Co-expression Network