LOC120551928 (LOC104943218,LOC103369878,LOC100710535,LOC102301415,LOC101469805)


Basic Information

Item Value
gene id LOC120551928
gene name LOC104943218,LOC103369878,LOC100710535,LOC102301415,LOC101469805
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8957409 ~ 8970638 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU295908
CACAAAACCGGTTTCACAGGGTCCAGGAGCAGACGGTTTCCTATGCCAACAAAGAACCCCTTCACATGGCTATTTTTCTTTGTATCCTGTCCAAATTACACATATGAGTTCGGAGCTTGGGTGAGCTTCTCCATCATGACCCAGTGTCTCCCAGTGGCATTGTACACATTACTAGGCTTCATTCAGATGACCATCTGGGCCAAAGGGAAGCACAGAGCCTACAGCAGGGAGTTCAAAGACTACCCAAACCTCCGGATGGCCATTATCCCCCTGATTCTCTGATAGTG
>XM_039789526.1
GAAAGGAGAGGAACtacttctgtatgtgtgtgtgaggaacgagtgtgtgtgtgtgggtgtgtgtctgtgagtgtgtgtgtgtgtgtgtgtgtgtgttgtatttgctTATAGTGATGTTTCACTGAACACAGAGGACGTAGTAATAATCCACCACCATGAGCCGGACCACCTTTTTTGAGGTGAGGATCCTGGATGCCAACACGAAAGAGCACCTTTGTTTTTTAGATAAGGTGGAGCCCTACTCAACAATAGGAGACATCAAGAGCCTTTTTCACAAATCATatccTCAATGGTATCCTGCAAGACAGGCCCTAAGGCTTGATCCCAAGGAAAAATCACTCCGAGATGATGAAATCTTACAGAGTCTACCAGTTGGGACCACTGCGACCATGTACTTCAGAGATCTTGGTCCACAGTTAGGTTGGACTATGGTGTTTATGGCAGAGTGCATCGGGCCTCTTCTCACCTACCTCCTCTTTTATTTTCGAGTGCCATACATTTACTCACACGAATATGGCTTTACCTCAAGTCCCCATCCTGTTGTCAGactGGCCTGTGCCTGTCACACCTTCCACTATATGAAGAGGCTGATAGAGACTATCTTTGTGCATCGTTTCTCCCATGGGACCATGCCTCTCGGGACAATGGTCAGGAATTGTACCTATTACTGGGGTTTCTCAGCTTGGTTGGCATACTACATCAACCACCCTCTTTACACACCTCCATGTAAGTCAGCCCatgtacacacgcacacacacacacacaatgctgtTTGTCTCGATTTTCTGCAGCTTATCAACACCAGCCTATCTCTCTTCACAGCATATGGAGAACTACAAGTCAGCTATGCATTAGTCATGTTTGCTATGTGTGAACTTGGAAACTTCTCCATTCACTTGACTCTTACTAATCTCAGAGGAGAGGGGTCCAGGAGCAGACGGTTTCCTATGCCAACAAAGAACCCCTTCACATGGCTATTTTTCTTTGTATCCTGTCCAAATTACACATATGAGTTCGGAGCTTGGGTGAGCTTCTCCATCATGACCCAGTGTCTCCCAGTGGCATTGTACACATTACTAGGCTTCATTCAGATGACCATCTGGGCCAAAGGGAAGCACAGAGCCTACAGCAGGGAGTTCAAAGACTACCCAAACCTCCGGATGGCCATTATCCCCCTGATTCTCTGATAGTGATCAAAAACATGAATTATTGTAGCATATAAGGCGTGTATATTCACTTCCCTTAAGTGTTTTTTACTAaaagaaagaggtttgctgctGCTTAAAGCCAGCACTATGCAAGTTGTTTTCATGAACTGGAGTGGGAATGGGAGCAATAATATTTTGGCAATATACTAGagcatttaaagctttagtgcataactttttgatattattgaacatctgttacattcaagccattgccaaatgagttgctacaaagcta
>XM_039789528.1
GAAAGGAGAGGAACtacttctgtatgtgtgtgtgaggaacgagtgtgtgtgtgtgggtgtgtgtctgtgagtgtgtgtgtgtgtgtgtgtgtgtgttgtatttgctTATAGTGATGTTTCACTGAACACAGAGGACGTAGTAATAATCCACCACCATGAGCCGGACCACCTTTTTTGAGGTGAGGATCCTGGATGCCAACACGAAAGAGCACCTTTGTTTTTTAGATAAGGTGGAGCCCTACTCAACAATAGGAGACATCAAGAGCCTTTTTCACAAATCATatccTCAATGGTATCCTGCAAGACAGGCCCTAAGGCTTGATCCCAAGGAAAAATCACTCCGAGATGATGAAATCTTACAGAGTCTACCAGTTGGGACCACTGCGACCATGTACTTCAGAGATCTTGGTCCACAGTTAGGTTGGACTATGGTGTTTATGGCAGAGTGCATCGGGCCTCTTCTCACCTACCTCCTCTTTTATTTTCGAGTGCCATACATTTACTCACACGAATATGGCTTTACCTCAAGTCCCCATCCTGTTGTCAGactGGCCTGTGCCTGTCACACCTTCCACTATATGAAGAGGCTGATAGAGACTATCTTTGTGCATCGTTTCTCCCATGGGACCATGCCTCTCGGGACAATGGTCAGGAATTGTACCTATTACTGGGGTTTCTCAGCTTGGTTGGCATACTACATCAACCACCCTCTTTACACACCTCCATCATATGGAGAACTACAAGTCAGCTATGCATTAGTCATGTTTGCTATGTGTGAACTTGGAAACTTCTCCATTCACTTGACTCTTACTAATCTCAGAGGAGAGGGGTCCAGGAGCAGACGGTTTCCTATGCCAACAAAGAACCCCTTCACATGGCTATTTTTCTTTGTATCCTGTCCAAATTACACATATGAGTTCGGAGCTTGGGTGAGCTTCTCCATCATGACCCAGTGTCTCCCAGTGGCATTGTACACATTACTAGGCTTCATTCAGATGACCATCTGGGCCAAAGGGAAGCACAGAGCCTACAGCAGGGAGTTCAAAGACTACCCAAACCTCCGGATGGCCATTATCCCCCTGATTCTCTGATAGTGATCAAAAACATGAATTATTGTAGCATATAAGGCGTGTATATTCACTTCCCTTAAGTGTTTTTTACTAaaagaaagaggtttgctgctGCTTAAAGCCAGCACTATGCAAGTTGTTTTCATGAACTGGAGTGGGAATGGGAGCAATAATATTTTGGCAATATACTAGagcatttaaagctttagtgcataactttttgatattattgaacatctgttacattcaagccattgccaaatgagttgctacaaagcta

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
K10258 TER, TSC13, CER10; very-long-chain enoyl-CoA reductase

RNA

RNA id representative length rna type GC content exon number start site end site
TU295908 False 287 lncRNA 0.49 3 8957663 8958133
XM_039789526.1 True 1446 mRNA 0.44 12 8957409 8970638
XM_039789528.1 False 1350 mRNA 0.44 13 8957409 8970638

Neighbor

gene id symbol gene type direction distance location
ncf2 ncf2 coding downstream 177587 8768220 ~ 8779822 (-)
LOC120552044 anks6 coding downstream 222590 8724449 ~ 8734819 (-)
LOC120552041 ahrr coding downstream 244656 8639541 ~ 8712753 (-)
snx16 snx16 coding downstream 459395 8476127 ~ 8498014 (-)
LOC120552161 wwp1 coding downstream 539421 8378019 ~ 8417988 (-)
olfm3a olfm3,LOC103369880,LOC108250954 coding upstream 58485 9029123 ~ 9083108 (-)
col11a1a col11a1,LOC103148006 coding upstream 116513 9087151 ~ 9173024 (-)
LOC120552183 vav3,LOC102780841 coding upstream 644202 9614840 ~ 9726073 (-)
nrros NA coding upstream 796954 9767592 ~ 9777716 (-)
fbxo45 fbxo45,LOC103356146 coding upstream 815541 9786179 ~ 9790167 (-)
G218640 abca4,LOC103369882 non-coding downstream 8322 8948220 ~ 8949087 (-)
G218639 NA non-coding downstream 16680 8939896 ~ 8940729 (-)
G218614 NA non-coding downstream 84249 8872952 ~ 8873160 (-)
G218588 NA non-coding downstream 160710 8796497 ~ 8796699 (-)
G218587 NA non-coding downstream 165444 8789828 ~ 8791965 (-)
G218649 NA non-coding upstream 25466 8996104 ~ 8996388 (-)
G218671 NA non-coding upstream 157384 9128022 ~ 9129646 (-)
LOC120552334 NA non-coding upstream 203464 9174102 ~ 9185369 (-)
G218735 NA non-coding upstream 326399 9297037 ~ 9297238 (-)
G218739 NA non-coding upstream 404221 9374859 ~ 9375212 (-)
prkdc prkdc other downstream 105683 8797781 ~ 8851726 (-)
G218471 NA other downstream 526479 8430464 ~ 8430930 (-)
G218453 adarb2 other downstream 761530 8194929 ~ 8195879 (-)
G218085 LOC107687935 other downstream 3256833 5700229 ~ 5700576 (-)
G218019 NA other downstream 3920705 5027505 ~ 5036704 (-)
cngb3.1 LOC103363254,LOC102786718,LOC108428960,LOC104948783 other upstream 862824 9833462 ~ 9848241 (-)
G218950 NA other upstream 1606761 10577399 ~ 10669527 (-)
LOC120552013 NA other upstream 1633682 10604320 ~ 10615221 (-)
bloc1s5 bloc1s5 other upstream 1893647 10864285 ~ 10868787 (-)
pign pign,LOC104945957,LOC102796964 other upstream 3446710 12417348 ~ 12433035 (-)

Expression


Co-expression Network