cngb3.1 (LOC103363254,LOC102786718,LOC108428960,LOC104948783)


Basic Information

Item Value
gene id cngb3.1
gene name LOC103363254,LOC102786718,LOC108428960,LOC104948783
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 9833462 ~ 9848241 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU296063
GATTTGCACAatatacaatgacatttttggtGGAAATGAACAATAGCTGAATTAGAGAGATAATAGCATGGATAGTCTTATCTCTCTGAGGTTCAGATTAAAGTGGGAAAGAAATCCAACCTGTTTGCAGAGCTAATATATAGCTCAAATAGGGTTATGTATCCGTCTGCCTATTCTCAGCATATCTCAGCATATTAATAGTGACAATgataacattaaaggtcccatgacatggtgctctttggatgcttttatatagaccttttgtggtcctctaatactgtatctgaagtctctttcccgaaattcagccttggtgcagaattacagccactagagccagtcccacaatgagcttcccttagtatgtgccatttctgtgtctgtagctattgaggaggaggagggggggggcagcaaggtggagggtggggtgtggccttgaccaactgccactttgctcgtttgaaagccatgatgtctctctctctcattggtgggccaaattctctgggcaggcaaagcagagaaaggggaggtagccttgctccttatgacctcataaggagaagattccagatcggcccatctgagctttcattttctcaaaggcagagcaggatacccagggctcggtttacacctatcgctttctagccactgggggaacgcattttcatgccatgggacctttaatagttATGTTTAACCTGATCTGTGGCAGTAGCCAAATCTGAAGGTTTGTATATTGTAAATTATGGTCAATTATCTGGATCATCTGGAGCATCATTTTTTGTATAAAACAAAGTTAAGATGTACTAAATGTGTCCTCGGTTTTATTACTACAAGTTCTTCCGTACCTCAGACTGGTGTCCCCTCTGTaatcatttaatttgtaattaGTTTGAGTTTGGAAGAACTGGAAAGTTGGTATTAGCAGCAATGGCTCCACCTACTGTCTGACATTAGAATTTGATGACAACAGTCCTGGCTCAAACTGTTCAGCTGACAGCTGATCTGTGGAAAGCACATGAAAGAAATCTAACCTAAGGCATTGCCGGATTAAAATGAAGTGCTGGAGCTGTGCAAACATCAGGGCAGTGTGTTCAGTGTATTtgaaacattacacacatttaTACTTTCACATTTTAAGATGTCGTTAATGTTACTCATACCATAATGTTACTTTTCCACTGTTTAAAACTGTTTGCAACCTGTGCAGCTCAGCATAACAAGCTTTTGAAGAAATCTAAACAAGTTGTTCAAAATCTTTGAGGCCTAGGAaatggtagtctcgcattgccagaccttcctccacagcgctgcggaggagggtctggctaatccacacagcattcctggatgggagaggaacgt
>XM_039790894.1
GTAATTGCGAGGAAGAGCACTACAGAGTGTCCTGGATCTGAGTACTACATTGGAAAGTGTCTTCAGGAGGAGAAGTGGATGGTGTAGCCCACACAGACTACCGCCATGTTcaacaggttgaaaaaaatgatgggGGCTCCTGAGCCTCCCCCTGCCCAACCTGCTACCCCACCTTCCACCCCAACTCCGCCAGCTAAGGAAGAAAAGGCAcctgaaaaaaaagatgaaaaagagCAGGAAAAGAAaggggaagaaaagaaagaagaggaaaagaaagaggacaaaaatgaagagaagaaagaagaagagccCAAGAAGGAAGAGCCAAAACCAGCTCCAGCTCCTGTGGCCCCAGCTTCTGCGGCCCCAGCTGCTCCTGCCCCAGCTGCTCCTGCCCCAGCTGCTGCGGCCCCAGCTGCTCctgcccctgctgctgctgcggcccCAGCTGCTGCTCCGGCCAATCCAGAGGGGGCTAATGGTGAAGAGGCCCCTCCTTCTCCACCTGTTGTCTACTTCCGTTACACCGATGACGTACTCAGAAGTATGATTAAGAATTTAAGAGAGCAGACAGAGTTGCTAAGAGAGAAAGCCATAGACCCTTACGCCACTTCGCCAGAAATCTCCCCACCTGTCACACCTATTCTGAAGAAGGAGGACTACATCAGAATAAAGGAAGAGGAACGAATAGCAAAAGAAGAAGCGGATAAAAAGAAGGCAGAAGAGGCAGCCAAAAAggcagaggagaagaagaaaaaggacgAGGAGAAACGGCTGCAGGCCGAGATGAAAGAAACGGAGGAGAAGATTGCGGCGGAAGccaagaagaagatgaagaagatcTTCCCAGACGGGATTTACGCCTGCTTAGACGTTGTCTCTGGTCCAATCGAAAAAAAGATGGATACCATCCTGGGAAACACCATAGATGGTTTAGatCGTCGGTATATTACCTGGTTGGCCTTGGTAGCGGTGGTATTTAACTACAACATTTGGTTGTGCACTGCCCGGATGGTCTTCCCTTATCATAATGAAGTCGCCAACCCCTACTGGATAACTTTTGACATTCTCACTGACGTAGTGAATGTTATTGACATCATCATTTGGCAGCCCCGAATACAGTTTGTCAAAGGCGGAGACATTATTacagacagagtggtATGTAAGGATCATTATCGGAAATCACAGCGATTTATGACTGATATGATCAGCATCATCCCCTTTGACCTTCTCTGCCTGTACTCTGGATTCTCCTCCGTATACCGACTCAACCGCTTCCTCAGGATTGATAACTTCTTCGAGTTCAGCGATCGACTTGAGAGTATCATGGCCAAGGCCTACATCTGGAGAGTGATTCGCACCACAGGTTACCTGCTCTACGCACTCCATATCAACGCCTGTGCGTACTATGTTGCCTCTATGTACCAGGGTCTTGGATCGACCAAATGGGTGTATGATGGACAGGGCAACGCGTATCTGCGTTGTTACTACTACGCTGTCCGCAGTCTGATCAACATCGGGGGTCTTAACGAACCCCATACCGTCTTTGAGATTACCTTTCAGATGACTAACTTTTTCATTGGCGTCTTTGTGTTCTCCAGTTTGATTGGACAGatgaGAGACGTCATAGGAGCAGCAACAGCAGGTGAAACATATTTCCGGGCATCGATGGATGGCTGTGTTGACTACATGAACACCTACTCGATCCCAAGGGAAGTCCAGAACAGAATCCGGACCTGGTTCAACTACACCTGGGCAGCTCAGGGCATGCTGGATGAGTCCGAGCTGCTGGATAAGATGCCTCTGGTGATGAGAACTGCCATCGCTGTTGACATCAACCTATCCACCTTTCAGAAGATTGCACTGTTCCAGGGCTGCGACCAGCAGATGTTGGTGGACATGTTGTTGAGGCTCAAGTCAATCGTCTATCTACCTGGAGACTTTGTAGTGAAGAAAGGGGACATCGGTAAAGAGATGTACATCATTAAAAGTGGAGCGGTGCAGGTGGTGGGAGGACCTGACAACAGCATTGTGTTTGTCACACTGAAGGCTGGCAGCGTGTTTGGAGAAATCAGTTTACTACAGTCTGCCAAAGATGGAGGAAACAGGCGCACCGCTAACGTGAAAGCGCATGGCTTTGCTAACCTTTTTGTCCTGGAGAAGAAAGACTTGTTTGATATCCTGGTCCACTACCCAGAGTCTCAGAAAGTGTTGGCCAGGAAGGGAAGGAAACTGACCAAAGCCAAAGGCCCAGCACCTGCGAAAGGAAATGAGGAAAAGCCGAAAGGTGTTGCTCTGTTTGGAAAAAAACCACCAACACCCAAGATGATGAAACTCTTCCAAAATATGAAGAAAGCGGCCAACAAGTAGACACGTCGAGAGTGGGATGTTTGATGCTGCTGAGCTCTACCACTTCGAATCTAAATCATTTCGTATATTCCACTTTTCATTGGCTACTGAATGGCTCACAAGAAGACAGAAACAGGGCATCCGTAATTGTAATTAATATCCACCTTGTTAACTTTTGTAgattccttaaaggtcccatgacattgtgctctttggatgcttttatatagaccttttgtggtcctctaatactgtatctgaagtctctt

Function

NR:

description
cyclic nucleotide-gated cation channel beta-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296063 False 1377 lncRNA 0.42 2 9833462 9843509
XM_039790894.1 True 2618 mRNA 0.48 18 9834541 9848241

Neighbor

gene id symbol gene type direction distance location
LOC120552222 tmem241,LOC102778472 coding downstream 19572 9805505 ~ 9813890 (-)
fbxo45 fbxo45,LOC103356146 coding downstream 43295 9786179 ~ 9790167 (-)
nrros NA coding downstream 55746 9767592 ~ 9777716 (-)
LOC120552183 vav3,LOC102780841 coding downstream 107389 9614840 ~ 9726073 (-)
col11a1a col11a1,LOC103148006 coding downstream 660438 9087151 ~ 9173024 (-)
LOC120552683 LOC108245435,LOC103482304,LOC102203196,LOC101072926,LOC102289936,LOC101468359 coding upstream 978 9849219 ~ 9856898 (-)
LOC120552479 mmp16,LOC103363253 coding upstream 171087 10019328 ~ 10111393 (-)
LOC120551894 pomp coding upstream 380976 10229217 ~ 10232319 (-)
LOC120552310 ramp3,LOC104918156,LOC101488002,LOC102215016,LOC100706976 coding upstream 496094 10344335 ~ 10399252 (-)
LOC120552427 LOC104941941,LOC106963427 coding upstream 569702 10417943 ~ 10433475 (-)
G218745 prmt6 non-coding downstream 370420 9460354 ~ 9463042 (-)
LOC120551892 NA non-coding downstream 418011 9414966 ~ 9415451 (-)
G218739 NA non-coding downstream 458250 9374859 ~ 9375212 (-)
G218735 NA non-coding downstream 536224 9297037 ~ 9297238 (-)
LOC120552334 NA non-coding downstream 648093 9174102 ~ 9185369 (-)
G218807 NA non-coding upstream 99046 9947287 ~ 9947510 (-)
G218811 NA non-coding upstream 166508 10014749 ~ 10078804 (-)
G218822 NA non-coding upstream 365104 10213345 ~ 10213608 (-)
G218830 NA non-coding upstream 454961 10303202 ~ 10303405 (-)
G218872 ngdn non-coding upstream 623882 10472123 ~ 10473613 (-)
LOC120551928 LOC104943218,LOC103369878,LOC100710535,LOC102301415,LOC101469805 other downstream 862824 8957409 ~ 8970638 (-)
prkdc prkdc other downstream 981736 8797781 ~ 8851726 (-)
G218471 NA other downstream 1402532 8430464 ~ 8430930 (-)
G218453 adarb2 other downstream 1637583 8194929 ~ 8195879 (-)
G218085 LOC107687935 other downstream 4132886 5700229 ~ 5700576 (-)
G218950 NA other upstream 729158 10577399 ~ 10669527 (-)
LOC120552013 NA other upstream 756079 10604320 ~ 10615221 (-)
bloc1s5 bloc1s5 other upstream 1016044 10864285 ~ 10868787 (-)
pign pign,LOC104945957,LOC102796964 other upstream 2569107 12417348 ~ 12433035 (-)
bmi1a bmi1,commd3,LOC103371470,LOC106919738,LOC103482475 other upstream 3330019 13178260 ~ 13194142 (-)

Expression


Co-expression Network