G218872 (ngdn)


Basic Information

Item Value
gene id G218872
gene name ngdn
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 10472123 ~ 10473613 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU296187
GTCAGCAGTAAATGTTTATTCCACAAACTGATACACTATGCAGAGGTGGTGGGGAATTTTGTACTGCAGCACAACTGACTTATTGGTAACAAAATTGGCTAAACTCTGAAGTATAAACTAAAATGACGGCTGTGGGTAAGAAATCCTCTTCATGTCATTTGGTCTTCTAACATCATTGGACACGTGTTTCAGGTCTTCTTATCTGTGCTTCTTAAAGGCTCTTCTTTTCGTTTTCTTCTTCATgagtttcttctttttcttgggGCGAGAACTATCCCCATCCTGGCCCCCCTCGCCGCCTGTCAGTGCTGTGATGTCACTGAAGTGTGTGATGCCGCTCAGCTGGCCGGTCATGGACATCGCGCCTCTCTTTCTGGCATTCTTCTGCCGTTGCGGCATGTTGAGACGCACCATCATGGACTCTTCGTAATTTTTCCTGTGCAGCTCCTCGCGGCTCTCCCGATCGCTCTGGAAGTCCCGTCTGTCCCGGATCTCCTCCGGAGCGTCGCTGTACTGCTGTCTCAGCTCCTGGATCACAGAGCTTCTGAGGGCAGCTCGCCGCTGGCGCTCCGACTGAGCCTTCTTCTTGTCCGCTTCTGTCATGTCACCGTCTGG

Function

symbol description
ngdn Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within regulation of translation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human NGDN (neuroguidin).

NR:

description
neuroguidin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296187 True 615 lncRNA 0.51 4 10472123 10473613

Neighbor

gene id symbol gene type direction distance location
cebp1 LOC104941943,LOC107374846 coding downstream 3992 10464685 ~ 10468131 (-)
slc22a17 slc22a17,LOC102783004 coding downstream 11987 10442565 ~ 10460136 (-)
LOC120552427 LOC104941941,LOC106963427 coding downstream 38648 10417943 ~ 10433475 (-)
LOC120552310 ramp3,LOC104918156,LOC101488002,LOC102215016,LOC100706976 coding downstream 72871 10344335 ~ 10399252 (-)
LOC120551894 pomp coding downstream 239804 10229217 ~ 10232319 (-)
pabpn1 pabpn1 coding upstream 852 10474465 ~ 10494984 (-)
zfhx2 zfhx2 coding upstream 21742 10495355 ~ 10515206 (-)
psme1 psme1,LOC107103890 coding upstream 57058 10530671 ~ 10537166 (-)
LOC120552012 NA coding upstream 82173 10555786 ~ 10559896 (-)
LOC120552015 NA coding upstream 87112 10560725 ~ 10564374 (-)
G218830 NA non-coding downstream 168718 10303202 ~ 10303405 (-)
G218822 NA non-coding downstream 258515 10213345 ~ 10213608 (-)
G218811 NA non-coding downstream 393319 10014749 ~ 10078804 (-)
G218807 NA non-coding downstream 524613 9947287 ~ 9947510 (-)
G218745 prmt6 non-coding downstream 1009081 9460354 ~ 9463042 (-)
G218940 NA non-coding upstream 124095 10597708 ~ 10598808 (-)
G218951 NA non-coding upstream 159674 10633287 ~ 10664783 (-)
LOC120552022 NA non-coding upstream 184852 10658465 ~ 10661726 (-)
G218986 NA non-coding upstream 241472 10715085 ~ 10716899 (-)
G219113 NA non-coding upstream 904994 11378607 ~ 11477103 (-)
cngb3.1 LOC103363254,LOC102786718,LOC108428960,LOC104948783 other downstream 623882 9833462 ~ 9848241 (-)
LOC120551928 LOC104943218,LOC103369878,LOC100710535,LOC102301415,LOC101469805 other downstream 1501485 8957409 ~ 8970638 (-)
prkdc prkdc other downstream 1620397 8797781 ~ 8851726 (-)
G218471 NA other downstream 2041193 8430464 ~ 8430930 (-)
G218453 adarb2 other downstream 2276244 8194929 ~ 8195879 (-)
G218950 NA other upstream 103786 10577399 ~ 10669527 (-)
LOC120552013 NA other upstream 130707 10604320 ~ 10615221 (-)
bloc1s5 bloc1s5 other upstream 390672 10864285 ~ 10868787 (-)
pign pign,LOC104945957,LOC102796964 other upstream 1943735 12417348 ~ 12433035 (-)
bmi1a bmi1,commd3,LOC103371470,LOC106919738,LOC103482475 other upstream 2704647 13178260 ~ 13194142 (-)

Expression


Co-expression Network