dcaf11 (dcaf11)


Basic Information

Item Value
gene id dcaf11
gene name dcaf11
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 10516450 ~ 10526204 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU296191
ACTTTTTTTCACCTGATTATAGATGTTTAGGATGTAAATGAACTCCGTATGTCCTGGTAAATTGTAGCAATCTAACGTGAGGTAAATTATGAAATTGTGCGTCCCTTTCAGCCCTGAAGAGACACAAGCTGACAGGCGACACCTCGGTGATGACCTACCGCGGCCACGGCGTTCTGCACACCCTCGTCCGCTGCCGTTTCTCTCCAGAGTTCAGCACTGGACAGAGGTTCATCTACTCCGGCTGCTCCACCGGCAAAATCATCATTTATGACGTCCTGACGGGCAGCGTGGTCTCCAGACTGTCGGGCCATGACGCGTGTGTGAGGGACGTCAGCTGGCACCCGTACGAGGACAACATCGTCAGCAGCTCCTGGGACGGAGCGGTGCGAATGTGGGAGCACAGACAGACCCATCCgctagaggaggagagagagcggGAGAGAGTCTGACAACTGGAGAAAGACCTTTTTAGACGgcgagagaagaagagagacaaCGGAAAAAGATGTCggaggaagtgacatcaccgCAGAAGGGGGGCAGGGCCGGCCCCAACACAGGAAGGCAATACGCTCAGAAGGACTGGGAAGAGACTTAAATATCTTTTAAATTCAATGCTGGATATTAATATTACAGTTATAGCGTGGTTGTGAAGGGTTCATTTGGAAGGCATTATAGCCTTACGTTGTCAGGTGCAGTGGGACGGcctacttttgtttttgcctcacTGTCGACAGGCCAAAGCTTTTGAATTTGGCCTGAAACACTTCACGCAACATGTGCTGTAGCTCGAAGCGCTAAGCACGGCACTTACTTAATGAGCTATTGAAATTTATTGGTAAGTTAGTTATTTAGAAATCAATATTGGATATTGCAGGGAGAAACTGACAATTATGGTTCTGTATAAATGTATAGTATTTGAATGGTTTGTGCATTCAGGGAGTGTATTTAGATAGTTGTCAGTGTGCCGATTTGGACTTTCGCCCTTGCTGTTATGAATAACATGAGCTGTGTCCTATTTGAGGGGCCTTCACGTTCAAAGTCCACATTTAAAGAatgaatatattataatattccAGTACATTAATTACCAATTGCCCTAAATCATGACTCCTAAACCTGCAACATGTGTCCACCACTTGGTCAGCTGTTCAAGGGCAACTTTATGGCGGTCAACTTCCTATGTCGGGAAAAATTCCAAAAGCATACCAAAATGGCCAGGACGCCCCCAAACACGCTGTTAGTTTTACTGTCAAACTCACAGTGATTTTATGTGAAAACGTCTTTAGATCGCCTCACGACAGCCCCTGTATTCAGACACAGCATTAGTCTGAGGTCTTCTTATTGAGTCAATAAGGTCCTGGGTCAACACAACTCTGTAAACACAAGCCCtgagtcaatttaaaaaaaaaaaaaaaaaaaaagagtaattgTGTTGGCCACTATAAACCTGTGATCTGTTTATAAGATTTGAATGTGTGTGATAATATGTTGAGGTCAAGACTTGGTGACGGGACAGGGGATGTGTGCGTGGATCAAAACGTACACACTGATCTGTATATGCAATTTTCAGGTGTTTATACAGTATCCAAGCCCATATTTCACTCTCAGACCGTTGTTTTACAGTAACAATTAAACCTTTCAATGTATCGCAACGAA
>XM_039790923.1
GgttttttcacacttttgtaAACAACATGGCGATTCAGGGACTGGTCCCGCTAGCCACTGATTAAACACTGTGCTGTCAAACTGCAGCTGTTTTGCGTTATAAATGTAAACGTTAGACCTTGCGGAAGTTACGCGTCGGGCACATTGTTAAATTCGCACCGAAACGACAAAGAGCTGCACCGACGAGCTGTCAAGAAGAGCGTTTGACAGTCAAACGGCCCCCTTCAGTCTATGGGCTCTCAGTCCAGTTCTGGGATGTCTGGTGGAAGGGGCTCTTCCAGTGGCAACCCAGCTGATCAACCTGAAGGAGCAGAATCAAACcagagtagcagcagcagcagcagccgagGCCGCAGGACGGCTGACAGGCAGCAGGGAGACAGGcagcagggagacagacagccaGCATCAGAGGAGGACGTTGACTTAGCTGAAGTGCTGGCTTACCTACTAAGGAGGGGCCAGGTCAGACTGGTCCATGGCAGTGGAGCCACAGGGCTGCAGCTGGTCCAGTCCTACTCTGACTCTGATGAGGACAGCGACGGTGCCTGGGAGGGGCGGCTGGGGAACCGCTACAATCCACCAGTGGACGCCCAACCCGACACACATGAAGTGGACCAAAGTGAGATCCGAACTCAGATCATGCTGGCTACCGGCTCCTCTACCCTGAAAGGCCGACACAGTTTCACCCACATGCTAACAGAGAGGGAACAAGGCAGATGTAGAGGCTCTAGTTTTTCACATGGAGAGTGCAGTCGTATCCGCACACATTTTCTGCCAAACTATGTATCCCACAAGGATACGTACCAGCAGAAAGCCTTCTGTGGCGTGTACAGCGAGAATGGCAACATGTTCCTCTCTGCCTGCCAAGACCAGAACGTCCGCTTGTACGACACCACCAGGGGGCGCTTTCACCTACGGCGAACAGTGAAGGCTCGGGATGTGGGCTGGAGTGTTCTGGACGTCTGCTTCACCCCTGATGCACAAAATGTACTCTACTCCAGCTGGTCTGACTACATTCATATGTGCAGTATAGATGGAGACAGTGAAAACCACACCGCCCTGGACCTCAATCCAGATGAGAGGAGGTTCTGTGTGTTCTCATTGGCTGCGTCCACAGATGGCAACGAGATCCTGGGAGGAGCAAATGATGGCTGCCTTTACGTTTTTGATCTCGAGCAGAATAAACGAACGCTGAAGATTGATGCCCACGAGGATGATGTGAACGCGGTGGCGTTCGCCGACAGCTCGTCCCAGCTGCTCTTCTCCGGCAGCGACGACGCGCTGTGCAAGGTGTGGGACAGACGGACGCTGCGGGAGGACAGACCGCAGCCCGTCGGACAGCTGGCCGGCCACCGAGACGGCATCACCTTCATCCACAgcaaggtggggggggggcgaagAGAGGAGTACTGCTGGTATTTTATCAATCTGTCAAAGACAAGTTCCCCAAAGCCTCATGGGGTGACGCCGACGCGCTATCGAAACTTATTCAGCAACTCAGAGATCCATCAAGCTCTGGGACGTCCGAAAGTTCTCGCGCACAAAGAGGTTAAGCAGTCCCCCCCCtcttcaccatcaaaactgGGATTACCGCTGGCAGCAGGTTCCCAAAGAGCCCTGAAGAGACACAAGCTGACAGGCGACACCTCGGTGATGACCTACCGCGGCCACGGCGTTCTGCACACCCTCGTCCGCTGCCGTTTCTCTCCAGAGTTCAGCACTGGACAGAGGTTCATCTACTCCGGCTGCTCCACCGGCAAAATCATCATTTATGACGTCCTGACGGGCAGCGTGGTCTCCAGACTGTCGGGCCATGACGCGTGTGTGAGGGACGTCAGCTGGCACCCGTACGAGGACAACATCGTCAGCAGCTCCTGGGACGGAGCGGTGCGAATGTGGGAGCACAGACAGACCCATCCgctagaggaggagagagagcggGAGAGAGTCTGACAACTGGAGAAAGACCTTTTTAGACGgcgagagaagaagagagacaaCGGAAAAAGATGTCggaggaagtgacatcaccgCAGAAGGGGGGCAGGGCCGGCCCCAACACAGGAAGGCAATACGCTCAGAAGGACTGGGAAGAGACTTAAATATCTTTTAAATTCAATGCTGGATATTAATATTACAGTTATAGCGTGGTTGTGAAGGGTTCATTTGGAAGGCATTATAGCCTTACGTTGTCAGGTGCAGTGGGACGGcctacttttgtttttgcctcacTGTCGACAGGCCAAAGCTTTTGAATTTGGCCTGAAACACTTCACGCAACATGTGCTGTAGCTCGAAGCGCTAAGCACGGCACTTACTTAATGAGCTATTGAAATTTATTGGTAAGTTAGTTATTTAGAAATCAATATTGGATATTGCAGGGAGAAACTGACAATTATGGTTCTGTATAAATGTATAGTATTTGAATGGTTTGTGCATTCAGGGAGTGTATTTAGATAGTTGTCAGTGTGCCGATTTGGACTTTCGCCCTTGCTGTTATGAATAACATGAGCTGTGTCCTATTTGAGGGGCCTTCACGTTCAAAGTCCACATTTAAAGAatgaatatattataatattccAGTACATTAATTACCAATTGCCCTAAATCATGACTCCTAAACCTGCAACATGTGTCCACCACTTGGTCAGCTGTTCAAGGGCAACTTTATGGCGGTCAACTTCCTATGTCGGGAAAAATTCCAAAAGCATACCAAAATGGCCAGGACGCCCCCAAACACGCTGTTAGTTTTACTGTCAAACTCACAGTGATTTTATGTGAAAACGTCTTTAGATCGCCTCACGACAGCCCCTGTATTCAGACACAGCATTAGTCTGAGGTCTTCTTATTGAGTCAATAAGGTCCTGGGTCAACACAACTCTGTAAACACAAGCCCtgagtcaatttaaaaaaaaaaaaaaaaaaaaagagtaattgTGTTGGCCACTATAAACCTGTGATCTGTTTATAAGATTTGAATGTGTGTGATAATATGTTGAGGTCAAGACTTGGTGACGGGACAGGGGATGTGTGCGTGGATCAAAACGTACACACTGATCTGTATATGCAATTTTCAGGTGTTTATACAGTATCCAAGCCCATATTTCACTCTCAGACCGTTGTTTTACAGTAACAATTAAACCTTTCAATGTATCGCAACGAA

Function

symbol description
dcaf11 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Orthologous to human DCAF11 (DDB1 and CUL4 associated factor 11).

NR:

description
DDB1- and CUL4-associated factor 11

GO: NA

KEGG:

id description
K11801 DCAF11; DDB1- and CUL4-associated factor 11

RNA

RNA id representative length rna type GC content exon number start site end site
TU296191 False 1659 TUCP 0.44 3 10523438 10526204
XM_039790923.1 True 3166 mRNA 0.50 15 10516450 10526204

Neighbor

gene id symbol gene type direction distance location
thtpa thtpa coding upstream 4148 10508133 ~ 10512302 (+)
ngdn ngdn,LOC103482313 coding upstream 42830 10464346 ~ 10473620 (+)
zmp:0000000991 NA coding upstream 101088 10401164 ~ 10415362 (+)
trnac-gca_34 NA coding upstream 283893 10232486 ~ 10232557 (+)
nsmaf nsmaf coding upstream 683387 9814806 ~ 9833063 (+)
LOC120552103 NA coding downstream 1318 10527522 ~ 10530677 (+)
pck2 pck2,LOC104953087 coding downstream 16133 10542337 ~ 10555308 (+)
tm9sf1 tm9sf1 coding downstream 159824 10686028 ~ 10695609 (+)
pdcd6 pdcd6 coding downstream 218474 10744678 ~ 10769201 (+)
bmp6 bmp6,LOC102783604 coding downstream 262641 10788845 ~ 10835044 (+)
G218855 LOC107095245,LOC103482310,LOC104941941,LOC106909044,LOC103135331,LOC103135328,LOC106963427 non-coding upstream 86387 10429009 ~ 10430063 (+)
G218849 LOC103396567,LOC106514906,LOC101486325 non-coding upstream 91773 10424291 ~ 10424677 (+)
G218831 NA non-coding upstream 186925 10329255 ~ 10329525 (+)
G218796 NA non-coding upstream 551646 9964434 ~ 9964804 (+)
G218728 NA non-coding upstream 668254 9844954 ~ 9848196 (+)
G218884 NA non-coding downstream 9641 10535845 ~ 10536541 (+)
G218892 NA non-coding downstream 31676 10557880 ~ 10563111 (+)
G218896 NA non-coding downstream 51195 10577399 ~ 10583350 (+)
G218899 NA non-coding downstream 65415 10591619 ~ 10599801 (+)
G218908 NA non-coding downstream 106783 10632987 ~ 10664783 (+)
G218875 pabpn1 other upstream 21462 10488267 ~ 10494988 (+)
G218848 LOC103365363 other upstream 93201 10422586 ~ 10423249 (+)
G218695 NA other upstream 1057750 9458183 ~ 9458700 (+)
G218694 LOC106675555,LOC106675866,LOC106674541,LOC106099046 other upstream 1138303 9376944 ~ 9378147 (+)
rnpc3 NA other upstream 1286287 9211918 ~ 9230163 (+)
ipo4 ipo4,LOC102785023 other downstream 176934 10703138 ~ 10719314 (+)
zgc:101569 LOC102309791,LOC106455900,LOC102784166,LOC100695384,LOC101475816,LOC106931939 other downstream 243171 10769375 ~ 10815975 (+)
tmem14ca LOC104958612,LOC101162485 other downstream 814123 11340327 ~ 11342705 (+)
G219081 NA other downstream 820978 11347182 ~ 11348405 (+)
phldb2b LOC104958614,LOC100693428,LOC103354549,LOC108244019,LOC101481236,LOC102301890 other downstream 845246 11371450 ~ 11418476 (+)

Expression


Co-expression Network