bloc1s5 (bloc1s5)


Basic Information

Item Value
gene id bloc1s5
gene name bloc1s5
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 10864285 ~ 10868787 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU296430
ATGACTGCAATTAGCAAAATACCATTGCAGTTTTTGGCATATTGTAGGTGGTCTTTATTACTATGTCATTAAAATATAGGCTATGTTAATGACTGATAGTTTAGGTCAGCTAGGTAGCGCTTTCGCTTTCACAATTAGTTGCCAGTTAGCTAAGCATTTGGAACATTTAGCAAGTGATTAGCTAGCACTTAGTTAGTAACTAGCTAGCTGGTTGAGCTAGCTGCTCCAAAGGAGACAACTTTGATTTAACTACTAAAATTAAGGTGCCAGCAGAGTTTGTAAGAATGGACAAAATTGCTAAAGATGTGGGTGATATCCAGTCCCGACTGTTAGACCACAGACCAGTCATCAATGCAGAGGTCCGCTACTTCGTGAGAGAGTTTGAGGAAAAACGTGGACACAGGGAGAGCAGACTGCTGGAGAACCTCAATAAAATGGTTTCGGAAACAAATGAGCAAATCCTGCCAACAGATTTAGAGGGCATGCTGTCTGATGTTGTTAAACGTGGAGGCTGCTAATCACATGGCAGAGAGAGTCCAGCAGAGGGAGCTAGAGGCACAGCAGAGCATGCAGCTGCAGGTGAACATGGAGCGTTTGAAAGATGATTGGGCAGAGTTTCTAAAAGAACAGCAGAGATTAAAGGAGGAAGTGAATGAAGAGCACGCCAAGGCTGTAGGAAAACTCAGCACCAAGTACAGTGAAAAGAAGAAGGACTTGACCAGGTTTTCACTCCTCTAATCAGTTGATGTTTGCGAGGGTGGGAGTGAACAAACCTCTCTTAATACATGCTTGTGTTTGTTATGGACATAGACGTCAGTTCTGCTGCACGAAGCTATCGCCTTTGATTGATGAACTCGGCCGTTGGCATAAAACGTAGAGGTTTTGCGCCTGCACAATACTCAACATTTTCCAAATCGTGAATCTAAAAGTACGATTAACAACGAGGCATTTCACGGGCCATCAAACTCACAAAGTTTCTGTCTTTAGCGAATGGAATTTTCACGGCACCTAAAAGGTCTGGAACATGTCATTTCTAAACAAGCAATCATGTGATTGTTCCTTGGCCGTGAAGTTTTCAACATTTCAAGATTTTTAATGGATGCCTGCCTGAAGGGTGCTGATGATAAATTTGCATCTGCCTCAAGTTGAAAGGAACCTGGAGTTTAGCACCAAGGCGAGATATTCTAAGCCCTGAAAGCCAGATCATTAAATGTTAAAGGAGCCCTTCTGAGCAGGTGTGTTTAAAGCACAGCTCAAGTGTTGCAGAAACAAGCTCAAACTAAACAGTTTCCAGAACAAATCATCCCTCATCAGCTATCCAGTGTTTGGAACATTTGACCTCTGACATTAACTTTGTGTAAACCAACTGTCTGTGAAGTAACTTTCATTATAAAAGGCCTTTGCTGAAACCAATTGGAATGATCAGCAgcagctgttttttgtttgctttgCCACCTCAAATCTGATTTAAATGAGTTACAAATCC
>XM_039790892.1
CAGTCAGCTGACTTCCATTCACATGACTGCAATTAGCAAAATACCATTGCAGTTTTTGGCATATTGTAGGTGGTCTTTATTACTATGTCATTAAAATATAGGCTATGTTAATGACTGATAGTTTAGGTCAGCTAGGTAGCGCTTTCGCTTTCACAATTAGTTGCCAGTTAGCTAAGCATTTGGAACATTTAGCAAGTGATTAGCTAGCACTTAGTTAGTAACTAGCTAGCTGGTTGAGCTAGCTGCTCCAAAGGAGACAACTTTGATTTAACTACTAAAATTAAGGTGCCAGCAGAGTTTGTAAGAATGGACAAAATTGCTAAAGATGTGGGTGATATCCAGTCCCGACTGTTAGACCACAGACCAGTCATCAATGCAGAGGTCCGCTACTTCGTGAGAGAGTTTGAGGAAAAACGTGGACACAGGGAGAGCAGACTGCTGGAGAACCTCAATAAAATGGTTTCGGAAACAAATGAGCAAATCCTGCCAACAGATTTAGAGGGCATGCTGTCTGATGTTGTTAAACGGTTGGAGGCTGCTAATCACATGGCAGAGAGAGTCCAGCAGAGGGAGCTAGAGGCACAGCAGAGCATGCAGCTGCAGGTGAACATGGAGCGTTTGAAAGATGATTGGGCAGAGTTTCTAAAAGAACAGCAGAGATTAAAGGAGGAAGTGAATGAAGAGCACGCCAAGGCTGTAGGAAAACTCAGCACCAAGTACAGTGAAAAGAAGAAGGACTTGACCAGGTTTTCACTCCTCTAATCAGTTGATGTTTGCGAGGGTGGGAGTGAACAAACCTCTCTTAATACATGCTTGTGTTTGTTATGGACATAGACGTCAGTTCTGCTGCACGAAGCTATCGCCTTTGATTGATGAACTCGGCCGTTGGCATAAAACGTAGAGGTTTTGCGCCTGCACAATACTCAACATTTTCCAAATCGTGAATCTAAAAGTACGATTAACAACGAGGCATTTCACGGGCCATCAAACTCACAAAGTTTCTGTCTTTAGCGAATGGAATTTTCACGGCACCTAAAAGGTCTGGAACATGTCATTTCTAAACAAGCAATCATGTGATTGTTCCTTGGCCGTGAAGTTTTCAACATTTCAAGATTTTTAATGGATGCCTGCCTGAAGGGTGCTGATGATAAATTTGCATCTGCCTCAAGTTGAAAGGAACCTGGAGTTTAGCACCAAGGCGAGATATTCTAAGCCCTGAAAGCCAGATCATTAAATGTTAAAGGAGCCCTTCTGAGCAGGTGTGTTTAAAGCACAGCTCAAGTGTTGCAGAAACAAGCTCAAACTAAACAGTTTCCAGAACAAATCATCCCTCATCAGCTATCCAGTGTTTGGAACATTTGACCTCTGACATTAACTTTGTGTAAACCAACTGTCTGTGAAGTAACTTTCATTATAAAAGGCCTTTGCTGAAACCAATTGGAATGATCAGCAgcagctgttttttgtttgctttgCCACCTCAAATCTGATTTAAATGAGTTACAAATCCAATATTTTCATTGCtgtttaaacagaaaaaaacatgaatcacattttgtttttctggttTGAATTTCTGTCTGGTCATatgtacataaaaaaagataaacgCAAA

Function

symbol description
bloc1s5 Predicted to be located in transport vesicle. Predicted to be part of BLOC-1 complex. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome. Orthologous to human BLOC1S5 (biogenesis of lysosomal organelles complex 1 subunit 5).

NR:

description
biogenesis of lysosome-related organelles complex 1 subunit 5

GO:

id name namespace
GO:0030133 transport vesicle cellular_component
GO:0031083 BLOC-1 complex cellular_component

KEGG:

id description
K20187 BLOC1S5; biogenesis of lysosome-related organelles complex 1 subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
TU296430 False 1486 lncRNA 0.42 5 10864390 10868765
XM_039790892.1 True 1615 mRNA 0.41 5 10864285 10868787

Neighbor

gene id symbol gene type direction distance location
txndc5 txndc5 coding downstream 15989 10834867 ~ 10848296 (-)
rec8b NA coding downstream 120817 10725062 ~ 10743468 (-)
si:ch211-196f5.2 NA coding downstream 142263 10720158 ~ 10722022 (-)
nanog NA coding downstream 164816 10697289 ~ 10699469 (-)
fen1 fen1 coding downstream 178346 10679795 ~ 10685939 (-)
eef1e1 eef1e1,LOC102782929 coding upstream 17753 10886540 ~ 10895407 (-)
slc35b3 slc35b3 coding upstream 75305 10944092 ~ 10956895 (-)
ofcc1 ofcc1 coding upstream 256346 11125133 ~ 11210500 (-)
tfap2a tfap2a coding upstream 453815 11322602 ~ 11336390 (-)
mak mak coding upstream 473954 11342741 ~ 11357345 (-)
G218986 NA non-coding downstream 147386 10715085 ~ 10716899 (-)
G218951 NA non-coding downstream 199502 10633287 ~ 10664783 (-)
LOC120552022 NA non-coding downstream 202559 10658465 ~ 10661726 (-)
G218940 NA non-coding downstream 265477 10597708 ~ 10598808 (-)
G218872 ngdn non-coding downstream 390672 10472123 ~ 10473613 (-)
G219113 NA non-coding upstream 509820 11378607 ~ 11477103 (-)
G219125 NA non-coding upstream 547945 11416732 ~ 11420755 (-)
G219130 tmem56,LOC103482516,LOC104925854,LOC107094156 non-coding upstream 572457 11441244 ~ 11445755 (-)
G219138 NA non-coding upstream 598307 11467094 ~ 11469317 (-)
G219169 NA non-coding upstream 903064 11771851 ~ 11807316 (-)
G218950 NA other downstream 194758 10577399 ~ 10669527 (-)
LOC120552013 NA other downstream 249064 10604320 ~ 10615221 (-)
cngb3.1 LOC103363254,LOC102786718,LOC108428960,LOC104948783 other downstream 1016044 9833462 ~ 9848241 (-)
LOC120551928 LOC104943218,LOC103369878,LOC100710535,LOC102301415,LOC101469805 other downstream 1893647 8957409 ~ 8970638 (-)
prkdc prkdc other downstream 2012559 8797781 ~ 8851726 (-)
pign pign,LOC104945957,LOC102796964 other upstream 1548561 12417348 ~ 12433035 (-)
bmi1a bmi1,commd3,LOC103371470,LOC106919738,LOC103482475 other upstream 2309473 13178260 ~ 13194142 (-)
pdk3a pdk3 other upstream 2819634 13688421 ~ 13696741 (-)
sema5a sema5a other upstream 2954671 13823458 ~ 13940381 (-)
neto1l neto1,LOC102782256 other upstream 3116579 13985366 ~ 14076069 (-)

Expression


Co-expression Network