XLOC_005005


Basic Information

Item Value
gene id XLOC_005005
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 48414527 ~ 48419991 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011039
AGAATTTCTAAAAGTTCTGCATGTATTTTATCAAGTGTTTTCAAGCATAAGAGCTTCACTCGTGACTCTGCTGAATCAGTTTTATGATGCGTATGAACACagattttgacattttcagtaaaCAAAATCATCTATCAGAGGAACCAGTTGAACTTTGGTTACATTCGGCTTCTTTGCTTTGCTAATGTGTACTCAAGATTGAAGAATATCACAAAACCTGTCAAGAAATCCTCAATAAATGTTGAATAAATCCACTACTTAAAGAACGACATTATTATCATGACAACTCAGCACCTTGTAAATTCTCATTCAACCAAACAATTGTACATCATTTCAACTATTTCAATAAAACACATTGGCATAAAGACTTAACCATTAAGAATAAAGAAAATTGCAAAAACACCACCAAAAGATCTGAGTTTTACTTCAATAATGGGGTGAAATATGACCAGGGGAAGTTCTTGACAGGTTTTATAATATTCCCACAGACTCCAACAAACATTTCCATGCGTTTTACATGTTTCCATCTGCATACAAGAACTATTAAAGAGACGTTTCACCCTAAAAAAGACCCTGTCTGAATTCTGTTGAACAGAAgttaagatattctgaagaatgctggaactACTTCCACAGCATCTTTTGCTTTTGGATGCATGTTttatttccagcattcttcaaactatcttgctttgtgttcaacagaagaaactcacagGTTTGATGAGGAAATGTTCAATTTAGGGcgtgctgtctctttaagaggcTCTTGAATATTCATATCATATTCGTTTGTGTTGTGATGTTGATAAGAACATGGACAGGAGTGTCTGGACGGTTAACAGTAATGCAGTTCAAGCTTCAGCTTCTCTATGAATAAGTGCAATAGAAAACTTCAACCCAATAACCAATCAGAAACTCCctgaaaataataatatgcacAAAATAATGCAGTCGATCAGTCATTCAGAGATGATCCTCGTCCACATACATTCACCACAGAGACTAAACTACAGGCGACTTATTATCTGTATATgccaaatattaaacaaaattcaGAGTCTCATTCTGCCTGTGTTTCATAACAAAGAGCTTCagcacattctcacacacatgctggccttaaagagacagtacacccaaaaatgaacatttaatcattatttactcacattcaagaggtttctttcttctgttgaacatgagaagatattctgaagaacacTGGAAGAAACAGTcatactattaaagtcaatggctgcttttctccagcattcttcaaaacatcttcattcgtgttcagcagaagaaacttaaacaggtttgaatattcattagtaaatgatgacagaatttgcatttaaaggtgaactgtccttttaaaagAACTGCCTCAGAACATTGGCTAACCTTCAAGTAACGTAAACAGAACGTTTGTGCAAAGttatctgaactttaataattctAGAActggttttgctgatgttttcCTTCACAATGAACTCTTCAGATGTTCAGAAATGATGATTTCATTGGTTTTTGTTTGCTTGGAAATCATCAAGTGTAGTTTGAGTAACATTATGGCAAGGTTCTCTCAAAGTTAATGACAAAACGTAATGTTCTCTTAAAGAAACGGTTCACCAACAAATTAAAGATTTATCGTTTCCTCACACTCGAGCAGATGTAAACGTGTAtgagttctttcttctgttaaacacaagataagatattctgaagaatccTGAAAATAAAACAGTCATTGATAtccataacagaaacaaaaacaatatataaagtcaatggctgcttttctagcattcttcagaatatcttcatgTGTTCGACAGAAAAACCTAAACAGATTTGAATATTCATGAGTAAATGAAAAAACTGAATTTAGATTTAAAGGTCAACTGTCCCTTCAAAAGAATGGCCTCAGAACATTAGCTAACCTTCAAGTAACGTTAACAGAACGTTTGTACAAAGATTTATAATCTTTAATAAATCAAGAACTGTTCTTCTGACATTTCCATAAAAATGAACTCTTCAGATGTTCAGAAATGATGATTTCACAGCTTTTTGTCTGCTTAGAAATCACCAAATGACGTTTGAGTATTGTTATGGCAAGGTTCTCTCATTATAACATGTAATGTTCtcttaaagcacaggtgtcaaactcagttcctggagggctgcagctctgcacagtttagttccaaccctaattaaacacacctgatcaaactaattgagtccttcagggttgtttgaaacctacaagtaagtgtgttggagcagggttggaactaaactgtgcagggctgtggccctccaggaattgagtttgacacccctgtcttaaagggacagtccaccaaaaaatgaaaagtgATCATTTCCTCACACACAAGTGGATGTAACATGTGTGATTtattccttctgttgaacacaagagcaagatattctgaagaatgcagGAAGAAACAACAACACTATAGAGCTCAATGGTTGATTTTTCCTGCAATTTTCAGTCTTCAATTGTGTGCAAATGAcgacagtattttcattttttggctgaactgtccctttaatgcaggggtgtccaaactctgtcctggagagtgtttctccaacttgcttcaacacacctgcctggaagtatCTAGTACAGGGACTTAGacctcaattcctggagggccgcagccctgcacagtttagttccaaccctgctccaacacacttacctgtagctttcaaacaagcctgaaggactcaattagtttgatcaggtgtgtttaattagtgttggaactaaactgtgcagaactgcggccctccaggaattaagtttgacatccctgatcttgtatatctagtaagagcttgatcagcaggttcaggtgtgtttgattagggttggagctaaactctccaggacagagCCTGGACACCCCAGCTTTAAAGTCATTCTTTGGCAATTGCTGCATCTCACTTCAACACTTCACACAATAACAGTGTTATGATCAACTGCGTACAGATCGTCTGTCTgggttatttttttctgtcttcaCCCTCATGAATCTCATCCCcaaatacagccatttagaagTTATGCTGTGCTATAAACACATATTTTTCTGTCGCACTGACCAAATACGCTGTTTATTAATCAATGCAAGCGTGCATTCATGaagccagccaatcagattagagCTCGTCAGATTAAGAATGCTCTGtgtttctgcatgtgtgtgtgtgtgtgtgtgtgtgtatagagttATGCACAGAAAGATTTAATGACAATCAGCCAATCTTTAACTCCCAAACTGAACTGAAGGCTTAAAATAACTCAAGTTAAATCAGCATATTTTAAGGTCATCATAAGGAAAATGTTGCATTTGATTAAACAATGTATGCAATAAATGTTATGCTTATGTTTTTAATGAACCAATAAAGCAAGAAAGAGCCTCTGCTTGTGTTTGAGTGGAAACCGATTGATTCTGCTCATGTTTTAAGGGTTAATCTGATGACCGAATGTTCAATTCTTTTACAAACAGTTTTGTTTTCTGGCTGAAGTATGCTCTTACTCTTATTCTGCTTGTTTCAGGGTCATTCTTAAAAGGACAGTACACCTAAAAAGGAAAATTCAGTCAATTACAAACCCTAAAGTGGATCCAAACTTGTACTGTgtttcacaaaagaagatactttgaagaatgttaaaaaccacagacatccatagtaggaaaaaataaatcaaatgtctATTTTTCCATCATACTTCAAACTATCTTAtcaccaaaaaaaacaacaaatcagTTTAGGAGCaatttcatttttagatgaactgtctctttaagaaaacTAGTGCAACTCTGTTTACACAAACACTGCTTCCTTTCTCGCAGGAAGTCGCTCTGCTTGTTTTAGTATAAATAAGGCATGGAGGAAAGCAGTGAAGAGATGAACGAAAGACTGGACAGCAACTCTCGCTGTATTCACTGTCATATTCAGACGGCCAGCTTGTTGGCGATGGTCATGAGCACTTTGAGGACGGGCATGAAGGCCGAGATCTCGCTGAAGTTGCTGCTGCTCACCACCTGCGTGTGCACCTCCAGACCTTGCACATAGCTGCGTGCGCTAACACACCGGCTAATCTCGTGGAGACCGCCGAGGATGCTGGGAGAAAGCT
>TCONS_00011040
GTTCTGCATGTATTTTATCAAGTGTTTTCAAGCATAAGAGCTTCACTCGTGACTCTGCTGAATCAGTTTTATGATGCGTATGAACACagattttgacattttcagtaaaCAAAATCATCTATCAGAGGAACCAGTTGAACTTTGGTTACATTCGGCTTCTTTGCTTTGCTAATGTGTACTCAAGATTGAAGAATATCACAAAACCTGTCAAGAAATCCTCAATAAATGTTGAATAAATCCACTACTTAAAGAACGACATTATTATCATGACAACTCAGCACCTTGTAAATTCTCATTCAACCAAACAATTGTACATCATTTCAACTATTTCAATAAAACACATTGGCATAAAGACTTAACCATTAAGAATAAAGAAAATTGCAAAAACACCACCAAAAGATCTGAGTTTTACTTCAATAATGGGGTGAAATATGACCAGGGGAAGTTCTTGACAGGTTTTATAATATTCCCACAGACTCCAACAAACATTTCCATGCGTTTTACATGTTTCCATCTGCATACAAGAACTATTAAAGAGACGTTTCACCCTAAAAAAGACCCTGTCTGAATTCTGTTGAACAGAAgttaagatattctgaagaatgctggaactACTTCCACAGCATCTTTTGCTTTTGGATGCATGTTttatttccagcattcttcaaactatcttgctttgtgttcaacagaagaaactcacagGTTTGATGAGGAAATGTTCAATTTAGGGcgtgctgtctctttaagaggcTCTTGAATATTCATATCATATTCGTTTGTGTTGTGATGTTGATAAGAACATGGACAGGAGTGTCTGGACGGTTAACAGTAATGCAGTTCAAGCTTCAGCTTCTCTATGAATAAGTGCAATAGAAAACTTCAACCCAATAACCAATCAGAAACTCCctgaaaataataatatgcacAAAATAATGCAGTCGATCAGTCATTCAGAGATGATCCTCGTCCACATACATTCACCACAGAGACTAAACTACAGGCGACTTATTATCTGTATATgccaaatattaaacaaaattcaGAGTCTCATTCTGCCTGTGTTTCATAACAAAGAGCTTCagcacattctcacacacatgctggccttaaagagacagtacacccaaaaatgaacatttaatcattatttactcacattcaagaggtttctttcttctgttgaacatgagaagatattctgaagaacacTGGAAGAAACAGTcatactattaaagtcaatggctgcttttctccagcattcttcaaaacatcttcattcgtgttcagcagaagaaacttaaacaggtttgaatattcattagtaaatgatgacagaatttgcatttaaaggtgaactgtccctttaaaagaaCTGCCTCAGAACATTGGCTAACCTTCAAGTAACGTTAACAGAACGTTTGTCCAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011039 False 4192 lncRNA 0.37 2 48414527 48419991
TCONS_00011040 True 1430 lncRNA 0.35 2 48414540 48416504

Neighbor

gene id symbol gene type direction distance location
XLOC_005004 scd coding upstream 9855 48390715 ~ 48404672 (+)
XLOC_005003 ddit4 coding upstream 72268 48340133 ~ 48342259 (+)
XLOC_005002 NA coding upstream 83633 48328866 ~ 48330894 (+)
XLOC_005001 anapc16 coding upstream 86928 48319221 ~ 48327599 (+)
XLOC_005000 ppa1a coding upstream 146661 48241841 ~ 48267866 (+)
XLOC_005006 arhgap44 coding downstream 60641 48480632 ~ 48538302 (+)
XLOC_005007 NA coding downstream 128103 48548094 ~ 48573203 (+)
XLOC_005008 SYDE1 coding downstream 161597 48581588 ~ 48627397 (+)
XLOC_005009 zgc:165653 coding downstream 214936 48634927 ~ 48656276 (+)
XLOC_005010 NA coding downstream 242800 48662791 ~ 48664445 (+)
XLOC_004992 NA non-coding upstream 804197 47606871 ~ 47610330 (+)
XLOC_004991 NA non-coding upstream 833961 47580022 ~ 47580566 (+)
XLOC_004984 NA non-coding upstream 1378107 47035721 ~ 47036420 (+)
XLOC_004973 CABZ01111725.1 non-coding upstream 1810972 46603441 ~ 46603555 (+)
XLOC_005018 NA non-coding downstream 467930 48887921 ~ 48896104 (+)
XLOC_005021 CABZ01075114.1 non-coding downstream 613732 49033723 ~ 49038796 (+)
XLOC_005022 NA non-coding downstream 641171 49061162 ~ 49062445 (+)

Expression


Co-expression Network