G220300 (gars,LOC103369121)


Basic Information

Item Value
gene id G220300
gene name gars,LOC103369121
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 16546928 ~ 16548724 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU298100
TGCCGGTATCCAGTGAGtgctggtttgtttttattgaaattgttAAATATCTCAATCCAATCTGCTTGAAAAATTGAATGGTGGAAGCCTCCTTCCACTGACGACAACAACCTGATTACATTTTCTCCCTTTTAAAACATATTGACATGGTCATACATGGTTGAAATGTTGCTCATTGGGGAAACAACAGTCCTGTGCAAGCTTTCCACAATTGTTAGATATGATGAATACATGACATTTCAGTGATAGTAGTGGCGTAGAACACAAGGAGGGCTCGGTGCACCACTATAGCTTATCACAATACAGTTGCAATATTCTTCCTGTTGATGCATATGCAACAAGTCTGTGGATTTTTATGTAACGATTGGCAGGCGAGTGAGCTTTACTCTTCAACTGTGTCCTTCTTGCTGGTCTCCTGTCCTTCAAAGATGGGGTACTTGCTCTCCACTTCTGCCCAGGTCAATCTGCCGTTGGCCAAATCCCGAATAATCACAGGCAACTCGCTGAcCTCGGCCCTGATCTGCCTCATTGAGTCGCGGTCTCTCAGCGTGGCTGTGTGAGGCGTCTTGTTCACTGTGTCGAAGTCAATGGTGATGCCAAACGCCACTCCGATCTCGTCCGTCCTGGCGTAGCGCCTGCCGATGGATCCTGCGGAATCGTCCACTTTGTAAGACACACCATTTTTGGTCATTGCCTCAGCTAacagggaaaaagagagagcgagagaaaaaaaagttaaccaagacagcagcaacagcacaTCCC

Function

symbol description
gars Predicted to enable several functions, including bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity; glycine-tRNA ligase activity; and identical protein binding activity. Predicted to be involved in diadenosine tetraphosphate biosynthetic process and tRNA aminoacylation for protein translation. Predicted to act upstream of or within glycyl-tRNA aminoacylation. Predicted to be located in several cellular components, including axon; extracellular exosome; and secretory granule. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2D and distal hereditary motor neuronopathy type 5A. Orthologous to human GARS1 (glycyl-tRNA synthetase 1).

NR:

description
PREDICTED: glycine--tRNA ligase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU298100 True 765 lncRNA 0.46 2 16546928 16548724

Neighbor

gene id symbol gene type direction distance location
LOC120551893 LOC103377216,LOC107591252,LOC101472906,LOC100709944 coding downstream 12130 16527664 ~ 16534798 (-)
hhatlb hhatl coding downstream 19878 16519042 ~ 16527050 (-)
klhl40b klhl40 coding downstream 28990 16514192 ~ 16517938 (-)
sec22c sec22c coding downstream 82912 16458333 ~ 16464016 (-)
kpna1 kpna1 coding downstream 200856 16339112 ~ 16346072 (-)
plcd1a NA coding upstream 52905 16601629 ~ 16621681 (-)
LOC120552381 LOC104957866 coding upstream 330771 16879495 ~ 16881724 (-)
bdh1 bdh1,LOC103373205,LOC107382809 coding upstream 401931 16950655 ~ 16965739 (-)
gyg1b gyg1 coding upstream 417921 16966645 ~ 16977681 (-)
cpb1 cpb1 coding upstream 431200 16979924 ~ 16987685 (-)
G220273 NA non-coding downstream 65770 16479383 ~ 16481158 (-)
G220272 nktr,LOC102798446 non-coding downstream 69413 16472248 ~ 16477515 (-)
G220257 NA non-coding downstream 96707 16447930 ~ 16450221 (-)
G220254 NA non-coding downstream 180315 16365204 ~ 16366613 (-)
G220243 NA non-coding downstream 207891 16337818 ~ 16339037 (-)
G220373 NA non-coding upstream 145863 16694587 ~ 16701557 (-)
G220382 NA non-coding upstream 193563 16742287 ~ 16745412 (-)
G220443 NA non-coding upstream 338532 16887256 ~ 16888024 (-)
G220445 NA non-coding upstream 349465 16898189 ~ 16898537 (-)
LOC120551964 NA non-coding upstream 566506 17115230 ~ 17398235 (-)
drd3 drd3 other downstream 262193 16266303 ~ 16284735 (-)
G220124 NA other downstream 481707 16064670 ~ 16065221 (-)
G220117 usp12,LOC107701680,LOC107705210 other downstream 542164 16003879 ~ 16004764 (-)
si:ch211-140b10.6 polr1d other downstream 573265 15968731 ~ 15973663 (-)
mtfr1 NA other downstream 866040 15676254 ~ 15680888 (-)
LOC120552205 LOC100711537,LOC102295084,LOC108230444,LOC106948898,LOC103140410 other upstream 233348 16782072 ~ 16795124 (-)
G220412 csrnp1,LOC104937158,LOC102793366 other upstream 325925 16874649 ~ 16875300 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other upstream 1878038 18426762 ~ 18483776 (-)
G220833 NA other upstream 2061512 18610236 ~ 18697970 (-)
LOC120552352 colec12,LOC102798044 other upstream 2224253 18772977 ~ 18810944 (-)

Expression


Co-expression Network