G220412 (csrnp1,LOC104937158,LOC102793366)


Basic Information

Item Value
gene id G220412
gene name csrnp1,LOC104937158,LOC102793366
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 16874649 ~ 16875300 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU298248
CATTTGATACCGGCTAGGCTGCAGCTACAGGTCTCAGGCTCGCAGAAGCCCTGGCAGTCACAACCGCAGTTCTCCCTGGAGATCCTCAGTTCATGCAGCtgtctcttctcctccttttcGATCTTCTTCACACCGGCTGCTTTGAGCAGTCCGTAGCGACGTTTTGGCGGGTAGGGCTGGAGGAAAGAGCCCTCGTCCAAATTGGCCCCACTGATGTCGATGTCCTGCTCAGGGATGTCGTCCACCGTTAGCTGTTCCGCCTCCTCGTTCTCTTGGGTTCCGTTCTTAGTTAGCTTCAATTTGAGAGCCTCCAGCTTTTCCTCTCTGAGTCTGTTAAGGAATTTTTCCCGGCGTAGGAGCCGCTGCTCCACAGCAAACTCAGCAAGTGAATATGTGCGGAGCGTGCTGTGGCGCTGCATCATGCCTAGAGTGCATCCTCCCCGACTGGGAACACTAGTGAAGCCCTGGCACCGAGGGAAGAAGAACACTGTCACCTGGTCAAAGGTCACGTTGCCCCGTCGTGGTCTCTTGGATTTCTTAAGG

Function

symbol description
csrnp1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including face morphogenesis; platelet-derived growth factor receptor signaling pathway; and roof of mouth development. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: cysteine/serine-rich nuclear protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU298248 True 543 TUCP 0.55 2 16874649 16875300

Neighbor

gene id symbol gene type direction distance location
plcd1a NA coding downstream 252968 16601629 ~ 16621681 (-)
LOC120551893 LOC103377216,LOC107591252,LOC101472906,LOC100709944 coding downstream 339851 16527664 ~ 16534798 (-)
hhatlb hhatl coding downstream 347599 16519042 ~ 16527050 (-)
klhl40b klhl40 coding downstream 356711 16514192 ~ 16517938 (-)
sec22c sec22c coding downstream 410633 16458333 ~ 16464016 (-)
LOC120552381 LOC104957866 coding upstream 4195 16879495 ~ 16881724 (-)
bdh1 bdh1,LOC103373205,LOC107382809 coding upstream 75355 16950655 ~ 16965739 (-)
gyg1b gyg1 coding upstream 91345 16966645 ~ 16977681 (-)
cpb1 cpb1 coding upstream 104624 16979924 ~ 16987685 (-)
agtr1b agtr1 coding upstream 112509 16987809 ~ 16994577 (-)
G220382 NA non-coding downstream 129237 16742287 ~ 16745412 (-)
G220373 NA non-coding downstream 173092 16694587 ~ 16701557 (-)
G220300 gars,LOC103369121 non-coding downstream 325925 16546928 ~ 16548724 (-)
G220273 NA non-coding downstream 393491 16479383 ~ 16481158 (-)
G220272 nktr,LOC102798446 non-coding downstream 397134 16472248 ~ 16477515 (-)
G220443 NA non-coding upstream 11956 16887256 ~ 16888024 (-)
G220445 NA non-coding upstream 22889 16898189 ~ 16898537 (-)
LOC120551964 NA non-coding upstream 239930 17115230 ~ 17398235 (-)
G220488 NA non-coding upstream 323091 17198391 ~ 17201334 (-)
G220611 NA non-coding upstream 676460 17551760 ~ 17552963 (-)
LOC120552205 LOC100711537,LOC102295084,LOC108230444,LOC106948898,LOC103140410 other downstream 79525 16782072 ~ 16795124 (-)
drd3 drd3 other downstream 589914 16266303 ~ 16284735 (-)
G220124 NA other downstream 809428 16064670 ~ 16065221 (-)
G220117 usp12,LOC107701680,LOC107705210 other downstream 869885 16003879 ~ 16004764 (-)
si:ch211-140b10.6 polr1d other downstream 900986 15968731 ~ 15973663 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other upstream 1551462 18426762 ~ 18483776 (-)
G220833 NA other upstream 1734936 18610236 ~ 18697970 (-)
LOC120552352 colec12,LOC102798044 other upstream 1897677 18772977 ~ 18810944 (-)
mettl4 mettl4 other upstream 2063613 18938913 ~ 18949495 (-)
G221048 ankh other upstream 2440291 19315591 ~ 19326894 (-)

Expression


Co-expression Network