LOC120551964


Basic Information

Item Value
gene id LOC120551964
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 17115230 ~ 17398235 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU298327
ATTTCACGCCATATTTGAATTTGACAGGTTGTTTTGGCGTTAATTGGACTTTCCTGAACTCTCTTGCAATAAGACTTATTTTTGTTAATTTACTGACGTACGATATCGATTGGATTTCTGCCGAATTGTTGCTGAGATGTAGCCTACACCTAGCTGTCCTTTCAACACTTATGTGATAAACAACTTTGCTAGCAGATAATGCCTAAAAACAGCTGCTTCACTAGACTGTTGCCTTTAAGGACCGACGGCCATGACCACTTCAGGCTTCAAAACTGATGAAAAACACCCAGCATGCGACGTCATAAAGGATCTTATTGTGAAGGAGGATTTTTAAAGAATGAACTTCGTGTAGACCCGCCAAGAAGACCTTCAAATACATGGAGGGGAGACTCATCTCGCACTCAAATATCTCCGTGGGGAATGGAAAGATGGCAGAGATGCATGCCGAGGCCACTCCTTTTATCCGGGCCTCAGAAAGAGAAACATTGGCACAGTTGACAgggaaaatgtgacattttctgCACTGTGATACCTCACATCTTCAAATTGATGCCTTGTCGGAAATAGACAGAAGGAGGCGTAATGAATGTGCTTCGGTGACACAAAGACACGCCACCAGGACATTGTGGGGTCTCTGCTCTGGAGCATTCTGGCTGGTTTGCTTTTTAAAGCACAGAGGGCCAGCTGTTTATGTTATTCAAATTTAGAGCAGTGGTAGAAAATGTGCGTCCATCTACTGTAGCGGGGGATAATAGTTTGGACAAATGCATCCATTTCGAAAACCACTTTTTATGCTATTTCAGTCAATCAGACGACATTTGAAAGTATTTTCTGTGACACTGCTTGAATGTCTCTTTATATGCAGCTGAAACTTGGATAAAAGATTCAAATGATTGTCATTTTCTTCAGTATTCACGCTGTCATCTCCACATAGCGACTGAATCATTTGTCCTTTGGTTGGAGACCGTGTTACTCTATGTGTGGCGTACAAACAGACTCATGGGAGGTCATGGGAGTTCTGTGCTGACAATCAAGGGACCAGCTGTCACTCATAGCCCCATCACCAGCACAACTCAATGGCTCATTTCTGgcacatttctctttttttggcaGGTATATATCAGCGTGATGGATTGGCATTAGAGAAAATCTTTCATCAAGACTCAAATATAGTCCTAATCACCCTCATTGTGAGGCATGAAGGCACTTGCACGTTTTATTATAGAAAggttacatactgtatgtatgtatagatCAGATGAGCTACTACCCCGTGTTTGACACCACCCGTCTTGTTCCAAACATGTTCATTTAATGTGAATGTCATTTAAcactatgaattaaat
>XR_005637940.1
ACGCGAAGAAGACATTTCACGCCATATTTGAATTTGACAGGTTGTTTTGGCGTTAATTGGACTTTCCTGAACTCTCTTGCAATAAGACTTATTTTTGTTAATTTACTGACGTACGATATCGATTGGATTTCTGCCGAATTGTTGCTGAGATGTAGCCTACACCTAGCTGTCCTTTCAACACTTATGTGATAAACAACTTTGCTAGCAGATAATGCCTAAAAACAGCTGCTTCACTAGACTGTTGCCTTTAAGGACCGACGGCCATGACCACTTCAGGCTTCAAAACTGATGAAAAACACCCAGCATGCGACGTCATAAAGGATCTTATTGTGAAGGAGGATTTTTAAAGAATGAACTTCGTGTAGACCCGCCAAGAAGACCTTCAAATACATGGAGGGGAGACTCATCTCGCACTCAAATATCTCCGTGGGGAATGGAAAGATGGCAGAGATGCATGCCGAGGCCACTCCTTTTATCCGGGCCTCAGAAAGAGAAACATTGGCACAGTTGACAgggaaaatgtgacattttctgCACTGTGATACCTCACATCTTCAAATTGATGCCTTGTCGGAAATAGACAGAAGGAGGCGTAATGAATGTGCTTCGGTGACACAAAGACACGCCACCAGGACATTGTGGGGTCTCTGCTCTGGAGCATTCTGGCTGGTTTGCTTTTTAAAGCACAGAGGGCCAGCTGTTTATGTTATTCAAATTTAGAGCAGTGGTAGAAAATGTGCGTCCATCTACTGTAGCGGGGGATAATAGTTTGGACAAATGCATCCATTTCGAAAACCACTTTTTATGCTATTTCAGTCAATCAGACGACATTTGAAAGTATTTTCTGTGACACTGCTTGAATGTCTCTTTATATGCAGCTGAAACTTGGATAAAAGATTCAAATGATTGTCATTTTCTTCAGTATTCACGCTGTCATCTCCACATAGCGACTGAATCATTTGTCCTTTGGTTGGAGACCGTGTTACTCTATGTGTGGCGTACAAACAGACTCATGGGAGGTCATGGGAGTTCTGTGCTGACAATCAAGGGACCAGCTGTCACTCATAGCCCCATCACCAGCACAACTCAATGGCTCATTTCTGgcacatttctctttttttggcaGGTATATATCAGCGTGATGGATTGGCATTAGAGAAAATCTTTCATCAAGACTCAAATATAGTCCTAATCACCCTCATTGTGAGGCATGAAGGCACTTGCACGTTTTATTATAGAAAggttacatactgtatgtatgtatagatCAGATGAGCTACTACCCCGTGTTTGACACCACCCGTCTTGTTCCAAACATGTTCATTTAATGTGAATGTCATTTAAcactatgaattaaatatgacTACATGTATTTGGATTAAATCTATCCATAT
>XR_005637941.1
CACGCGAAGAAGACATTTCACGCCATATTTGAATTTGACAGGTTGTTTTGGCGTTAATTGGACTTTCCTGAACTCTCTTGCAATAAGACTTATTTTTGTTAATTTACTGACGTACGATATCGATTGGATTTCTGCCGAATTGTTGCTGAGATGTAGCCTACACCTAGCTGTCCTTTCAACACTTATGTGATAAACAACTTTGCTAGCAGATAATGCCTAAAAACAGCTGCTTCACTAGACTGTTGCCTTTAAGGACCGACGGCCATGACCACTTCAGGCTTCAAAACTGATGAAAAACACCCAGCATGCGACGTCATAAAGGATCTTATTGTGAAGGAGGATTTTTAAAGAATGAACTTCGTGTAGACCCGCCAAGAAGACCTTCAAATAagacccacagaCACCCCGGCCAGATGATCCATCCCAGGAATAGCGTTCAACATCTGGCGGACAGGGTTTTGTCTCCTGCTACATCTCCTGGGTTGCCCTTTACCGGACCCCTGCACATCCTGATGGATCACCTGCTGAATGGGATGGATGGTGCTTCTTTCCCCCTCTGCACCTTCTATGCCATTTAATGCTATCTGCGCCGCTAATATGTCATTCTCCTAGGCCATTGGTTACTGTGCAGGGGCTTCCGTATGCTTTACATATGCGCTTGTGTTTGCATATGCCCACCCATGTGAATCCCTGACCCATACCCGCAGCTCCAGTTGGGCTGCCACCCCTGTACACACCCAGGAGACGTGCTCTCTCCTGGAACAATTTGTCTCATCTTTTGCCATTCTTCATCTACAGTAAAGAGCGGctcttttaaacacatttttgcaGGGTTATGCTGTGTGCTGTGCTTATGTCCTCCGCcca
>XR_005637942.1
ACACGCGAAGAAGACATTTCACGCCATATTTGAATTTGACAGGTTGTTTTGGCGTTAATTGGACTTTCCTGAACTCTCTTGCAATAAGACTTATTTTTGTTAATTTACTGACGTACGATATCGATTGGATTTCTGCCGAATTGTTGCTGAGATGTAGCCTACACCTAGCTGTCCTTTCAACACTTATGTGATAAACAACTTTGCTAGCAGATAATGCCTAAAAACAGCTGCTTCACTAGACTGTTGCCTTTAAGGACCGACGGCCATGACCACTTCAGGCTTCAAAACTGATGAAAAACACCCAGCATGCGACGTCATAAAGGATCTTATTGTGAAGGAGGATTTTTAAAGAATGAACTTCGTGTAGACCCGCCAAGAAGACCTTCAAATAATCTCCAAAAAGTTTCCAAACACCTATGAGCCATTGACGTCCACTCCAGCCCGTCTCTGACTGGGAACATCCATCCACTCAATGGGACGTGTCACGGCAGCGCATGTCCCCTCACaaaagacaattgtgatttagACAAACATTGGGGAAAACATAAAGGCAAAGGTCAAGTCCTCTTTCAGTTCAAGTGTTCTCCGATTCACCTACAGCACAAACGGGGACAAAGAGTTGCAGCTATACCTCCGTTTCTAAAGGGGATGTGATTACCCGCTTCAtggtggaggaggaagatgcGGACTCTCAACCTGATTCAGATGAAATTAAGAGCAAGAGTATTCTCCACACATCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU298327 False 1346 lncRNA 0.42 3 17141102 17398220
XR_005637940.1 True 1394 lncRNA 0.41 3 17141067 17398233
XR_005637941.1 False 867 lncRNA 0.47 3 17373716 17398234
XR_005637942.1 False 741 lncRNA 0.43 3 17115230 17398235

Neighbor

gene id symbol gene type direction distance location
zic1 zic1 coding downstream 15551 17096251 ~ 17099679 (-)
agtr1b agtr1 coding downstream 120653 16987809 ~ 16994577 (-)
cpb1 cpb1 coding downstream 127545 16979924 ~ 16987685 (-)
gyg1b gyg1 coding downstream 137549 16966645 ~ 16977681 (-)
bdh1 bdh1,LOC103373205,LOC107382809 coding downstream 149491 16950655 ~ 16965739 (-)
dipk2ab LOC104937275,LOC103365306 coding upstream 20394 17418629 ~ 17446009 (-)
chst2b chst2 coding upstream 114549 17512784 ~ 17516181 (-)
pcolce2b pcolce2 coding upstream 134831 17533066 ~ 17542989 (-)
acad11 acad11,LOC102785504 coding upstream 154948 17553183 ~ 17574031 (-)
nphp3 nphp3 coding upstream 179434 17577669 ~ 17589090 (-)
G220445 NA non-coding downstream 216693 16898189 ~ 16898537 (-)
G220443 NA non-coding downstream 227206 16887256 ~ 16888024 (-)
G220382 NA non-coding downstream 369818 16742287 ~ 16745412 (-)
G220373 NA non-coding downstream 413673 16694587 ~ 16701557 (-)
G220300 gars,LOC103369121 non-coding downstream 566506 16546928 ~ 16548724 (-)
G220611 NA non-coding upstream 153525 17551760 ~ 17552963 (-)
G220665 NA non-coding upstream 512284 17910519 ~ 17910741 (-)
G220659 NA non-coding upstream 526336 17924571 ~ 17924957 (-)
LOC120552218 NA non-coding upstream 541023 17939258 ~ 17972500 (-)
G220687 rbm33 non-coding upstream 612548 18010783 ~ 18015252 (-)
G220412 csrnp1,LOC104937158,LOC102793366 other downstream 239930 16874649 ~ 16875300 (-)
LOC120552205 LOC100711537,LOC102295084,LOC108230444,LOC106948898,LOC103140410 other downstream 320106 16782072 ~ 16795124 (-)
drd3 drd3 other downstream 830495 16266303 ~ 16284735 (-)
G220124 NA other downstream 1050009 16064670 ~ 16065221 (-)
G220117 usp12,LOC107701680,LOC107705210 other downstream 1110466 16003879 ~ 16004764 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other upstream 1028527 18426762 ~ 18483776 (-)
G220833 NA other upstream 1212001 18610236 ~ 18697970 (-)
LOC120552352 colec12,LOC102798044 other upstream 1374742 18772977 ~ 18810944 (-)
mettl4 mettl4 other upstream 1540678 18938913 ~ 18949495 (-)
G221048 ankh other upstream 1917356 19315591 ~ 19326894 (-)

Expression


Co-expression Network