G220742 (dnajb6)


Basic Information

Item Value
gene id G220742
gene name dnajb6
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 18188724 ~ 18201518 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU298696
tcctcctcctcctcctcctgctgaaAGGCCATCTTTGCCATATCTGTCATAAGTACTCctcttgttttCATCTGAGAGCACTTCATATGCCTCTGACAGCTCTTTGAACCTTTTCTCTGCTTCCTCTTTGTTGTCTGGGTTCTTGTCTGGATGCCACTTCAGTGCCAATTTTCTGTAAGCTTTTTTGATGTCCTCTTGCGTTGCATTTTTCTGGACTCCTAATGTCTGGTAGTATTCCAGCATGGCTCAGTCCTGTGTGAGGGTCCTCAAGGCCTCTGTTTAAAGGAAGTGTCCGCTCAAAGGGCCTCTCTTTTGTCGCTATTTCCCTGTCTTCGCCTGCCTGAGTGAAGAATCTGTAGGTAACTGCAGCCGCTGGTGGCTGTTGGAGGAGTAGCTAGCTACTGATATCGACTAACCCactatgctgctgctgctgctgctttcaaGTACTGTCGGATATCGAAATTGTCACATAAACGCACATGGGTGGGCTGTGGATACCCTTCAAACCAAACAGAATAGTAGTTGGGAGTGTAATTTATCATTTTCACAGACAATGTCATTACTGACTGGCCGTTGGACAGGTTGTCTATGAGGCAATTT

Function

symbol description
dnajb6 Enables several functions, including chaperone binding activity; identical protein binding activity; and unfolded protein binding activity. Involved in several processes, including intermediate filament organization; negative regulation of cysteine-type endopeptidase activity involved in apoptotic process; and negative regulation of inclusion body assembly. Located in several cellular components, including Z disc; nucleoplasm; and perinuclear region of cytoplasm. Implicated in autosomal dominant limb-girdle muscular dystrophy type 1.

NR:

description
dnaJ homolog subfamily B member 6 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU298696 True 603 lncRNA 0.47 4 18188724 18201518

Neighbor

gene id symbol gene type direction distance location
mnx1 mnx1 coding downstream 40624 18145295 ~ 18148100 (-)
lmbr1 lmbr1,LOC102779560 coding downstream 55741 18098246 ~ 18132983 (-)
shha shh,LOC102780316 coding downstream 155496 18024594 ~ 18033228 (-)
LOC120552245 NA coding downstream 344436 17751382 ~ 17844288 (-)
LOC120552246 dlgap1,LOC100706187,LOC106534655 coding downstream 436926 17727065 ~ 17751798 (-)
ptprn2 ptprn2,LOC102778033 coding upstream 29948 18231466 ~ 18357998 (-)
ncapg2 ncapg2 coding upstream 157986 18359504 ~ 18374026 (-)
esyt2b esyt2 coding upstream 173202 18374720 ~ 18407925 (-)
LOC120552023 LOC103373088 coding upstream 411632 18613150 ~ 18617399 (-)
chmp4c chmp4c,LOC107086476,LOC106961905 coding upstream 416147 18617665 ~ 18620964 (-)
G220695 NA non-coding downstream 85568 18066795 ~ 18103156 (-)
G220688 NA non-coding downstream 139240 18049016 ~ 18049484 (-)
G220685 NA non-coding downstream 166835 18020560 ~ 18021889 (-)
G220687 rbm33 non-coding downstream 173472 18010783 ~ 18015252 (-)
LOC120552218 NA non-coding downstream 216224 17939258 ~ 17972500 (-)
G220732 dnajb6 non-coding upstream 5847 18207365 ~ 18214389 (-)
LOC120552692 NA non-coding upstream 270607 18472125 ~ 18578077 (-)
G220839 zfand1 non-coding upstream 421173 18622691 ~ 18623385 (-)
G220860 NA non-coding upstream 538899 18740417 ~ 18740616 (-)
G220888 NA non-coding upstream 614388 18815906 ~ 18816378 (-)
G220412 csrnp1,LOC104937158,LOC102793366 other downstream 1313424 16874649 ~ 16875300 (-)
LOC120552205 LOC100711537,LOC102295084,LOC108230444,LOC106948898,LOC103140410 other downstream 1393600 16782072 ~ 16795124 (-)
drd3 drd3 other downstream 1903989 16266303 ~ 16284735 (-)
G220124 NA other downstream 2123503 16064670 ~ 16065221 (-)
G220117 usp12,LOC107701680,LOC107705210 other downstream 2183960 16003879 ~ 16004764 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other upstream 225244 18426762 ~ 18483776 (-)
G220833 NA other upstream 408718 18610236 ~ 18697970 (-)
LOC120552352 colec12,LOC102798044 other upstream 571459 18772977 ~ 18810944 (-)
mettl4 mettl4 other upstream 737395 18938913 ~ 18949495 (-)
G221048 ankh other upstream 1114073 19315591 ~ 19326894 (-)

Expression


Co-expression Network