LOC120552352 (colec12,LOC102798044)


Basic Information

Item Value
gene id LOC120552352
gene name colec12,LOC102798044
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 18772977 ~ 18810944 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU298903
TGAATGTATATTTCATTATCCAAGTTTTGTAGGAAATTATAAATTCTATGAAGCCAAGTGGACTTACTGTTGTGCTTTTCATGACATGTAATTGCCTTAAAATGAAAAGGTGCAAAATGATGcgcaaaaaaacatgaaatgtcgCTGATATGCTATCTTTGGGGAACCTGTTATCTAACCTCATGAATGTCtatatagcattttcatttATACGAGTAGAAACCAAAGGAAATATTTAcacataaatacagaaaaatgtcACAATCAGCTTGAGTTTTAGTTCAAGACTGAACGTTTACAGTTTAATACTCAATGTATGATACAGTATTTTGTGATTATGAGATTTATTTTTCACTATTACAGACGTACATATGTTTATGAATATGAATCTGTGGATGCTACCTACAAATATAAAATGTGCCATTTTCTGCACTCAGGTACTGTTTCCTGTTAAGAAAAACACTTAAACAACACTACAAAAGATGAAGGAAACACTCacaaataaatatgtaaaaac
>XM_039790345.1
GAATTAAACAAACAACTGTGTTTAACAGTGCGCTTTAGAGGTAACGTTAATGGTAAGTGACTTTTGTTACCTTTCTTTGAGAACATGGCTAGACTAGTTTCCCTCACGTTTCCAGTCTAAAGCTAACTAACGGTTGGCCATAGcaacatttcccaaaatgtcaaattatttcTTTAATTGAGATCTTGTGTTTGGAGGCATCAACATATAAGCTAAATATTAAGAGTGAAGAGTATTTTTATAGAACagtcattattattttatactgtaggCCTATCTTTGCTCTCTCTACGCAACAACAAAAACGATTTAATTGTGAAAGCGACACCGGAAGTGCAGCCCGTCTTTCTGTTTACCACTGGTAGTAACCTGGTAGTAACAGACATCACTTCTTCCTCCTTCAGGCTCCGGGAACATCACATCACTCCTGCAAAAACTCCTCTGAAACTAAGCTAGCAAGAGACAATGGGATTTTAAACTGAAGACTCAACATGAAGACATACTCATAGttgtattatttcttttattagtgtgtgtCGTTCTTCGTGAAACAAGTTTACACCTTTGCACTGGATGCTGAGATGCGCAGAAAGTGACAGCGGTCCTCATCTCTTCTACAGTCCTCAACGAGTTACAAAACGCCATGAAAGACGACTTTGCAGACGAGGAGGAAGTGCAGTCTTTTGGATACAAGAGGTTCGGGATCCAGGAGGGCACCCAGTGCACTAAGTGTAAAAATGAATGGGCGCTGAAGACCTCCATAGCTCTGCTCTATGTGCTGTGTACTCTCCTCACCATCGCTGTTGCTGTGCTTGGATATAAAGTGGTGCAAAGAGTTGACAGTGTGTCTGAAGGTATTGCAAACTATGGAGGAAAGATAAAAGCTGTTGAGACTGATTTGAAAAAGCTCGATGATCAAGCAGGGGAGAAGTCAGAGAATACCACCACAGAGATCCAGGCATTTAAGAACAACATCTGGACACTCCAGAGGCAGCTGTCTGCGGTGGAGGAACACATCCACAGCGATCAAGTTAAGCTGGGTCAGCTGCAGAGCATTGGCTCAGACATTCAGAAAAGTCAGGGCTCCATTCAGGGACTGCTGGACAGCAACACAGCCACCTTGCACTCTGTAAATGGCACCCTGCAGTCTTATGGTGGCACCATTGGGGGTCTGCAGGACGACACGGCCCGGCTGCAGAGAGAACTCCAGCAGCAGGTGAAACTTCAGGACCAGGCGCTGCTCAGCATCAGCAGCCTCAACTTCACACAGGCCCAGCAGAGAGGCCTCATTGCCGTTCTGCAGCGCTCAGTGGATGACACCAGCCAGGCCATCCAGAAAATGCGCAATGACTTTCAGAGCCTCGAGCAGAAGGCCCGGCAGGCGCACTCTGATACCGAGTGGCTTCGTAATAAGGTGGAAAACCTGCAGGTCATGGCCGGTAACACCTCGGCTCTTGCAAAAGCCAACAACGACAGCCTGGAGGAGGTGGGATCACAGCTGGCTTTCATGGCCAACCAGCTCCAGAACACCAGCAGCCTGGCTGATGCTCACGACCAGACCCTGAGGGAGATCATGGACCGGCAGAGGGACTTCGGTAACCTCACGTCCACCAAGTTTGACCGGCTGGAGGTGCGCCTGGATGAGTCGGAGCAGAGCATGGACCGCGTGACCGGCAACATCAGCTTCACCACGCAGCTCCTGGGCGCCATCAACCTCAACCTGAACGACTTGCGCATGTGCTCCGAGACCGTCGGCCGTCACTCGGACTTCTTGCTGAACCTCAACAGCAGCGTGACAGACGTGAGGACAGACGCAGACGGTCTGAGGTCCCAGCAGGAAGAGCTGGCAGCACGGGTGGACAAGGAGGTCACCAGCCTCTCTATTGTCATGGAGGAGATGAAGCTGGTGGACAACAAGCACTCCCAACTAATAACCAATTTCACTATTTTACAGGGTCCCCCTGGTCCCAGAGGACCAAGGGGGGACAAAGGACCTCAGGGACCATCTGGTCAGCCTGGCCagaagggagagaaaggggaaaaTGGTGGTCCAGGGATACGAGGACCCAGAGGAGAGCAGGGTTTCCCCGGACCATCAGGTCTGCCAGGGTTAAAAGGCCTGCCAGGCGTATCTGGCAGCCCTGGATCCAAGGGCTCCCGAGGGTCAGGAGGAAGGGCCGGACCTCCTGGAGCTAAGGGAGAGCCAGGTACTGCCGGTCTGCCTGGAAGAGACGGACAGCCTGGTCCTCAGGGGGCACAGGGCCCACCGGGTATCAGAGGCGCAATGGGACCAGCTGGTGAGCAAGGGCCAAGGGGACTGCTGGGACCAGTGGGGCCCCCGGGGCCACCAGGACCACCGGGACAACCAGGGATTCCAATCCGGGCTCCGTTAATTCCTTTGGGCCCTGTGTCTCTGCAGGATGAGGCAGTAGCTCCTACACTCTGGGACCCAGGATGCCCTTTTGAGTGGGTGAACTACAGAGACAAGTGCTACTTTTTCTCTAAGGACCTTCACAGTTTTGATGACGCAAAGGCAACCTGCGAATCAACGTCCGCTTCATTATTGATCATCAACGATATGGAGGAACAGAAATGGCTGAAGAAGCAGACCTTTGGAAAGGGCTACTTCTGGATGGGTCTGACCGACAGGGAGGAGGAAAACGTTTGGCGCTGGCTGGATGGGACTGAACCTGCTTTCGCGAAGTGGAAGCCTGGTCAGCCTGACGACTGGGGCCATGGACATGAAATGGGAGAAGACTGTGCGGGGCTCATCCATGAAGGGTTGTGGAATGATTTCTTCTGTGAAGATCTCATAAGCTACATCTGTGAGAAGGAAATGGAGACCTCAAGATTGCCTGGATCGTAGCGATGTCTTGAAAGGGAGCTTGCAGTGAGCAGCTAGACACGTGGCACTGGTCCACCGACACGGTGCGTGGAGAGTCCATACGGAGAGAGCAAAGGGACAATTTTGAAACGAGCCCAGGGCTGCAACAGCGAACGTCTCTCCAATGCTGAAGAGACGCCTTTCTCCTCCAAAGTAAACCCAGTCCAACATCACCAGCAAGTGCAATACAGCAGGGCAATCACAGAaggaggactttttttttttttaaagtaccaAATCACCAATCGAttgatatatagatatatagatatatatatatctatatatatatatatctttttttatggttatttgaaatacattttataaatcTGTATTCCACGTGCAACTGAATATCTGAATGTATATTTCATTATCCAAGTTTTGTAGGAAATTATAAATTCTATGAAGCCAAGTGGACTTACTGTTGTGCTTTTCATGACATGTAATTGCCTTAAAATGAAAAGGTGCAAAATGATGcgcaaaaaaacatgaaatgtcgCTGATATGCTATCTTTGGGGAACCTGTTATCTAACCTCATGAATGTCtatatagcattttcatttATACGAGTAGAAACCAAAGGAAATATTTAcacataaatacagaaaaatgtcACAATCAGCTTGAGTTTTAGTTCAAGACTGAACGTTTACAGTTTAATACTCAATGTATGATACAGTATTTTGTGATTATGAGATTTATTTTTCACTATTACAGACGTACATATGTTTATGAATATGAATCTGTGGATGCTACCTACAAATATAAAATGTGCCATTTTCTGCACTCAGGTACTGTTTCCTGTTAAGAAAAACACTTAAACAACACTACAAAAGATGAAGGAAACACTCacaaataaatatgtaaaaactaaa

Function

symbol description
colec12 Predicted to enable low-density lipoprotein particle binding activity and pattern recognition receptor activity. Acts upstream of or within vasculogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of collagen trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including cardiovascular system; epidermis; mesoderm; musculature system; and periderm. Orthologous to human COLEC12 (collectin subfamily member 12).

NR:

description
PREDICTED: collectin-12

GO: NA

KEGG:

id description
K10062 COLEC12; collectin sub-family member 12

RNA

RNA id representative length rna type GC content exon number start site end site
TU298903 False 517 lncRNA 0.31 1 18772981 18773497
XM_039790345.1 True 3763 mRNA 0.48 10 18772977 18810944

Neighbor

gene id symbol gene type direction distance location
LOC120551921 tmem236,LOC104961611,LOC102297878 coding downstream 10131 18756353 ~ 18762846 (-)
mrc1a mrc1 coding downstream 18377 18741999 ~ 18754600 (-)
LOC120551919 slc39a12 coding downstream 32891 18731524 ~ 18740086 (-)
cacnb2a cacnb2 coding downstream 44378 18659277 ~ 18728599 (-)
arl8 arl5b,LOC103373092,LOC100708858,LOC106590131 coding downstream 124352 18640257 ~ 18648625 (-)
enosf1 enosf1 coding upstream 11038 18821982 ~ 18826882 (-)
LOC120552191 yes1 coding upstream 20643 18831587 ~ 18853616 (-)
LOC120552316 lpin2 coding upstream 178237 18989181 ~ 19005165 (-)
myom1b myom1,LOC100698284,LOC102794243 coding upstream 195699 19006643 ~ 19036833 (-)
chmp5b chmp5,LOC104949656,LOC108230516 coding upstream 243316 19054260 ~ 19058076 (-)
G220860 NA non-coding downstream 32361 18740417 ~ 18740616 (-)
G220839 zfand1 non-coding downstream 149592 18622691 ~ 18623385 (-)
LOC120552692 NA non-coding downstream 194900 18472125 ~ 18578077 (-)
G220732 dnajb6 non-coding downstream 558588 18207365 ~ 18214389 (-)
G220742 dnajb6 non-coding downstream 571459 18188724 ~ 18201518 (-)
G220888 NA non-coding upstream 4962 18815906 ~ 18816378 (-)
G220893 NA non-coding upstream 18807 18829751 ~ 18829985 (-)
G220972 NA non-coding upstream 229321 19040265 ~ 19043216 (-)
LOC120552156 NA non-coding upstream 505710 19316654 ~ 19317227 (-)
G221086 NA non-coding upstream 561647 19372591 ~ 19374516 (-)
G220833 NA other downstream 75007 18610236 ~ 18697970 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other downstream 289201 18426762 ~ 18483776 (-)
G220412 csrnp1,LOC104937158,LOC102793366 other downstream 1897677 16874649 ~ 16875300 (-)
LOC120552205 LOC100711537,LOC102295084,LOC108230444,LOC106948898,LOC103140410 other downstream 1977853 16782072 ~ 16795124 (-)
drd3 drd3 other downstream 2488242 16266303 ~ 16284735 (-)
mettl4 mettl4 other upstream 127969 18938913 ~ 18949495 (-)
G221048 ankh other upstream 504647 19315591 ~ 19326894 (-)
LOC120552536 fbxl7 other upstream 2024234 20835178 ~ 20862688 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other upstream 2406736 21217680 ~ 21221667 (-)
tfr1b NA other upstream 3179073 21990017 ~ 22011086 (-)

Expression


Co-expression Network