G221143 (abcf2)


Basic Information

Item Value
gene id G221143
gene name abcf2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 19652354 ~ 19656460 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU299262
GTTGTCACTGTACTTGAAGCTCACGTTCTGAACCATGATAACAGGAGGAGGAATCTTCCCACAGGgaggaaaacaaaatgacagaGTCTGTGGGAGACAGAGGCAGGTATTAGTACCATAACaatattagggctgcagctatcgattctttttgtaatcgattaatctgattttttttgcgtttttaaacaacccaaactagggggaaaaaaagcaatgtttttggaaaaagcaacatttgtattgcctacattgcttagaatatcatctctcaaaaaactaaacatattaagtgcatttaagtgccatattacattgtttttaaagatttttttttctcaaatgatatcaacctcaaactaaggcatacattaaacatacacaaacattacattaagttgtgcaacttaactttcagaactacaagtttcaacctgagactgatctgtatatacagtaggcctatatgtaaatatcagttatactcaacctattttcatttatatatttgattatgtcacacagctctgttacacttatgctattagatcgttgatcaacaggctcagatcgtggtcaccactacgcattttcttgtctttgtttttggtagttgtgtttggtgtagtttcatcgtccatacgactctgtgatttactttagtcggtcctcttcgtggaatggatgattaagttagacgtcgtgctattatcgtggtaagctagtttgattttgcagtagacatactgtacagagttttaattacgtttgaactgattccaaacttcgGACCCTTTCTAgagttttctccagcctgtctcttctcttagcccctcgctatttacgctccagcatgtgtcgccagcagcagactgagtccatcagcgatacaacgttggtaacattgatttaacgaagcttcgaggcagtcATTTTGCAATCGAATTAtttgaggaatcgtttcagccctaaacAATATACATGTGCCACTGGCCTCATTTTCTCAAAGTGTGTCACCAAGTCAAAAGTCTGAAGACTACTGAAAGTAGTTATTCCATAATCAGTAACCCACATCattatagcctagaaatctagatgcaccctagcggcagcaaattaaatttgcagccaggggtgtctaggcactctccgttgacttgcgagctggaaaaaccaaactctggtcatgccaatcacatcgtgtatagagtcggtgggcggggcttatggctgctgggaacagcggtcttctggaagacttggagttaagcttttctttgagaaaagaacggcactgaagtcattcttaaaaaaggaagatgcgTTCGGaattttgccgaccggatacggcaaaagtttaatctatcaactagcttcgctaccttcttcgttgctctgcctggttattgcgctatcctattgcgtgcagagggaatttgaaagacaaccgtttatcccgcccctcggattgagctccgtcaatggtgagttcccagacccaacatctggatgtgggtctggctcgtCAGGCTAACATCATTACAGTACCTTGTCATTCACAACTTTTTCAGTCAAGCCTGAGGCCACCATCTTCTGCAGCGTTTTCTCTTTGCTCTGTGCCTGTCGTGCCAGCTTTGCAGAGCCGTGACCAAACCTGGCAATGTAATTCTTCATGTGTGTTATCTGGTCCTGTTCCCAGTTGAAGCGCTTCATCTGGTTCTCTTCCAGCTCCTCTCTGGTCTTCACATACTGGTCATAGTTACCCGtgtagtatttcagttttctcTGATGCAGGTGGATGATGTTTGTGCACACACCATTCAGGAAGTCTTGAGAGTGTGAGATGAGCACAAGGATTCGCTTGAACGAACTGAGCTCCTCCTCCAACCACACACAAGCATCCAGATCCAAGTGGTTAGTGGGCTCATCCAGCAACAGCATGAAGGGTTTGATGAACAGGGCTCTGGACAAATGTAGGATAGTCATTAACATTCAATGAAGATGAAATGTAAACTTGCTTTCTGTATATGTAAACGGCTCTTAAaaggtcacttttttttcctcgtGTTTCTAAAGCTCATGGTTATCAGTTTTATATTACAATTCAGGAAGGACTACTCCTATTCCATGGGTGTTGCCTTTTATTAGCTTACAGTTTGACTTAGAAAAGGTCTTAATTTGACAGGAAAACATGAACTTTCTGAACTAGGTGAATTTGGTGCAAGCAGTTCTACCATAAGCAGATTAACTCAATTTAGCAACAAGTGGGTTATACACAATTTGAATTGGTAGTTAGACATACAGTACTCAAGAACAGAGCGTGTAAAAATTTAGGGTCATTTTATGTTACACGgtctgctttttatttattatttcggAAAAACATacctaaaaaataaaactagaaTCTTCACATGACAAGCAGTACTACTCAAGAGCACATATATGCATTGTAGCTCTGAATGTAGCATTTTACAAAAGCAACTAGATGGTTCAATTTCAAACCTATGCAGACACAGAATTGATGCAACACATCATGTCACTAAATGGTGTAATACTAAGCATTTTGTCTTAACCTGGCCAGAGCAACACGCATCCTCCATCCACCACTAAAGTCCTTCAGTTTCTTCTGCTGCATAGCAGCGGTGAAACCCAAACCGTGGAGGATCCGAGAGGCTCGCACCTCTGCCTTGTCTGCATCCAGCTCCTCCAGACGCTCGTACAGCTCCATCAGCTTCTCACACTCAGCTATGCAGGGGTGGGAGAAAGGAATTTATTATAATTTCAATCAATACAGCTACAGAACGACTAGACCGTTTTCCTTGTCTTTGCATCAAGTCAGCTTTACCCAAACtatggcgttttttttttgtcttgttttttttagagtCACACATCATGTAACTCACAGTCCTCATGCGCAAGTCTCTCTGCCTCCTTCTCCAGCATAATCCTCTGTTCATCCACCTCCATGACACACTGCAGAGCCGTCTTTTCGCTGGGGGCCATCTCCCGGGTTAAGTGGTAAATATCTATGTGCTCTGGAATGGGAATCTCACGATGCCCGATGGCTGACAACAGCATAGATTCCTGTGCCATTAAGGCCAATAAGACCATAGCGTCTGCCTGAGTTGAGCTCCAGGCTAGTGTCTGCTAGCAGCTCTTGACCATGGAAGGTGAGCGACAGGCTGCTAATGTGGACATCGGTGCTGTTGGGATGTGAGGCCAGAACGCCCGTCACTGCCCGTGCCTCCGTCTTAGCCAGTTCAAATTCATCCAGCTCTTTTGTCAAAAAGGCAACAcc

Function

symbol description
abcf2 Predicted to enable ATP binding activity. Located in membrane.

NR:

description
ATP-binding cassette sub-family F member 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299262 True 3304 lncRNA 0.42 5 19652354 19656460

Neighbor

gene id symbol gene type direction distance location
chpf2 chpf2 coding downstream 3553 19639856 ~ 19648801 (-)
asap1b asap1 coding downstream 66906 19518530 ~ 19585448 (-)
fam49bb fam49b,LOC104954579,LOC105915818,LOC103377397,LOC107085391 coding downstream 138317 19475880 ~ 19514037 (-)
ankha ankh coding downstream 321800 19315583 ~ 19330554 (-)
vps41 vps41 coding downstream 438702 19196583 ~ 19213652 (-)
si:ch73-173p19.1 LOC103363515,LOC104954586 coding upstream 2429 19658889 ~ 19666720 (-)
kif9 NA coding upstream 233222 19889682 ~ 19908076 (-)
cdv3 cdv3 coding upstream 293521 19949981 ~ 19954961 (-)
tmem108 LOC107589950 coding upstream 301824 19958284 ~ 19999250 (-)
topbp1 topbp1 coding upstream 345996 20002456 ~ 20018989 (-)
G221138 NA non-coding downstream 51415 19600706 ~ 19600939 (-)
G221095 LOC102309907,LOC101472733,LOC102788342,LOC101061645,LOC104929597 non-coding downstream 107962 19517372 ~ 19544392 (-)
G221090 NA non-coding downstream 206060 19446045 ~ 19446294 (-)
G221088 NA non-coding downstream 212815 19436966 ~ 19439539 (-)
G221086 NA non-coding downstream 277838 19372591 ~ 19374516 (-)
G221146 NA non-coding upstream 13244 19669704 ~ 19669954 (-)
G221149 NA non-coding upstream 22608 19679068 ~ 19730782 (-)
G221160 NA non-coding upstream 61988 19718448 ~ 19719622 (-)
LOC120551913 NA non-coding upstream 67639 19724099 ~ 19754508 (-)
G221150 NA non-coding upstream 93645 19750105 ~ 19751294 (-)
G221048 ankh other downstream 325460 19315591 ~ 19326894 (-)
mettl4 mettl4 other downstream 702859 18938913 ~ 18949495 (-)
LOC120552352 colec12,LOC102798044 other downstream 841410 18772977 ~ 18810944 (-)
G220833 NA other downstream 954384 18610236 ~ 18697970 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other downstream 1168578 18426762 ~ 18483776 (-)
LOC120552536 fbxl7 other upstream 1178718 20835178 ~ 20862688 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other upstream 1561220 21217680 ~ 21221667 (-)
tfr1b NA other upstream 2333557 21990017 ~ 22011086 (-)
LOC120552473 NA other upstream 2457922 22114382 ~ 22120611 (-)
smpx smpx other upstream 2546307 22202767 ~ 22218381 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G332874 NA non-coding NC_048568.1 CM023222.3 22514543 ~ 22514777 (-)
mexican tetra (Astyanax mexicanus) LOC111189882 NA misc NW_019172275.1 APWO02001873.1 104420 ~ 108369 (+)