G221183 (puf60)


Basic Information

Item Value
gene id G221183
gene name puf60
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 19814070 ~ 19818115 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU299312
cttgtgtttcattgtaacaGAATCCCAAGACATGTCTATGCTCTTGATTGGGCCGAAGGGGGCAAAGGCCTGTCTGATGGTGTCCTCACCAAGCTCATAGTATATGGAGCCCACATACACCCGACACATGATGGCTAGGGCACGTTGCCGCTGAGCTGCCACCGATTGTAAAGGTGAGAGAGGATCTCCAAAGCCCATTGTCACTGCTGCCATCTGCAGGTTGGTGAGCTGTTGTTGCTGATGGGCGATTGTCTGCTTCACCAACACACTCTTAATGCTTTGTTCCATGGCATACTTCTTTGCCCTCTGAAGTGCCTCCTGCTGCTCTGGGGTAAGAGGCGGCAGGCCAAGCTTGGAGCCTGTGCCCTGTCCATTCTCCATCGTCAGAGCTTCACCTCCCTGCAATTCAGAAACAGCAATTTATGAAAAAACAACTGAGAAAGAGTTGGGAGCATTAACACCTGCCTGTATGTACATACATAACTATATTttcccagtaaaaaaaaattaataattccAGCGTTGCACATCACCTCACACAGCACATGTTATTTAATATTCTAGCATACAGGACATACACCCGGATTTAAACCAGGTGGGACGGGACAAACTCCTTACCTACGCAACCCGCTAATCGCTGGGTCCACCAGACTGAGGCAGGAAAGCCCCCAAGGGGAAGAGGACTGATGGGGAAGCTTTAACAATTCAACAAATTCtagggaaaataaaaaatgccttCAGACTAACAATAAGAGAAACAGGcagctagggctgggtaccgaacttcgatacttttaggcaccgaccgaattgcttCCTTAGCATCGAGCCTCGAAAAGTGCCTCTTCATTCACTACTAAAATTTCactacctaaggagtaaatttCATCAGTGATAGTGAGctaataagcatgcagcatgtttataccaagatctaataatgctcgTCATTGGATGTCTAACATTACACCACGTAGACCATGCAGAAAAACACTGACAGAAGGGCTCATGTGTGGTGTTGTATTTTAAATAGGCATTAAGTCAGTGTGCGTCACATAGGTGTAAATGAGCtggaaaatgatttaaaaaaaaagatgtgtaacgtaatatgtaatttatttttgttaaaaatggatttcgaaaaaataaattaaaaaagtatcgttCAGGAACAGTTATCGAATTCccggtataaaaaaaaattatgtgaacgatacccagccctacaggTAGCTGGCATTATTTTTACATTGCAATCTTCAAGCCCGTCTTTCCTTAAATTTTAGTCAAAGAAAACATGTAGAATTCTGCAGGCTCGGCACCATTGATTTATGTGATGAGTAATACCTTTTCCTTCCTATAAGGTTCCTAGAATTGAGTTCGCCAACGTTAGCGTGATGCACATGCATGCTGATGACGGAGCTCATCTTAACATAAGCTAGCTACATTATTAAATAGATAGCAACAGAGGGCTAAAGTTAAACTTTAGGCGAACACGGGATTAGCTAAAGTCGACATGGACATTAACTACAACCGATCTGTACTACACCTAAATGATGAATTGCATAAGTATTACCAAAAAGCACTATGTGATGAGCGAGGCCTGGTTTCGATTTAGCTTAGCTACGTTATCTTTGTTGCTAGCAAGGAGCTAGCTGATGTTAGCTAGGCATAAATTACAATGGCGTTTGAAGCAAGCTCTATTTTCCCCAGTGAGATACATTGTCATTTCACAGGCTATCTCGTAAAAATAAATTCCACTAAACATCGCGAATTACTTACGCAACCGCCACTGTAGCTGGAAACGTTAATGTTTCTATTTATCAAGGGATTTATTTACCGCAGTCTCTGTTACCGCCATGAAGCACACCTTCTTGAAAAGGCCCAC

Function

symbol description
puf60 Enables identical protein binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome; mRNA splice site selection; and regulation of alternative mRNA splicing, via spliceosome. Located in cell junction and nucleoplasm.

NR:

description
PREDICTED: poly(U)-binding-splicing factor PUF60 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299312 True 1888 lncRNA 0.42 4 19814070 19818115

Neighbor

gene id symbol gene type direction distance location
si:ch73-173p19.1 LOC103363515,LOC104954586 coding downstream 147350 19658889 ~ 19666720 (-)
chpf2 chpf2 coding downstream 165269 19639856 ~ 19648801 (-)
asap1b asap1 coding downstream 228622 19518530 ~ 19585448 (-)
fam49bb fam49b,LOC104954579,LOC105915818,LOC103377397,LOC107085391 coding downstream 300033 19475880 ~ 19514037 (-)
ankha ankh coding downstream 483516 19315583 ~ 19330554 (-)
kif9 NA coding upstream 71567 19889682 ~ 19908076 (-)
cdv3 cdv3 coding upstream 131866 19949981 ~ 19954961 (-)
tmem108 LOC107589950 coding upstream 140169 19958284 ~ 19999250 (-)
topbp1 topbp1 coding upstream 184341 20002456 ~ 20018989 (-)
LOC120552713 dnajc13 coding upstream 202018 20020133 ~ 20055209 (-)
G221182 NA non-coding downstream 2935 19808752 ~ 19811135 (-)
LOC120551913 NA non-coding downstream 59562 19724099 ~ 19754508 (-)
G221150 NA non-coding downstream 62776 19750105 ~ 19751294 (-)
G221149 NA non-coding downstream 83288 19679068 ~ 19730782 (-)
G221160 NA non-coding downstream 94448 19718448 ~ 19719622 (-)
G221287 tmx3,LOC102777948 non-coding upstream 350566 20168681 ~ 20262155 (-)
G221293 pxdc1,LOC104939983 non-coding upstream 389623 20207738 ~ 20213258 (-)
G221359 NA non-coding upstream 651031 20469146 ~ 20469453 (-)
G221385 NA non-coding upstream 749444 20567559 ~ 20567784 (-)
G221400 NA non-coding upstream 868075 20686190 ~ 20758774 (-)
G221048 ankh other downstream 487176 19315591 ~ 19326894 (-)
mettl4 mettl4 other downstream 864575 18938913 ~ 18949495 (-)
LOC120552352 colec12,LOC102798044 other downstream 1003126 18772977 ~ 18810944 (-)
G220833 NA other downstream 1116100 18610236 ~ 18697970 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other downstream 1330294 18426762 ~ 18483776 (-)
LOC120552536 fbxl7 other upstream 1017063 20835178 ~ 20862688 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other upstream 1399565 21217680 ~ 21221667 (-)
tfr1b NA other upstream 2171902 21990017 ~ 22011086 (-)
LOC120552473 NA other upstream 2296267 22114382 ~ 22120611 (-)
smpx smpx other upstream 2384652 22202767 ~ 22218381 (-)

Expression


Co-expression Network