G221843 (ptchd1)


Basic Information

Item Value
gene id G221843
gene name ptchd1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 22300418 ~ 22301215 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU300160
GACGAAAGGGATGCCCAGGTACGTAGAGTTGTAGGTGGCCCCGGTCAGGTTGAGTATCCCAGCAGCAGTGAGGCCTGACAGTGTGACTGACAGCAACGCCAGCAGTCCCAACCAAGGTTTAGACCTCACACAGTCTCTCATAGAGCAGCAGAGGACGGCCAGCACACCACACGCCCCCAAGCTGGCTAACAGGGGGCGGTGTGCCAGCACCGAGGAAAACTGGAAGTCAGTTCTCAGAGAAGAGGAAGTAGAAGGGTACAGCCCCAGCTTAGGGTGCAACGCTGCAAAGTGCTGTAACTCGGCACAGAAGGCCTTTTCCCATTGGCTGGCCACCCGGTCCATCAGGCTGCCATGTGCTTGGAGGTAGTAGGTGAGCTGCAACGCCCTGGCAGAACGTACACCTTCTCCCCTGGCTCCGGTCCCCTGACCTCGCACCGCCCCGCTGGGACCCCAGCCCTGCACGCCGCCCAGCTGGTGGCCGATGTACGCCTGCCGTCCGTCTGCCAGCTGCGTGATTGGGTAGCGCAGAATTGGGACAGAGCGGTTGACGGTGCGAGCTGATTGGATCTCCTCCATGGCGCGGATGATGTCATCGATGATGCAGACGTTCTTGTCATCGGGGAGACAGAGGTAGGAGAAGGAGTAGTTGTAGCTGTTGACACCTGTGGCCGGGACCGTCACCTGCATCTGGTAGATCTGCTTGTGGAGCTGTGTacggagaaaacacacacatgcaaagttAACGTCCCAGTTTCCCAATTCAGCTGGAACAAACTGCGGCaagggcaacaaaaaaaa

Function

symbol description
ptchd1 Predicted to be involved in chemical synaptic transmission and cognition. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and synapse. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human PTCHD1 (patched domain containing 1).

NR:

description
PREDICTED: patched domain-containing protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300160 True 798 lncRNA 0.58 1 22300418 22301215

Neighbor

gene id symbol gene type direction distance location
LOC120551932 klhl34 coding downstream 100372 22195236 ~ 22200046 (-)
tnk2a LOC103363574 coding downstream 309071 21953645 ~ 21991347 (-)
tmtopsb LOC100702425,LOC101487167,LOC102300731,LOC104945569,LOC102206266,LOC103366381 coding downstream 382763 21876164 ~ 21917655 (-)
LOC120552274 NA coding downstream 580913 21716547 ~ 21719505 (-)
LOC120552272 thnsl1 coding downstream 588802 21706905 ~ 21711616 (-)
LOC120552124 NA coding upstream 378476 22679691 ~ 22688402 (-)
ggh ggh,LOC100704938,LOC108234706,LOC101480685 coding upstream 389815 22691030 ~ 22696864 (-)
LOC120552530 LOC103365300 coding upstream 395812 22697027 ~ 22801749 (-)
LOC120552328 epc1,LOC102784371,LOC100694393 coding upstream 539812 22841027 ~ 22888231 (-)
LOC120552717 LOC104965202,LOC103365305 coding upstream 611347 22912562 ~ 22921256 (-)
G221837 NA non-coding downstream 843 22243807 ~ 22299575 (-)
G221832 NA non-coding downstream 54365 22223889 ~ 22246053 (-)
G221793 NA non-coding downstream 208665 22091541 ~ 22091753 (-)
G221768 NA non-coding downstream 355728 21944370 ~ 21944690 (-)
G221712 LOC104936438,LOC103366385 non-coding downstream 467534 21832156 ~ 21832884 (-)
G221844 ptchd1 non-coding upstream 6273 22307488 ~ 22308234 (-)
LOC120552529 NA non-coding upstream 24058 22325273 ~ 22335484 (-)
G221857 NA non-coding upstream 35860 22337075 ~ 22339870 (-)
G221926 NA non-coding upstream 658151 22959366 ~ 22960660 (-)
G221928 NA non-coding upstream 680749 22981964 ~ 22982351 (-)
smpx smpx other downstream 82037 22202767 ~ 22218381 (-)
LOC120552473 NA other downstream 179807 22114382 ~ 22120611 (-)
tfr1b NA other downstream 289332 21990017 ~ 22011086 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other downstream 1078751 21217680 ~ 21221667 (-)
LOC120552536 fbxl7 other downstream 1437730 20835178 ~ 20862688 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other upstream 1100328 23401543 ~ 23519526 (-)
avl9 avl9 other upstream 2495374 24796589 ~ 24854888 (-)
msl2b msl2,LOC102304425,LOC102778660 other upstream 2662202 24963417 ~ 24968106 (-)
LOC120552232 LOC103371349 other upstream 2734669 25035884 ~ 25086902 (-)
LOC120552299 NA other upstream 3255258 25556473 ~ 25562540 (-)

Expression


Co-expression Network