G221844 (ptchd1)


Basic Information

Item Value
gene id G221844
gene name ptchd1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 22307488 ~ 22308234 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU300161
CTCACCTGCAGGAAGCCCATCAATCCAAAGGAGATGTAAACCAGATACAGCAGAACCACAAAGGGTTTGACGTAGGTGTTAGTGATCCAGTCTCCATAGCAACGCCTCACACACCCCAGCAAAAGGTGAGAGTCCTGAGGATTAGGTTCCGTGTTAGCTGTGGAATGTGGGAGTGGGAGTGGGAGTGGGTGTGGGAGTGGGTGCGGGTGCGGTGCGTGGAGTTAGCCACATGAACGTGTCCGTGCGCGGCAGTGTTGTTcggcgtgtgtgggtgtgtgtgtgcatgtgtgagagtTAGGTTAGAGTTTGGCGTTTGGGCGGGACTGTGATCGACCTCATGCGGTGGGTTGGTTGTTTGAGCCTCGTCCTGGTAGCGCGTGTACATGAGACACCTGTACCAGGCCGGTTTCGAGTCCAGCCGGTCCGGTTTGGGGACTCGCCGGCAGAAGCAGCCATGTCTGTACCCGGTCTCTAAGTATCCCGTGAAAACCAGACAGGAACTGTAGAAGGACAACATGTAAACGTAGCTGATGGCGACAGACAGCGTGGCAGTGCGGCAGAAAAGCCGGACAGCCTCCATGTTGGTGAGCGGCGAGGCGGCCAGGCCCAGGGTCATCAGGTGGAGCATGGTGGAGCCGGAGAAACGCAACATGACGTCCTCGAAGACGCTCGCCACGCGCTCCTTCACATGCTGGTCCTCCCGGGTTCGCCTCCATGACGACAGCATCTCAAAGGAGCCGAAGAGCC

Function

symbol description
ptchd1 Predicted to be involved in chemical synaptic transmission and cognition. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and synapse. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human PTCHD1 (patched domain containing 1).

NR:

description
PREDICTED: patched domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300161 True 747 lncRNA 0.58 1 22307488 22308234

Neighbor

gene id symbol gene type direction distance location
LOC120551932 klhl34 coding downstream 107442 22195236 ~ 22200046 (-)
tnk2a LOC103363574 coding downstream 316141 21953645 ~ 21991347 (-)
tmtopsb LOC100702425,LOC101487167,LOC102300731,LOC104945569,LOC102206266,LOC103366381 coding downstream 389833 21876164 ~ 21917655 (-)
LOC120552274 NA coding downstream 587983 21716547 ~ 21719505 (-)
LOC120552272 thnsl1 coding downstream 595872 21706905 ~ 21711616 (-)
LOC120552124 NA coding upstream 371457 22679691 ~ 22688402 (-)
ggh ggh,LOC100704938,LOC108234706,LOC101480685 coding upstream 382796 22691030 ~ 22696864 (-)
LOC120552530 LOC103365300 coding upstream 388793 22697027 ~ 22801749 (-)
LOC120552328 epc1,LOC102784371,LOC100694393 coding upstream 532793 22841027 ~ 22888231 (-)
LOC120552717 LOC104965202,LOC103365305 coding upstream 604328 22912562 ~ 22921256 (-)
G221843 ptchd1 non-coding downstream 6273 22300418 ~ 22301215 (-)
G221837 NA non-coding downstream 7913 22243807 ~ 22299575 (-)
G221832 NA non-coding downstream 61435 22223889 ~ 22246053 (-)
G221793 NA non-coding downstream 215735 22091541 ~ 22091753 (-)
G221768 NA non-coding downstream 362798 21944370 ~ 21944690 (-)
LOC120552529 NA non-coding upstream 17039 22325273 ~ 22335484 (-)
G221857 NA non-coding upstream 28841 22337075 ~ 22339870 (-)
G221926 NA non-coding upstream 651132 22959366 ~ 22960660 (-)
G221928 NA non-coding upstream 673730 22981964 ~ 22982351 (-)
G221933 NA non-coding upstream 731615 23039849 ~ 23040134 (-)
smpx smpx other downstream 89107 22202767 ~ 22218381 (-)
LOC120552473 NA other downstream 186877 22114382 ~ 22120611 (-)
tfr1b NA other downstream 296402 21990017 ~ 22011086 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other downstream 1085821 21217680 ~ 21221667 (-)
LOC120552536 fbxl7 other downstream 1444800 20835178 ~ 20862688 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other upstream 1093309 23401543 ~ 23519526 (-)
avl9 avl9 other upstream 2488355 24796589 ~ 24854888 (-)
msl2b msl2,LOC102304425,LOC102778660 other upstream 2655183 24963417 ~ 24968106 (-)
LOC120552232 LOC103371349 other upstream 2727650 25035884 ~ 25086902 (-)
LOC120552299 NA other upstream 3248239 25556473 ~ 25562540 (-)

Expression


Co-expression Network