G222041 (LOC104961439,LOC108234716,LOC107988374,LOC107089423)


Basic Information

Item Value
gene id G222041
gene name LOC104961439,LOC108234716,LOC107988374,LOC107089423
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 24189134 ~ 24192800 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU300393
ctgatttttaaagatatttaatCGTGTCATATAAATATTCAGTACAAAATATCACGTTTTACAAAGCAGATTGATGAATAGCCAACGATGTAGGGCCCTCTTAACACTACCACGACCTCTCAAGTTGTTTCTACATTAACAAAACTCCACAGCTCAATCACATTGTCACCAAGATAATATACCGCAGTAGAGGTTGAGCCCCGGGGCCCACCGTGTCTACACATCAACAACCACAGGATCTACTGTATCTGGAGACAGAGGACATCAGCGTCACCATCTAGTTgcctcaaataaaaaaataaaaaccagaaGTGCCGGGGCTTTTTACGATGTGCAACATTTTTCTGTTATCTTAGCTGAGCATGGCGCCAATGCTTGGAGGCAATTATACTCTCCATAGGAAAACACAAGCACGTCTTCGTAATGGCGATATGCTGACACCCTGTATGAAGACAGAAAATAGTGAAGActgaagggagaaagaaaaataaatttgctgaGTGCTGCTGTCATGTTGATTTCCATTTGAGACCTCGCATTGGACCTTGAGGCAGAAAAGCAGCTTTGTTAGAGTGAAGGGTTTTTCAAACCCATTAATAGGTAATCATAGAAAACGTTGCTGCAGTCTGGAAATGGCCACTTAGTCTATGGGAGCACTAGCAAAGAGCTAATAAACCAAACAAGGGGGCGAAGAAAAACGAAAAAGAACACATGTATACAATAGCGGAGCGTTCAGAATCTTCCGACCGCTGTGTTTTCAATTGGATTGTTTAATGCACTGCGCCGATGTCGAGCCCGATTTCGGAGTACGCAGAGAATAAGTGTACCGCTGTGGCAATTACGCAATTGTGTTTTGATATTATGGTTTCAAATGTCTGATGAATGGCAGCCTCTTCACAGGTTGGCCTTTTGCTAAAGTGAGGGCAGAGCTTGTTTTGGctggcctcttttttttttttttttttctctctatcaTTCTGCCCTCCCAGTTCCCAGCCTTCGTTATTTcaagacaattttttttttcattgttaggGGGTCTTGAAGTAATTTGATgatattgcttttctttcttttgttttctaaatCGCTTTAAAAACTAAACCGTTGCTTGTTGTTGCCGCAGGACGTTTCGACCTCATCTCGGAGACGATGAAACACCTCTGGGTTTGTGCGCCTTATTCCGCACCAGTCAAAGGTCAGGcgcccccctttttttttttttttttatggaaaagGCTGTTCGTCCCGCTGGGAAatcagttaggtgaacacttgGACTGGCTTCATGTTCAACCCTACATACGGTACATGTAATGAAAGAGACTGAACAGTGTACAGAAATTAGAAGaatttttaaaaggaaaatacTGGTGTTCTTTGCTTTTTGGCACATTTCCAAAAACTGCTATGTTACATTATTATACATTCGACTGTGCAGGACCGAGCCCATCTCAGGACACGAAATGTTGATCAAACAAGTGTAAGAAAatcattttatatttctttattgAATGCTGTAGGTCACATTTTAGATggttctttctcttcttttgaaAAGAATCTGACCCCCAAATTTAAGAAAATCTAGACTCCAGGcgagaagatttttttttttttaatttaaggcaACTCTTTTGACTCATATTATAGACTTTGATGCTTATGTAAAAGCATAAAAGCTTTACAGATGGACCGAGTCCAAGTTTAAATGCGCATGTATAATTGTTCTAATTCCAGTCGACTTGGTACGTTGATTCAAATGTTACTTTTCCCTGTTGAAAATAAATTTGCATGATTAATTTTAATGCTAACCGTCCACGAGATGTTTAATCTAATGCCGTAGTTTCAAGCTCCAGTTAATGTGACTTAACACCATGCTGTACAGAGTGAaacatttacacatttccacGGTCGatatgagcaaaaaaaaataaaaataaagtccaACAAGACCAGTATTTTCCTCTGAGGATGGTGCACATTAGATTGGTAAATTTTTATCAACGTATCTTAGAAAATAACACTTATTTTGTGTACTTCATTTTTCAGCCAGTTGGctgcacagagaaaaaaaatggttcTGAAGACATTCAGCTCAACAAGGGAAATATTTGGTATTTGGCTCACCTCACACACAATGATCCAAGCTGTGTGGAGATGGAAATCCGATACTGCAAAAATAACATAACTAGTGTTTTTGCAGATGTTGGTTGTGGCTGTGAATTCCACGCAAGCTTTAAACGGCTTTTGTAACCTTTAAAGAACAATTAGCCACTCGTCGACCGAACACAAATTCGATTACGCAATCCCAACCCAACTTGTATCGAGATTTCTCATTTTTCTCATCAAGAGATGAGGATGCCAAAATGTTCTGGCTCGAGCAAAACTGTGGATAACGTGAGGCAGCCGTCGCTGAAAGAGGGGATCGTTTGGAATAAAAAATCCCTAGAAAACAAAACGACTGTACAGCGTATTGTATCATATTACCGTACGTACACAAGCTAAGATAGAACTCACAATATGCAGCATGTTTTTGTCCgagaaacactgaaaaataCATAGGCATATCTGTTGATTTTACAAAACTGCTTGTTGAACATGTCCATCAAACGCAGctttggagaagaaaaaaagaagaaaaaaaaaaaaaacggtatatTTGGGCCtcatgtatatacacacacacacaaaagtcttGACACAAAGTCTCTTTTCACTGCAccctggcaaaaaaaaaaaacgcaactAACACTGACTTGACACACAAAGCCTACGTCCGGTCACCGGAGGGACGACTGAATGGTGCGCGGTAGCGGTGAAAGAGCACTTGGACAAATGGTGCTCGTTTCTCGGTCCTTTTCGCCATTTTTCTCGCTACACGTGCGGCAAAAAATTGCACCAAAGTTTCACGCGCGTTTTGGATTTCCGCGCTTTTTCTCTCCTCGTGCCAGGCTCTCGTTAGGAATCCCTGTCGCTGTCGTCGTCGTCGCCCCCGTACATGTCCGCCAGTTTCTTAAACCGGGGTCCCCACTCGCTCAGGTAGTTGTAGTCCTGGTCGCCCTCTGTGGTCACCGAGTCGAGTGAGCTGAGGGACTCCGCCACGGAGCCGTTGCCCTCGTAGGCGTAGGTGGCCAGGGAGTCGTAAGGCGGCGCCGTCGGGTCGCTGTCGTTGTCCTGGAGCCTCTGGTTGATGAAGTCTCTCACGTCCCCGTTGGTGTCCCGGATCGGGGGCAGCACGGGCCGTCGCACCGCAGGGTAGAAGGTCTCGGGGACGATGTCCCTCCGCTGCTTGCTCTCCTCGATGGCCTCCGGGTTGCGCAGCGTGCCGATATCAAAGGCCTGAGTGTCCTCCTCTCCGCCCCCTTCGTCGTTGTAGCTGACGACGTTGTCTCGGACGTCCTCTTTGGAGATGATCAGAGGCTccttcttcctctgtctcctcagGGCAGCGAACAGCACCACGATCACTGCGGGGAACCACAACAGAGAGAACGAGTTACAGACTTTGGTGACTTTTTGCCGTTGTTTCTTTGCTCCCTCTCTTTGTTCTGAAGGCCAGTGACCGTCCAGGGGGAATTCGTGATGTTGCATGAGTGTTCACTGATGTTCAGGGACTTTGTCTGACTTTGTAGAAACAGACTCAGCTACCACAAGTATGCATTAT

Function

NR:

description
PREDICTED: cadherin-6-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300393 True 3667 lncRNA 0.43 1 24189134 24192800

Neighbor

gene id symbol gene type direction distance location
cdh10a LOC102783614,LOC100705471,LOC101477094,LOC102310056,LOC102199257 coding downstream 522277 23633683 ~ 23666857 (-)
LOC120552656 cdh18,LOC102310872 coding downstream 881099 23128644 ~ 23308035 (-)
LOC120552718 NA coding downstream 1118237 23068720 ~ 23070897 (-)
LOC120552717 LOC104965202,LOC103365305 coding downstream 1267878 22912562 ~ 22921256 (-)
LOC120552328 epc1,LOC102784371,LOC100694393 coding downstream 1300903 22841027 ~ 22888231 (-)
drosha drosha coding upstream 578 24193378 ~ 24297851 (-)
mc4r LOC104930272,LOC103365861,LOC104961440 coding upstream 164809 24357609 ~ 24361216 (-)
rnf152 rnf152 coding upstream 467311 24660111 ~ 24723840 (-)
LOC120552289 NA coding upstream 571861 24764661 ~ 24770211 (-)
LOC120552302 NA coding upstream 579106 24771906 ~ 24777805 (-)
G222039 NA non-coding downstream 11147 24177740 ~ 24177987 (-)
G222038 LOC104961439,LOC107383085 non-coding downstream 20585 24168312 ~ 24168549 (-)
G222037 LOC105920180,LOC107100491,LOC106522295,LOC107383085 non-coding downstream 36372 24152479 ~ 24152762 (-)
G222012 NA non-coding downstream 365456 23823353 ~ 23823678 (-)
G222001 NA non-coding downstream 497172 23691413 ~ 23691962 (-)
G222062 cdh20,LOC103456703,LOC102782851 non-coding upstream 416661 24609461 ~ 24609679 (-)
G222088 NA non-coding upstream 602066 24794866 ~ 24795350 (-)
LOC120552180 NA non-coding upstream 701772 24894572 ~ 24904700 (-)
LOC120552179 NA non-coding upstream 735524 24928324 ~ 24954497 (-)
G223155 NA non-coding upstream 803826 24996626 ~ 25023914 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other downstream 669608 23401543 ~ 23519526 (-)
smpx smpx other downstream 1970753 22202767 ~ 22218381 (-)
LOC120552473 NA other downstream 2068523 22114382 ~ 22120611 (-)
tfr1b NA other downstream 2178048 21990017 ~ 22011086 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other downstream 2967467 21217680 ~ 21221667 (-)
avl9 avl9 other upstream 603789 24796589 ~ 24854888 (-)
msl2b msl2,LOC102304425,LOC102778660 other upstream 770617 24963417 ~ 24968106 (-)
LOC120552232 LOC103371349 other upstream 843084 25035884 ~ 25086902 (-)
LOC120552299 NA other upstream 1363673 25556473 ~ 25562540 (-)
LOC120552722 NA other upstream 1529690 25722490 ~ 25738940 (-)

Expression


Co-expression Network