G222088


Basic Information

Item Value
gene id G222088
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 24794866 ~ 24795350 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU300456
gttttttaataaattaacgttcattcaaaatacagtgCCAAAGGAATATGATGCAGCCAAACATGCTAGTAAGGTTTGTCATGAAGCACCTGTGCTCATGTTTTTAAAGGTAGGAGGAagaacacccacccaccccccatCCTCCTCCCCAACCCGCCCTCTCTACTACTGCTAGTGGTTGCCGGGACAATTTCCATAGCAACAGCCGTGGGCCAGCCCTCTCTTCTCACAACCATTCAGCAGCAAGAATCCTCAATATTCACTCGAGAAAAATGTAATCTTGATAGGAAAATGGATATCTACCCACAATCACACTACAGTAATGTttgatattaaataaaaaaaaaaaagacctggtTATTTTCCCCCACACTAAAACAGTTGTCTTttaaacatatacacatatatatacatacacacatacacacatatatacatatatatatacacatatatatatatacacatatatatacatacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300456 True 485 lncRNA 0.37 1 24794866 24795350

Neighbor

gene id symbol gene type direction distance location
LOC120552302 NA coding downstream 17061 24771906 ~ 24777805 (-)
LOC120552289 NA coding downstream 24655 24764661 ~ 24770211 (-)
rnf152 rnf152 coding downstream 71026 24660111 ~ 24723840 (-)
mc4r LOC104930272,LOC103365861,LOC104961440 coding downstream 433650 24357609 ~ 24361216 (-)
drosha drosha coding downstream 497015 24193378 ~ 24297851 (-)
psme2 psme2 coding upstream 67160 24862510 ~ 24869834 (-)
emc9 emc9 coding upstream 123022 24918372 ~ 24923172 (-)
LOC120552233 LOC100707500,LOC102204569,LOC102296665,LOC101471184 coding upstream 297227 25092577 ~ 25179568 (-)
LOC120552454 NA coding upstream 386862 25182212 ~ 25197533 (-)
LOC120551896 LOC101467476,LOC100708037,LOC105920600,LOC101173583 coding upstream 403712 25199062 ~ 25229544 (-)
G222062 cdh20,LOC103456703,LOC102782851 non-coding downstream 185187 24609461 ~ 24609679 (-)
G222041 LOC104961439,LOC108234716,LOC107988374,LOC107089423 non-coding downstream 602066 24189134 ~ 24192800 (-)
G222039 NA non-coding downstream 616879 24177740 ~ 24177987 (-)
G222038 LOC104961439,LOC107383085 non-coding downstream 626317 24168312 ~ 24168549 (-)
G222037 LOC105920180,LOC107100491,LOC106522295,LOC107383085 non-coding downstream 642104 24152479 ~ 24152762 (-)
LOC120552180 NA non-coding upstream 99222 24894572 ~ 24904700 (-)
LOC120552179 NA non-coding upstream 132974 24928324 ~ 24954497 (-)
G223155 NA non-coding upstream 201276 24996626 ~ 25023914 (-)
G223181 NA non-coding upstream 212139 25007489 ~ 25011818 (-)
G223184 NA non-coding upstream 238726 25034076 ~ 25034364 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other downstream 1275340 23401543 ~ 23519526 (-)
smpx smpx other downstream 2576485 22202767 ~ 22218381 (-)
LOC120552473 NA other downstream 2674255 22114382 ~ 22120611 (-)
tfr1b NA other downstream 2783780 21990017 ~ 22011086 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other downstream 3573199 21217680 ~ 21221667 (-)
avl9 avl9 other upstream 1239 24796589 ~ 24854888 (-)
msl2b msl2,LOC102304425,LOC102778660 other upstream 168067 24963417 ~ 24968106 (-)
LOC120552232 LOC103371349 other upstream 240534 25035884 ~ 25086902 (-)
LOC120552299 NA other upstream 761123 25556473 ~ 25562540 (-)
LOC120552722 NA other upstream 927140 25722490 ~ 25738940 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G938121 NA non-coding NC_048575.1 CM023229.2 6109754 ~ 6110586 (-)