LOC120552443


Basic Information

Item Value
gene id LOC120552443
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25347574 ~ 25393038 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU302093
CTCATACCATCCACATTTAGGTTGATAAATAACTCCTGGTTGCCAGTGGTGGTGCCGGTGTAGCACTTGTATCTTCCCTGGTCCTGAACCTCCACCCCTGTCAACCGGAGCGAGGCGTTTCCTCTGGAGATCTGGTCCTGGAACAGCGACGTCCTGCCTCTGAAGCGCTGGTCCTGGAGTCCTAGTTGGTTCTTGTTGTGATAGTAGGTATGAGCCAGAAGgtcttttgttttcctctgATGCCAGTGGATGACTGCTTCATCACCAGGCGGAAAACTGCACGGTAAGATGCAGCTCTCCATGAAAACACAGGAG
>XR_005638005.1
AGGAAAGTTTATCATGCTCAGACCAGTGAAACTCAACAGCTGGTTGTATTTCCTCACATTGGTTGCTGTGAACAACTTTCATGTAAAAATGTTCACTAGGTAACACAAACTAAACTCAGTTCATGTCTTTTTGATTCAGATGATAATATCTTAAAACAATGGCACACAACACAAAAGATTAAATCCATTTTCATGTATTATGTTTCCTGTTTAGCTTCCTTTCTCTGGTGAAAGTAACCATGACGACGCTGACTAACATCTGGTATCTCTGGGCTGTGAACTCTTCACTCACCTCCTCTTGCAGGACTCAGAAAGgttccAGTAAGGAGAAGCCATGCAGAAAAGACTATTATTCCCGGAGATACTGGAAGATAAAAAGTTTGTGTTCACTTGAACGCAGCAGATCCAGGTGAAATGTAATCCTTCAGCTGTCTTGGGCTCCGTCTGTTTCCGCTGCTTGTCCAACAATATCATCAATAGACGAGTTCCAGACATTATCAGTAAGGGGTAGAAGACTAAAACAGATTGACTGAGAGCTTATGAGGAAG
>XR_005638006.1
AGGAAAGTTTATCATGCTCAGACCAGTGAAACTCAACAGCTGGTTGTATTTCCTCACATTGGTTGCTGTGAACAACTTTCATGTAAAAATGTTCACTAGGTAACACAAACTAAACTCAGTTCATGTCTTTTTGATTCAGATGATAATATCTTAAAACAATGGCACACAACACAAAAGATTAAATCCATTTTCATGTATTATGTTTCCTGTTTAGCTTCCTTTCTCTGGTGAAAGTAACCATGACGACGCTGACTAACATCTGGTATCTCTGGGCTGTGAACTCTTCACTCACCTCCTCTTGCAGGACTCAGAAAGgttccAGTAAGGAGAAGCCATGCAGAAAAGACTATTATTCCCGGAGATACTGGAAGATAAAAAGTTTGTGTTCACTTGAACGCAGCAGATCCAGGTGAAATGTAATCCTTCAGCTGTCTTGGGCTCCGTCTGTTTCCGCTGCTTGTCCAGTTGATAAATAACTCCTGGTTGCCAGTGGTGGTGCCGGTGTAGCACTTGTATCTTCCCTGGTCCTGAACCTCCACCCCTGTC
>XR_005638007.1
AGAGACAGTTTAGTGCAGAGCATCACAGTTTGGGTGCAAAGTGTCCTTCATCAGCTATCAGATGTGTGTCTAAAACAGACTCAAAGgttccAGTAAGGAGAAGCCATGCAGAAAAGACTATTATTCCCGGAGATACTGGAAGATAAAAAGTTTGTGTTCACTTGAACGCAGCAGATCCAGGTGAAATGTAATCCTTCAGCTGTCTTGGGCTCCGTCTGTTTCCGCTGCTTGTCCAACAATATCATCAATAGACGAGTTCCAGACATTATCAGTAAGGGGTAGAAGACTAAAACAGATTGACTGAGAGCTTATGAGGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302093 False 315 lncRNA 0.52 2 25347574 25393038
XR_005638005.1 True 548 lncRNA 0.40 3 25351886 25356970
XR_005638006.1 False 546 lncRNA 0.42 3 25347787 25356970
XR_005638007.1 False 319 lncRNA 0.43 3 25351886 25352754

Neighbor

gene id symbol gene type direction distance location
LOC120551896 LOC101467476,LOC100708037,LOC105920600,LOC101173583 coding downstream 118030 25199062 ~ 25229544 (-)
LOC120552454 NA coding downstream 150041 25182212 ~ 25197533 (-)
LOC120552233 LOC100707500,LOC102204569,LOC102296665,LOC101471184 coding downstream 168006 25092577 ~ 25179568 (-)
emc9 emc9 coding downstream 424402 24918372 ~ 24923172 (-)
psme2 psme2 coding downstream 477740 24862510 ~ 24869834 (-)
LOC120552403 NA coding upstream 21846 25414884 ~ 25427197 (-)
chrnd chrnd coding upstream 36200 25429238 ~ 25437142 (-)
cip2a kiaa1524 coding upstream 46116 25439154 ~ 25461021 (-)
si:ch73-264p11.1 NA coding upstream 73295 25466333 ~ 25488648 (-)
zgc:112982 NA coding upstream 112101 25505139 ~ 25527126 (-)
LOC120552441 NA non-coding downstream 1622 25339252 ~ 25345952 (-)
G223202 NA non-coding downstream 14184 25257666 ~ 25333390 (-)
LOC120552444 NA non-coding downstream 33772 25309259 ~ 25313802 (-)
LOC120552440 NA non-coding downstream 47167 25295459 ~ 25300407 (-)
G223193 NA non-coding downstream 148544 25198346 ~ 25199030 (-)
G223252 NA non-coding upstream 78682 25471720 ~ 25541442 (-)
G223265 NA non-coding upstream 185261 25578299 ~ 25582204 (-)
G223269 NA non-coding upstream 211232 25604270 ~ 25604783 (-)
G223270 NA non-coding upstream 243416 25636454 ~ 25637238 (-)
G223239 sat1,LOC102777910 non-coding upstream 265551 25658589 ~ 25721181 (-)
LOC120552232 LOC103371349 other downstream 260672 25035884 ~ 25086902 (-)
msl2b msl2,LOC102304425,LOC102778660 other downstream 379468 24963417 ~ 24968106 (-)
avl9 avl9 other downstream 492686 24796589 ~ 24854888 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other downstream 1828048 23401543 ~ 23519526 (-)
smpx smpx other downstream 3129193 22202767 ~ 22218381 (-)
LOC120552299 NA other upstream 163435 25556473 ~ 25562540 (-)
LOC120552722 NA other upstream 329452 25722490 ~ 25738940 (-)
mynn mynn other upstream 424391 25817429 ~ 25834224 (-)
G223328 NA other upstream 588422 25981460 ~ 26042864 (-)
G223331 LOC101483661,LOC101069443,LOC103355338,LOC108249550 other upstream 590556 25983594 ~ 25997932 (-)

Expression


Co-expression Network