G223277


Basic Information

Item Value
gene id G223277
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25700797 ~ 25770143 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU302179
cttcACTctattggatagacctacaaccaatcagagaaacggatagacctacaaccaatcagagcatcggatagacctacaaccaatcagagcatcggATAGACctacaaccaatcagagcaacagatagacctacaaccaatcagagcaacgactgacgtcacagaagctgcaagtcaaaggcaggcttcgatagagcaaaggcagaggcggcagtttcctttgttgtaaacaaatgcaACCcgagcgctctttggtgacgtggctgattacgttactgttgctcatctgtccatcatcgtataaagcccgcccccTGACCAtctgattggtccaaacagctctggttgGAGCATAGTCGCTCCACagcggatcaagtccagaccaaacttccccgacctcaaatgttgtgggcggggctaagttcggctggcattcAGGCTATAactgtgttaaataatcgtgatttcaacaTTGACCAAAAacaattgtgattatgatttttttttttttcgtaagCGAGCAGCCCTAACAACCAGCTCACGACTCTGCTGCTGGGACAGTGAAGGGAAGTGCTCCTTCTAACCTCCAAGCCACGGTCCATCCCTGCAGTCCTCCGCCTCTGGGTGATTGgcgtttatcggtgttttaagcccgccccaacgtctccttccaggcagcgctgcctggaaggcactaggatcaggcaatggttatggttagggttaggtgcctggAAGTCAACGctcacagcgctgcctggaaggagacgttgggggcttaaagcACCATCGAGCGTGATTGGCCCAGAGATTTGTACTGTTAGTCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302179 True 830 lncRNA 0.50 3 25700797 25770143

Neighbor

gene id symbol gene type direction distance location
pdha1b pdha1,LOC104960622 coding downstream 17527 25669233 ~ 25683270 (-)
rps6ka3b rps6ka3,LOC107081812 coding downstream 40066 25591480 ~ 25660731 (-)
eif1axb eif1ax,LOC101173816,LOC102222479,LOC107081821 coding downstream 126832 25563886 ~ 25573965 (-)
map7d2b NA coding downstream 154693 25528232 ~ 25546104 (-)
zgc:112982 NA coding downstream 173671 25505139 ~ 25527126 (-)
lrrc34 NA coding upstream 27142 25797285 ~ 25812783 (-)
cldn11b cldn11,LOC104933881,LOC104940783 coding upstream 330745 26100888 ~ 26110027 (-)
si:ch211-230g15.5 LOC103369797,LOC102301809,LOC102203330,LOC100701790 coding upstream 340264 26110407 ~ 26148023 (-)
rmc1 clg3h18orf8,LOC104932202,LOC103368274,LOC101473408,LOC102288614,LOC103129440 coding upstream 553350 26323493 ~ 26345733 (-)
riok3 riok3 coding upstream 582488 26352631 ~ 26375762 (-)
G223270 NA non-coding downstream 63559 25636454 ~ 25637238 (-)
G223269 NA non-coding downstream 96014 25604270 ~ 25604783 (-)
G223265 NA non-coding downstream 118593 25578299 ~ 25582204 (-)
G223252 NA non-coding downstream 159355 25471720 ~ 25541442 (-)
LOC120552442 NA non-coding downstream 312648 25382543 ~ 25388149 (-)
G223301 NA non-coding upstream 29578 25799721 ~ 25800693 (-)
G223303 NA non-coding upstream 38621 25808764 ~ 25896644 (-)
G223305 NA non-coding upstream 54219 25824362 ~ 25826846 (-)
G223314 NA non-coding upstream 145114 25915257 ~ 25915749 (-)
G223318 NA non-coding upstream 158496 25928639 ~ 25930103 (-)
LOC120552299 NA other downstream 138257 25556473 ~ 25562540 (-)
LOC120552232 LOC103371349 other downstream 613895 25035884 ~ 25086902 (-)
msl2b msl2,LOC102304425,LOC102778660 other downstream 732691 24963417 ~ 24968106 (-)
avl9 avl9 other downstream 845909 24796589 ~ 24854888 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other downstream 2181271 23401543 ~ 23519526 (-)
mynn mynn other upstream 47286 25817429 ~ 25834224 (-)
G223328 NA other upstream 211317 25981460 ~ 26042864 (-)
G223331 LOC101483661,LOC101069443,LOC103355338,LOC108249550 other upstream 213451 25983594 ~ 25997932 (-)
G223351 NA other upstream 284376 26054519 ~ 26059062 (-)
G223350 NA other upstream 289854 26059997 ~ 26130122 (-)

Expression


Co-expression Network