G223395 (cul1,LOC107713664)


Basic Information

Item Value
gene id G223395
gene name cul1,LOC107713664
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 26216885 ~ 26218324 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU302346
aaaagacacATCAGGCTCACACACACGTTGGTTTTGTCGACAATACGAAATATCACCAGACGTTAAAATCTTAAGCTTCAAATAATCATGTGTCATTAAGTTGAaacatacaattaaaaaaatgagggaattactgtaagagtgtgtatgtctgtctgtgcatgtctgtgtgtgtctgtctgtctgtgtgtgcttgcctgtctgtgtgtgtctgtctgtctgcatgtgtgcgtacctgtctgtgtgtgtgtctgtctgtctgtctgtctgtgtgtgttttaccttGATGACGGGGACTCTGGGTTTGAATCGGGACGACAGCTGGTTCAGGACTTCGGCCAGAAGCTGCTGGTGCTTCAGGACCTTCCTCATCTTCATGATCCTCACTATGGCAgcCTGAATGAGGAGCTTTCGATCCTCCTCGATGTTCTTGTGAGTCGTCTCCTGCTCCTGTTTCTGCTCCGTCTTCATCGGGACGTTGATGTTCACCCTCAGTTTCTTATTCTTGTATCCGAGGAAAAGCTTGATGACGGTGTCAGGTTTGAACTCCACCTCGTCCACGTTGGCGTTCTCGTC

Function

symbol description
cul1 Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and protein ubiquitination. Located in plasma membrane. Part of Parkin-FBXW7-Cul1 ubiquitin ligase complex and SCF ubiquitin ligase complex.

NR:

description
PREDICTED: cullin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302346 True 576 TUCP 0.47 3 26216885 26218324

Neighbor

gene id symbol gene type direction distance location
si:ch211-230g15.5 LOC103369797,LOC102301809,LOC102203330,LOC100701790 coding downstream 68862 26110407 ~ 26148023 (-)
cldn11b cldn11,LOC104933881,LOC104940783 coding downstream 106858 26100888 ~ 26110027 (-)
lrrc34 NA coding downstream 404102 25797285 ~ 25812783 (-)
klhl15 klhl15 coding downstream 451573 25742577 ~ 25765312 (-)
acot9.1 acot9 coding downstream 510242 25684062 ~ 25706643 (-)
rmc1 clg3h18orf8,LOC104932202,LOC103368274,LOC101473408,LOC102288614,LOC103129440 coding upstream 105169 26323493 ~ 26345733 (-)
riok3 riok3 coding upstream 134307 26352631 ~ 26375762 (-)
trnai-aau_30 NA coding upstream 229362 26447686 ~ 26447759 (-)
trnai-aau_31 NA coding upstream 231519 26449843 ~ 26449916 (-)
trnai-aau_32 NA coding upstream 248113 26466437 ~ 26466510 (-)
G223371 NA non-coding downstream 109898 26106712 ~ 26106987 (-)
G223348 NA non-coding downstream 130205 26026105 ~ 26086680 (-)
G223363 rpl22l1 non-coding downstream 142943 26071089 ~ 26073942 (-)
G223354 NA non-coding downstream 181084 26035415 ~ 26035801 (-)
G223347 NA non-coding downstream 193390 26022960 ~ 26023495 (-)
G223449 NA non-coding upstream 214985 26433309 ~ 26494229 (-)
G223455 NA non-coding upstream 243002 26461326 ~ 26463045 (-)
G223436 NA non-coding upstream 250098 26468422 ~ 26470795 (-)
G223464 NA non-coding upstream 336529 26554853 ~ 26558519 (-)
G223471 NA non-coding upstream 374717 26593041 ~ 26658273 (-)
G223350 NA other downstream 86763 26059997 ~ 26130122 (-)
G223351 NA other downstream 157823 26054519 ~ 26059062 (-)
G223328 NA other downstream 174021 25981460 ~ 26042864 (-)
G223331 LOC101483661,LOC101069443,LOC103355338,LOC108249550 other downstream 218953 25983594 ~ 25997932 (-)
mynn mynn other downstream 382661 25817429 ~ 25834224 (-)
G223433 NA other upstream 185677 26404001 ~ 26409357 (-)
G223435 NA other upstream 253380 26471704 ~ 26475911 (-)
LOC120552560 NA other upstream 265605 26483929 ~ 26510127 (-)
LOC120552733 LOC100703031,LOC102297688,LOC106527684,LOC106916028,LOC104953541,LOC106590371,LOC101467375 other upstream 341111 26559435 ~ 26906332 (-)
G223516 LOC107098890,LOC106903449,LOC105416179,LOC103369801,LOC107756860,LOC108228419 other upstream 886274 27104598 ~ 27188218 (-)

Expression


Co-expression Network