LOC120552561


Basic Information

Item Value
gene id LOC120552561
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 26917333 ~ 26929021 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU302517
CAGCCTCCGACTCCCGGCTGCAGATGAGGAGAAACCGTTTTCTACTGCCGTTTATCTGCTGATGAAACACAATCAAAAGCTGATCGATTTCGACTTGGACCTGGAGCCTTCAGGGGAGAAaCTGGTATGCAAGAGGACGAGCAGTTTTCCCAACCGTCCAGATTTCTAGACTCCAGGCTGAACTCTACAGTTATGTTGCTGCCAAGAGGAATGAATCCATGAAGAGCGGCCCATCGATGGGAAACCCGCTGAGATTCTTTCCTTCTGCTCATGCTGCTCGTGGATGACGTTGTGGAGCGAGAAGAGCGCTACGTTCGTTCAGACCTCCAGCTGGAGATGGAAATCCAAACTGAGCTTTTGCACTTTGATTGTAATCGTGTCTGAATTTCTGCACGTTTTATTTCAATTTAATCTTTTGCGAGTGTTGCTATGACGCTAAAAAACAGAGCAAAGCCGCGAAGATCTTTGacgcttttttcaacgtttttattCTACGGATTTTGGTGTTTCCGACATTTTTGACACTTgccgtttttgtcgccttttctaaagtttttgtcgctgttttcGCCCCGTTTTCTGAGGTTATAGTcgttttttctgacgttttttgctttttccgaagtttttgtcgctttttccgaagtttttgtcgcttttttcaaggtttttgccTCATTTTCTGAGGTTATAgttgctttttctgacgttttttgcttttttcgaagtttttttagcttttttcaaggtttttgccTCGTTTTCTGAGGTTGTAgtcgctttttctgacgtttttttagctttttccgaagtttttgttgcttttttcaaggtttttgccTCGTTTTCTGAGGTTGtagtcactttttctgacgttttttagctttttccgAGGTTTTTGTCGGCATTTCTGacgtttttggcatttttttctctgaaatttttgcctcgtatttcaatgtttttgccgTTTTTATCTgacgtttttggcactttttaagatatttttgtCGCTTATGTGGTGACGTGCAGATTCAGGAGAAGCACACTACTGCAGTgcttacattacatacacaccacatgtagctacatgctaacgtcaGAGAAACCTGTAATCTTGATTGCAGATGTAGTTAATTTCCCCCCAATTTTGGATCACAGGTACGTTTGTTCAGACCTACAGCTGGAGATGGAAATCCAAACTGAGCTTTTGCACTTAGATTGTAACCGTGTCTGAATTTCTGCACGTTTTATTTCAATATAATCTCTTTGCGAGTGTTGCTATGACGCTAAAAACAGAGCTGGCCCGAACCAATGTGGTGCCCTGTGCGAAATctgtttttgtcgcatttttttAACGTTTTAGACGATTGTTGTTGGCCGTTTTTCGAATGATTGTGGCGCTTTTTTCCCTAAATATTTGCCACTTTTTTTGGTGCTTACTTCTTCACTTtgtcgacatttttgtcatctttttcccccgacatttttctgttttgccGATGTCAATTTTTGTCAATACATGCAGACCCGGGACCTccctagatagttggagatATCACCATCATTATACACATCTGCAACATTACTTATCGGtttctatattatatattttatatacggCATTATTCAGCCTCAGTCGTCACATTCTCATTTTTTTAACGTTGAAAACTGAAATCTTTCCGTTTAATTCTGAACACCAAACAGATTCTCTTTTAATATATTGTTAGATAAAGTTTAGATCATATGTTTAACACAACAAAAGGGAAAAATAGCATCTgggttttgtcgttttttttcctctgtatTCTCACGTTGTTTTCTAATTTCTCATACTGTGACATGTTATATAGCTGTATGTTCATACCATTTGTGTTTATGAGTCGAGCTCTGAGGCCTGcactacgaatcaagatcaacatgcccgtgatctctttcagttaccaggcttcacctaacctaacaactgcGTTCACGCATAAGCTGGGTCAcaacggtggttaacaactagttcaatcaaccatcACGGTTTCCCAATGCAGCATAAAAGAGGCAGTGTTTGCACTTtatgaccaatcacaaacatctaccagagctgcatattttatataagaatagtagggctgtcagcattaacgcgttaatcgcgATGCGATTAAGGGCGGAGCATAACGCATTCAttttttaatcgcatgccggcatttattaatttattttagacTTCAGTCGGCTCAGACTGCTACGAGTGCTACTTGCCGATCTGTGGATGAAACCAAATCCCCAAAAAATTACTACAGCTATatgcaataatgacagattcacacatttttcttttgtttacagtaaataaataatatccaaatacaaatcttaaagtcaagttcataaagtaactttctttgcattcatttgattcccaatcaagatacccTGGTTAAGAATCGCTTTCCATTGtcaatatgtacttaaaaacagttctgaaatgcaaaataatagaattttagtCATGTGATAAaatatgcgattaatcgcgattaactatagaaattcagcgattaatcgcgattaaaaaagATTTATCGTTGGACAGCCCTAAAGAAGAGCAAActacacagacacggttttacaggcaaaatgcaatacagtcgctgcttcctaaaacaggaaggaaagctggcaaaaaaacgACGCTGTAAATGCGTTGTAGTGTATGTGGTAGCGATGCTGTAATGTTGTGTGGAGAGGAATctgccgacactgtttcttgattataaaggtttatttacaaccAGGAATTCAGCATAAATTTACAAGCTCTGAAGAGCCTGGAGAGCGACCAGTttcccagattctcaaaagtcactctgaGGTTCTGCTGTTAACACATGATATATCTATTCTTCATAACTTAGGGTGGGATCAATAATTGACCAACGGCTACAAGCCAACTGGCCTTCTTTTCAACATCTTGGGGGCCCCATTGATAAcactttccagatgtttccagagagGTGTCCTCTGAAAAGTAGTGTAAGGTTCATCCGGATCGTCATGCACATAGATAGTTCATATGAATTTCTTTGTTACCAAAAACTTAAGACAAAGTTTATAAAAAGTCTGTTAGAAGTCCAGATACTACAgcgtaaatcacaactcttatcaagatcacttccccatcagtcaggactaagatctgaccataattacacttgtcctttccataaactgtcgttgctttagccttttatttcagttgcaatcctGACAGTGGTAAGCAATCGTGAgcgcaaataaaaaaatataaaaatatgattCAAACCGATGATCGCATCGgagacacacggctcaagaagccgccaaatagccgatatgtaattctcTCCGCTGAAAATCTATGTCTTTCATAAAGATGTtgttggtctctaaatgttttaacttttctgagcgcacctctctctcc
>XR_005638030.1
TCCCCGGCCAGCCTCCGACTCCCGGCTGCAGATGAGGAGAAACCGTTTTCTACTGCCGTTTATCTGCTGATGAAACACAATCAAAAGCTGATCGATTTCGACTTGGACCTGGAGCCTTCAGGGGAGAAaCTGGTATGCAAGAGGACGAGCAGTTTTCCCAACCGTCCAGATTTCTAGACTCCAGGCTGAACTCTACAGTTATGTTGCTGCCAAGAGGAATGAATCCATGAAGAGCGGCCCATCGATGGGAAACCCGCTGAGATTCTTTCCTTCTGCTCATGCTGCTCGTGGATGACGTTGTGGAGCGAGAAGAGCGCTACGTTCGTTCAGACCTCCAGCTGGAGATGGAAATCCAAACTGAGCTTTTGCACTTTGATTGTAATCGTGTCTGAATTTCTGCACGTTTTATTTCAATTTAATCTTTTGCGAGTGTTGCTATGACGCTAAAAAACAGAGCAAAGCCGCGAAGATCTTTGacgcttttttcaacgtttttattCTACGGATTTTGGTGTTTCCGACATTTTTGACACTTgccgtttttgtcgccttttctaaagtttttgtcgctgttttcGCCCCGTTTTCTGAGGTTATAGTcgttttttctgacgttttttgctttttccgaagtttttgtcgctttttccgaagtttttgtcgcttttttcaaggttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302517 True 3460 lncRNA 0.39 5 26917333 26929013
XR_005638030.1 False 678 lncRNA 0.45 4 26920206 26929021

Neighbor

gene id symbol gene type direction distance location
trnai-aau_34 NA coding downstream 449501 26467759 ~ 26467832 (-)
trnai-aau_33 NA coding downstream 450113 26467147 ~ 26467220 (-)
trnai-aau_32 NA coding downstream 450823 26466437 ~ 26466510 (-)
trnai-aau_31 NA coding downstream 467417 26449843 ~ 26449916 (-)
trnai-aau_30 NA coding downstream 469574 26447686 ~ 26447759 (-)
ssr1 ssr1,LOC104966062 coding upstream 16429 26945450 ~ 26968414 (-)
LOC120552563 NA coding upstream 43826 26972847 ~ 26980874 (-)
LOC120552564 nebl coding upstream 58304 26987325 ~ 27054360 (-)
LOC120552734 nebl coding upstream 117806 27046827 ~ 27129394 (-)
LOC120552735 nebl coding upstream 207750 27136771 ~ 27189544 (-)
G223493 NA non-coding downstream 160481 26756123 ~ 26756852 (-)
G223475 NA non-coding downstream 169864 26738053 ~ 26747469 (-)
G223487 NA non-coding downstream 198518 26676847 ~ 26718815 (-)
G223490 NA non-coding downstream 201570 26711780 ~ 26715763 (-)
G223483 NA non-coding downstream 235963 26658929 ~ 26681370 (-)
G223522 NA non-coding upstream 47457 26976478 ~ 26977294 (-)
G223515 NA non-coding upstream 53763 26982784 ~ 26991750 (-)
G223518 NA non-coding upstream 76302 27005323 ~ 27059504 (-)
G223517 NA non-coding upstream 115816 27044837 ~ 27148007 (-)
G223534 NA non-coding upstream 158712 27087733 ~ 27088197 (-)
LOC120552733 LOC100703031,LOC102297688,LOC106527684,LOC106916028,LOC104953541,LOC106590371,LOC101467375 other downstream 11001 26559435 ~ 26906332 (-)
LOC120552560 NA other downstream 407206 26483929 ~ 26510127 (-)
G223435 NA other downstream 441422 26471704 ~ 26475911 (-)
G223433 NA other downstream 507976 26404001 ~ 26409357 (-)
G223395 cul1,LOC107713664 other downstream 699009 26216885 ~ 26218324 (-)
G223516 LOC107098890,LOC106903449,LOC105416179,LOC103369801,LOC107756860,LOC108228419 other upstream 175577 27104598 ~ 27188218 (-)
G223538 NA other upstream 228952 27157973 ~ 27483161 (-)
LOC120552569 NA other upstream 329352 27258373 ~ 28498012 (-)
rreb1a rreb1 other upstream 586939 27515960 ~ 27625569 (-)
G223640 NA other upstream 711543 27640564 ~ 27685979 (-)

Expression


Co-expression Network