LOC120552596


Basic Information

Item Value
gene id LOC120552596
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 27694340 ~ 27700381 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU302745
AATTGAAGCAGAGTGAGACTTctcatttcctctttctttaACTATCTTTGGCTACAACGactatttgttttattgttttccaAGTTTAACGTTATTTCATTTAATTATGTCTTTACTGTAACGACTGACACGGCACAAAGCTGTCCCTCAGAATATAACTGCTTTCCCGGTCTAATGTAAGTGTAAATATAACGCCTGTGACCTAAATATCAGTATAAAAACGGAAAAATACGGATTTAGCGCTCgctaggctaatgttagcttcttGTTAGCTTGTTTTAGCTAACTGGCGCAGCCATACCAAGAGgatgAGTGGAGgagtccagcagcagcagttgtaTTTCCTGGGCCTCCCAGACCTGAAGAAGCTGTGCTGTGTGACTATGGCCCTGCCAGAGGACCAGGAGCTGAGGAGCAGACAGATCAAGACCTGCAGAGAGCTGATTTTGCTGTACTCTGATATTGTGGCCTCTCCAGCTCTGGACTCCTTGAGTGAAATCACAGTGGTCATGGccATGTCGTATTTCCAGAAAGGCATCGTTCAGATGTTTGCCCAGAGACGCAGTCTGCAGcTGAGCTcctctcagtgtgtgtttccAGGTGTCCTCCAGTATTGTGTGTCCTTCTCTCTGATCACCAGACTGGCTCCCAGCTGGAACAAAGCAGGACTCTACCTCATCGCTGG
>XM_039790778.1
GCTACAACGactatttgttttattgttttccaAGTTTAACGTTATTTCATTTAATTATGTCTTTACTGTAACGACTGACACGGCACAAAGCTGTCCCTCAGAATATAACTGCTTTCCCGGTCTAATgatgAGTGGAGgagtccagcagcagcagttgtaTTTCCTGGGCCTCCCAGACCTGAAGAAGCTGTGCTGTGTGACTATGGCCCTGCCAGAGGACCAGGAGCTGAGGAGCAGACAGATCAAGACCTGCAGAGAGCTGATTTTGCTGTACTCTGATATTGTGGCCTCTCCAGCTCTGGACTCCTTGAGTGAAATCACAGTGGTCATGGccATGTCGTATTTCCAGAAAGGCATCGTTCAGATGTTTGCCCAGAGACGCAGTCTGCAGcTGAGCTcctctcagtgtgtgtttccAGGTGTCCTCCAGTATTGTGTGTCCTTCTCTCTGATCACCAGACTGGCTCCCAGCTGGAACAAAGCAGGACTCTACCTCATCGCTGGCAGTATATACAAATGCTACAGGCACTGGCAGTCCTAATGATTAACGAGAAGTTAAAAATTTATAAATTAAAGCACCAAAACGTCAAAAAAGGGTCATTTATTTTGGAAAAAGctaaagaaaaaacattaaaattgaCACGTCTCGATTCAGGAAATCATTGGCGGTACCCAGAACTATAATATTACTATAGCTGACATGTCTTTGGACCTATAGGCAGTCCTTCCAGATAAatatggagtttttttgtgattgttgcggggcaaaaatccttgat
>XM_039790779.1
GCTACAACGactatttgttttattgttttccaAGTTTAACGTTATTTCATTTAATTATGTCTTTACTGTAACGACTGACACGGCACAAAGCTGTCCCTCAGAATATAACTGCTTTCCCGGTCTAATCTTGTTTTAGCTAACTGGCGCAGCCATACCAAGAGgatgAGTGGAGgagtccagcagcagcagttgtaTTTCCTGGGCCTCCCAGACCTGAAGAAGCTGTGCTGTGTGACTATGGCCCTGCCAGAGGACCAGGAGCTGAGGAGCAGACAGATCAAGACCTGCAGAGAGCTGATTTTGCTGTACTCTGATATTGTGGCCTCTCCAGCTCTGGACTCCTTGAGTGAAATCACAGTGGTCATGGccATGTCGTATTTCCAGAAAGGCATCGTTCAGATGTTTGCCCAGAGACGCAGTCTGCAGcTGAGCTcctctcagtgtgtgtttccAGGTGTCCTCCAGTATTGTGTGTCCTTCTCTCTGATCACCAGACTGGCTCCCAGCTGGAACAAAGCAGGACTCTACCTCATCGCTGGCAGTATATACAAATGCTACAGGCACTGGCAGTCCTAATGATTAACGAGAAGTTAAAAATTTATAAATTAAAGCACCAAAACGTCAAAAAAGGGTCATTTATTTTGGAAAAAGctaaagaaaaaacattaaaattgaCACGTCTCGATTCAGGAAATCATTGGCGGTACCCAGAACTATAATATTACTATAGCTGACATGTCTTTGGACCTATAGGCAGTCCTTCCAGATAAatatggagtttttttgtgattgttgcggggcaaaaatccttgat
>XM_039790780.1
GCTACAACGactatttgttttattgttttccaAGTTTAACGTTATTTCATTTAATTATGTCTTTACTGTAACGACTGACACGGCACAAAGCTGTCCCTCAGAATATAACTGCTTTCCCGGTCTAATGTAAGTGTAAATATAACGCCTGTGACCTAAATATCAGTATAAAAACGGAAAAATACGGATTTAGCGCTCgctaggctaatgttagcttcttGTTAGCTTGTTTTAGCTAACTGGCGCAGCCATACCAAGAGgatgAGTGGAGgagtccagcagcagcagttgtaTTTCCTGGGCCTCCCAGACCTGAAGAAGCTGTGCTGTGTGACTATGGCCCTGCCAGAGGACCAGGAGCTGAGGAGCAGACAGATCAAGACCTGCAGAGAGCTGATTTTGCTGTACTCTGATATTGTGGCCTCTCCAGCTCTGGACTCCTTGAGTGAAATCACAGTGGTCATGGccATGTCGTATTTCCAGAAAGGCATCGTTCAGATGTTTGCCCAGAGACGCAGTCTGCAGcTGAGCTcctctcagtgtgtgtttccAGGTGTCCTCCAGTATTGTGTGTCCTTCTCTCTGATCACCAGACTGGCTCCCAGCTGGAACAAAGCAGGACTCTACCTCATCGCTGGCAGTATATACAAATGCTACAGGCACTGGCAGTCCTAATGATTAACGAGAAGTTAAAAATTTATAAATTAAAGCACCAAAACGTCAAAAAAGGGTCATTTATTTTGGAAAAAGctaaagaaaaaacattaaaattgaCACGTCTCGATTCAGGAAATCATTGGCGGTACCCAGAACTATAATATTACTATAGCTGACATGTCTTTGGACCTATAGGCAGTCCTTCCAGATAAatatggagtttttttgtgattgttgcggggcaaaaatccttgat
>XM_039790781.1
GCTACAACGactatttgttttattgttttccaAGTTTAACGTTATTTCATTTAATTATGTCTTTACTGTAACGACTGACACGGCACAAAGCTGTCCCTCAGAATATAACTGCTTTCCCGGTCTAATgatgAGTGGAGgagtccagcagcagcagttgtaTTTCCTGGGCCTCCCAGACCTGAAGAAGCTGTGCTGTGTGACTATGGCCCTGCCAGAGGACCAGGAGCTGAGGAGCAGACAGATCAAGACCTGCAGAGAGCTGATTTTGCTGTACTCTGATATTGTGGCCTCTCCAGCTCTGGACTCCTTGAGTGAAATCACAGTGGTCATGGccATGTCGTATTTCCAGAAAGGCATCGTTCAGATGTTTGCCCAGAGACGCAGTCTGCAGcTGAGCTcctctcagtgtgtgtttccAGGTGTCCTCCAGTATTGTGTGTCCTTCTCTCTGATCACCAGACTGGCTCCCAGCTGGAACAAAGCAGGACTCTACCTCATCGCTGGATAGGCAGTATATACAAATGCTACAGGCACTGGCAGTCCTAATGATTAACGAGAAGTTAAAAATTTATAAATTAAAGCAC
>XM_039790783.1
GCTACAACGactatttgttttattgttttccaAGTTTAACGTTATTTCATTTAATTATGTCTTTACTGTAACGACTGACACGGCACAAAGCTGTCCCTCAGAATATAACTGCTTTCCCGGTCTAATgatgAGTGGAGgagtccagcagcagcagttgtaTTTCCTGGGCCTCCCAGACCTGAAGAAGCTGTGCTGTGTGACTATGGCCCTGCCAGAGGACCAGGAGCTGAGGAGCAGACAGATCAAGACCTGCAGAGAGCTGATTTTGCTGTACTCTGATATTGTGGCCTCTCCAGCTCTGGACTCCTTGAGTGAAATCACAGTGGTCATGGccATGTCGTATTTCCAGAAAGGCATCGTTCAGATGTTTGCCCAGAGACGCAGTCTGCAGGTTACCTGTTGGGGTCTTAAAAGTATTCAAAAAGTCTTGAATTTAATAttcaaaaaaaattcaaaataaaagttgtgtCCTTTTTGTAGGATCAAAGAAAT

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process

KEGG:

id description
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
TU302745 False 685 TUCP 0.46 5 27694854 27700381
XM_039790778.1 False 779 mRNA 0.44 6 27694340 27700331
XM_039790779.1 False 814 mRNA 0.44 7 27694340 27700331
XM_039790780.1 True 910 mRNA 0.43 6 27694340 27700331
XM_039790781.1 False 584 mRNA 0.47 6 27694540 27700331
XM_039790783.1 False 492 mRNA 0.43 5 27695838 27700331

Neighbor

gene id symbol gene type direction distance location
LOC120552593 NA coding downstream 381975 27310012 ~ 27312365 (-)
LOC120552591 NA coding downstream 469348 27223754 ~ 27224992 (-)
LOC120552579 NA coding downstream 489187 27195330 ~ 27205153 (-)
LOC120552735 nebl coding downstream 504796 27136771 ~ 27189544 (-)
LOC120552734 nebl coding downstream 564946 27046827 ~ 27129394 (-)
LOC120552567 NA coding upstream 602953 28303334 ~ 28355647 (-)
LOC120552600 NA coding upstream 676698 28377079 ~ 29112293 (-)
dnah5l LOC103377303,LOC103367559 coding upstream 1229850 28930231 ~ 29094205 (-)
LOC120552571 NA coding upstream 1424833 29125214 ~ 29147661 (-)
LOC120552587 hus1 coding upstream 1451053 29151434 ~ 29161971 (-)
G223627 NA non-coding downstream 38932 27598141 ~ 27655408 (-)
G223633 NA non-coding downstream 90452 27603523 ~ 27603888 (-)
G223609 NA non-coding downstream 101875 27532743 ~ 27592465 (-)
G223648 NA non-coding upstream 2232 27702613 ~ 27802788 (-)
G223664 NA non-coding upstream 73560 27773941 ~ 27865723 (-)
G223651 NA non-coding upstream 94432 27794813 ~ 27841026 (-)
G223671 NA non-coding upstream 112916 27813297 ~ 27861633 (-)
G223679 NA non-coding upstream 153295 27853676 ~ 27854435 (-)
G223640 NA other downstream 8361 27640564 ~ 27685979 (-)
rreb1a rreb1 other downstream 68771 27515960 ~ 27625569 (-)
G223538 NA other downstream 211179 27157973 ~ 27483161 (-)
G223516 LOC107098890,LOC106903449,LOC105416179,LOC103369801,LOC107756860,LOC108228419 other downstream 506122 27104598 ~ 27188218 (-)
LOC120552733 LOC100703031,LOC102297688,LOC106527684,LOC106916028,LOC104953541,LOC106590371,LOC101467375 other downstream 788008 26559435 ~ 26906332 (-)
G223645 NA other upstream 38401 27738782 ~ 27739972 (-)
G223665 fars2 other upstream 50324 27750705 ~ 27754334 (-)
G223646 fars2,LOC102791206 other upstream 55965 27756346 ~ 27795851 (-)
G223681 NA other upstream 196753 27897134 ~ 27915833 (-)
G223686 LOC100697526 other upstream 310647 28011028 ~ 28517926 (-)

Expression


Co-expression Network