LOC120552609


Basic Information

Item Value
gene id LOC120552609
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 29460675 ~ 29534359 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU303059
GGAGAGTCCaaactgtagactggagactctgagATTGAAGGACTGCagtttgtcagagatcagctgtgctgctctggcctcagctctgaagtccaacccctcccatctgagagtgcTGAACCTGAGCTACAACTACAACCTGAAGGATTCAGCAGTGAAGCTGCTGTGTGCTGGATTGGAGAGTCCaaactgtagactggagactctgagattgAGGAGCTGCGGattgtcagagatcagctgtgctactctggcctcagctctgaagtccaacccctcccaccTGAGAGAGCTGAACCTGAGCTACAACAACAACCTGAAGGATTCAGGAGTAAAGCAGCTGTGTGCTGTATTGGAGAGTCCaaactgtagactggagactctgagATTGAGGAGCTGCGGattgtcagagatcagctgtgctcctctggcctcagctctgatgtccaacccctcccatctgagagagctgaaCCTGAGCTACAACCACAACctgaaggattcaggagtgaagcgtCTGTGTGCTGTATTGAGAGTCCaaactgtagactggagactctgagattgAATTTCTGCagtttgtcagagatcagctgtgatgctctggcctcagctctgaagtccaacccctcccatttgagagagctggacctgggCTACAACAACGAGCTGAAAGATTCAGGAGTCAAGCTGCTGTGTGGTTTTCTGGAAATACCAAACTATAGACTGGAGAATCTGGGattgAGGAGCCGCggtttgtcagagatcagctgttcTCCTCTGGTCTCATCTCTGAAGTCCaaccctcccatctgagagagatgGACCTGAGCTTGAACAACCTGAAGGAGTCAGATATGAAGCAGCTTTGGTGATCTGAAGGAGAGTCCAgactgtagactggagactctggAAGTAAGTAGAGGGTTGGATTCAGTCCGTGCTGGTTTTAGCAGTATCAAACTAAACACAGTTAGTATCAAAGCAAAGATCCAGTATTTTCTGTAAACCTCCAACCTTGTCAGTAAAGCTttgagatgagagagagaacagacagccaatcagagactgTTCTCTCTGAACTCAACATCAGTAAATCATCATTAAAGTGAGCAGTGAACATCTCTCGTTTCTGCA
>TU303127
GGAGAGTCCaaactgtagactggagactctgaaATGGGAGTGATCTCTGTCAGAGTGATCAGAAGGAGGATGTGTTGGAGGATCAGCTGAGTCCTGATGATCCCGAgcttgaagcagcagcagcacctctAAATGGGCCATGTTACTGGGAGGTAGAGTGGAGAGACTGACTGAGGCTCTGCACGCTTTCACATTAGCGAACGGCACGTGACCATGAAAGAAGGATGTCGGGCAAGTTGATTGGCCGACATTAGCCTCTCTGGGTCGGGGGCTCTGTCTACATCAGAATCAGTGGAAACATCTTCTATATTAACAGTTGAAATGTAAACTAACGTTAAAAGGTGAGGTGATTGTCATGCTGTCCACAGCAATTGTCGAGATTAgcttcacacactcacacagagacacacacactcaaacacacacacacactcacacacacaccacacactcacacacagacatacagacacacagacacacacactttaacccCATGCTAATAGGGAAGAGTTGGCTCAAGGATGCCGACAGAAGAAGCTCTCAGTGAATGAAAAAGAACTGATATGAATGTaatcaaattaataaatcagTTTGTTGTTTGGACAAATCATTGTGTATTTACCATTAATGCAATTTCatgaaaaagtgttttatgttttccaGAGCAGCGGTGTCAAACTCACCTTCACTAAGAG
>XR_005638042.1
AAACCTTTTCAGCTCTAAAAAGATTAGTAAGCATTGAATGATTTCAAACAAGAACATTGTCTTCTAAATTTACAtaatttattctttattcagattgAATTTCTGCagtttgtcagagatcagctgtgatgctctggcctcagctctgaagtccaacccctcccatttgagagagctggacctgggCTACAACAACGAGCTGAAAGATTCAGGAGTCAAGCTGCTGTGTGGTTTTCTGGAAATACCAAACTATAGACTGGAGAATCTGGGattgAGGAGCCGCggtttgtcagagatcagctgttcTCCTCTGGTCTCATCTCTGAAGTCCaaccctcccatctgagagagatgGACCTGAGCTTGAACAACCTGAAGGAGTCAGATATGAAGCAGCTTTGGTGATCTGAAGGAGAGTCCAgactgtagactggagactctggAAATGGGAGTGATCTCTGTCAGAGTGATCAGAAGGAGGATGTGTTGGAGGATCAGCTGAGTCCTGATGATCCCGAgcttgaagcagcagcagcacctctAAATGGGCCATGTTACTGGGAGGTAGAGTGGAGAGACTGACTGAGGCTCTGCACGCTTTCACATTAGCGAACGGCACGTGACCATGAAAGAAGGATGTCGGGCAAGTTGATTGGCCGACATTAGCCTCTCTGGGTCGGGGGCTCTGTCTACATCAGAATCAGTGGAAACATCTTCTATATTAACAGTTGAAATGTAAACTAACGTTAAAAGGTGAGGTGATTGTCATGCTGTCCACAGCAATTGTCGAGATTAgcttcacacactcacacagagacacacacactcaaacacacacacacactcacacacacaccacacactcacacacagacatacagacacacagacacacacactttaacccCATGCTAATAGGGAAGAGTTGGCTCAAGGATGCCGACAGAAGAAGCTCTCAGTGAATGAAAAAGAACTGATATGAATGTaatcaaattaataaatcagTTTGTTGTTTGGACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU303059 True 1137 lncRNA 0.49 6 29463074 29533684
TU303127 False 698 lncRNA 0.45 2 29460675 29534359
XR_005638042.1 False 1022 lncRNA 0.45 3 29460763 29464300

Neighbor

gene id symbol gene type direction distance location
LOC120552587 hus1 coding downstream 298704 29151434 ~ 29161971 (-)
LOC120552571 NA coding downstream 313014 29125214 ~ 29147661 (-)
LOC120552600 NA coding downstream 348382 28377079 ~ 29112293 (-)
dnah5l LOC103377303,LOC103367559 coding downstream 366470 28930231 ~ 29094205 (-)
LOC120552567 NA coding downstream 1105028 28303334 ~ 28355647 (-)
dnph1 NA coding upstream 68743 29603102 ~ 29610341 (-)
LOC120552739 NA coding upstream 94946 29629305 ~ 29672772 (-)
inhbaa inhba,LOC104934797,LOC102293179,LOC101479519 coding upstream 212149 29746508 ~ 29750259 (-)
eci2 eci2 coding upstream 327443 29861802 ~ 29895595 (-)
LOC120552613 NA coding upstream 366051 29900410 ~ 29924741 (-)
G223876 NA non-coding downstream 102783 29356619 ~ 29357892 (-)
G223873 NA non-coding downstream 105794 29348574 ~ 29354881 (-)
G223870 LOC107105063 non-coding downstream 121013 29338253 ~ 29339662 (-)
G223852 NA non-coding downstream 292998 29164646 ~ 29167677 (-)
G223851 NA non-coding downstream 295675 29163956 ~ 29165000 (-)
G223915 NA non-coding upstream 48730 29583089 ~ 29583794 (-)
G223896 NA non-coding upstream 55474 29589833 ~ 29690379 (-)
G223898 NA non-coding upstream 80061 29614420 ~ 29694809 (-)
G223906 NA non-coding upstream 81422 29615781 ~ 29617970 (-)
G223904 NA non-coding upstream 122862 29657221 ~ 29710009 (-)
LOC120552583 NA other downstream 140741 29300690 ~ 29319934 (-)
LOC120552566 NA other downstream 614422 28781890 ~ 28846253 (-)
G223686 LOC100697526 other downstream 942749 28011028 ~ 28517926 (-)
G223746 NA other downstream 1265250 28176365 ~ 28195425 (-)
G223681 NA other downstream 1544842 27897134 ~ 27915833 (-)
G223911 NA other upstream 16036 29550395 ~ 29563368 (-)
LOC120552738 yipf3,LOC106605823 other upstream 77633 29611992 ~ 29620659 (-)
G223897 NA other upstream 177655 29712014 ~ 29746456 (-)
LOC120552628 NA other upstream 316297 29850656 ~ 29856972 (-)
G224031 NA other upstream 863517 30397876 ~ 30578444 (-)

Expression


Co-expression Network