LOC120552608


Basic Information

Item Value
gene id LOC120552608
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 29479809 ~ 29543351 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU303131
GGCTGTCAGACTATGAAGAGTGACTGGTCGATGTCACAACCTGATTACTTGAGTAATGAACCGggaccctcagacacaaaAGTTCAGAACAACAGACGGAGAGCAGAGCCTGTAGTGTCTGGCTGTCAGTCTCTGAAGAGTGACCGGTCGATGCCAGAACCTGATAACGTCAGTAATGAACCCGGACCttcagacacaaaACTGACCTCTCTGAAGATGAGTgatttggaggaagaggaggatggagcAGAGTCTGTAGTATCTGGCTGTCAGTCTATGAAGAGTGACTGGTCCAAACATGAACCTCTATTCTTCAGTAAAgaacctggaccctcagacacaaaAAAGACGGAGAGGAGTGAAACTTTTGAGGAGGAACAGCCGTCCTGCTGTGCTTTGTGTCAGGACGTCCTGAAGGATCCAGTCTCTACCAGCTGTGGACTCTGGTTCTGCAGACAGTGCATCACCTCATACTGGGACCAGTCTGCTTCATCAGGGGACTCCTGCTGTCCCCAGTGTGGAGAAAGATCCAGAACAAGTAAgactgtccatctgtctgctgATGTCTT
>TU303132
GGCTGTCAGACTATGAAGAGTGACTGGTCGATGTCACAACCTGATTACTTGAGTAATGAACCGggaccctcagacacaaaaaagagggaaaggaGTGATGTTTGTGAGGAGGACCAGCCGTCCTGCTGTGCTTTGTGTCAGGACGTCCTGAAGGATCCAGTCTCTATCAGCTGTGGACACTGGTTCTGCAGACAGTGCATCACCTCATACTGGGACCAGTCTGCTTCATCAGGAGACTCCTGCTGTCCCCAGTGTGGAGAAAGATCCAGAACAA
>TU303133
GCTGTTTTACCTCTCAAACTGACTTCAGATCAGAAGATGAGGGGTTTGGATAGGATTCTTCTGCAAGAATTCAGCAATGAACCTGTACACTCAGACACAAGTTCAGAACAACAGACGGAGAGCAGAGCCTGTAGTGTCTGGCTGTCAGTCTCTGAAGAGTGACCGGTCGATGCCAGAACCTGATAACGTCAGTAATGAACCCGGACCttcagacacaaaACTGACCTCTCTGAAGATGAGTgatttggaggaagaggaggatggagcAGAGTCTGTAGTATCTGGCTGTCAGTCTATGAAGAGTGACTGGTCCAAACATGAACCTCTATTCTTCAGTAAAgaacctggaccctcagacacaaaAGTTCAGAACAACAGACGGAGAGCAGAGCCTGTAGTGTCTGGCTGTCAGTCTCTGAAGAGTGACCGGTCGATGCCAGAACCTGATAAC
>XR_005638041.1
TTGAGACTCCATtttagttcagttcagtttattcttTGTCCCAAAGCTCAATTTGTATGCAGCAGGAATATGGAAGAATATacaacacaaaccacacaacAGTTAACAGAAGTGTGACCAGAACAAAGCAGAGCAGGAGGAGGGAAACTGAAGGCTGAGGCAGGATCAGAAGATGAGGGGTTTGGATAGGATTCTTCTGCAAGAATTCAGCAATGAACCTGTACACTCAGACACAAACGAAAGAGATCTGTGTCTGAATCCACTGTCGTCACGGAGTTAAAGGCAGTgaattccattaaaatggtggaggaggtggagatttgagaagcGCTATGCATGGGAGGTCCGGTCCAGAGAGGGATATTGGATCACATTGATTCTTCAGATCCCAGAGTCTTCCAGGGGTTacagattcccagttcagtgggctgggtggcGCTGCTACAGGATCAAGACTCAGAACTTATAACGGATTGCCCTGGATTCCTTCTTCATGGTGGTAGGGACAAGAGTTGAGAATTAGCACTAGCTATAAACTCTATATGCTGCGCATCAGTTACGGGCTTTGTATTGTAACTATGTTTGCTTGTATggtccctgttaaataaacaaatacataaataaaataggacaaacagaaaccaaacttaTATGGGCCCCAAc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU303131 False 569 TUCP 0.50 4 29479809 29543351
TU303132 False 274 lncRNA 0.51 2 29540483 29543351
TU303133 False 451 TUCP 0.48 4 29480618 29490705
XR_005638041.1 True 663 lncRNA 0.43 4 29485731 29491216

Neighbor

gene id symbol gene type direction distance location
LOC120552587 hus1 coding downstream 317838 29151434 ~ 29161971 (-)
LOC120552571 NA coding downstream 332148 29125214 ~ 29147661 (-)
LOC120552600 NA coding downstream 367516 28377079 ~ 29112293 (-)
dnah5l LOC103377303,LOC103367559 coding downstream 385604 28930231 ~ 29094205 (-)
LOC120552567 NA coding downstream 1124162 28303334 ~ 28355647 (-)
dnph1 NA coding upstream 59751 29603102 ~ 29610341 (-)
LOC120552739 NA coding upstream 85954 29629305 ~ 29672772 (-)
inhbaa inhba,LOC104934797,LOC102293179,LOC101479519 coding upstream 203157 29746508 ~ 29750259 (-)
eci2 eci2 coding upstream 318451 29861802 ~ 29895595 (-)
LOC120552613 NA coding upstream 357059 29900410 ~ 29924741 (-)
G223876 NA non-coding downstream 121917 29356619 ~ 29357892 (-)
G223873 NA non-coding downstream 124928 29348574 ~ 29354881 (-)
G223870 LOC107105063 non-coding downstream 140147 29338253 ~ 29339662 (-)
G223852 NA non-coding downstream 312132 29164646 ~ 29167677 (-)
G223851 NA non-coding downstream 314809 29163956 ~ 29165000 (-)
G223915 NA non-coding upstream 39738 29583089 ~ 29583794 (-)
G223896 NA non-coding upstream 46482 29589833 ~ 29690379 (-)
G223898 NA non-coding upstream 71069 29614420 ~ 29694809 (-)
G223906 NA non-coding upstream 72430 29615781 ~ 29617970 (-)
G223904 NA non-coding upstream 113870 29657221 ~ 29710009 (-)
LOC120552583 NA other downstream 159875 29300690 ~ 29319934 (-)
LOC120552566 NA other downstream 633556 28781890 ~ 28846253 (-)
G223686 LOC100697526 other downstream 961883 28011028 ~ 28517926 (-)
G223746 NA other downstream 1284384 28176365 ~ 28195425 (-)
G223681 NA other downstream 1563976 27897134 ~ 27915833 (-)
G223911 NA other upstream 7044 29550395 ~ 29563368 (-)
LOC120552738 yipf3,LOC106605823 other upstream 68641 29611992 ~ 29620659 (-)
G223897 NA other upstream 168663 29712014 ~ 29746456 (-)
LOC120552628 NA other upstream 307305 29850656 ~ 29856972 (-)
G224031 NA other upstream 854525 30397876 ~ 30578444 (-)

Expression


Co-expression Network