LOC120552738 (yipf3,LOC106605823)


Basic Information

Item Value
gene id LOC120552738
gene name yipf3,LOC106605823
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 29611992 ~ 29620659 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU303140
ggtacacacacacacacacacacacacactctcactgctgGGTTACGGTCTGTTTGGGCACTGCGTGGTCCTCCTCATCACCTACAACATCCACTTCCACTTCCTGTTCTACGTGCTGTGGCTGCTGTGTGGAGGACTGTCCACTCTGCGCATGgtggggGCCCTGCTGTCCCGTACGGTGGGTCAGACCCCCCGTCTGCTGCTCTGCGGGACTCTCTCCGTCCTCCACATGCTCTTCCTGTTCTACCTGCACTTCGCCTACCACAAGATCCTCGAAGGTCAGACACCACGTCACATTATAACCTGTCGTACAGCCTCTATAACCTGTCGTACAGCTCTATAACCTGTCGTACAGCTCTATAACCTGTCATACAGCCTCTATAACCTGTCACACAGCCTCTATAACCTGTCACACAGCCTCTATAACCTGTCACACAGCCTCTATGACCTGTCACACAGCCTCTATGACCTGTCACACAGCCTCTATGACCTGTCACACAGCCTCTATGACCTGTCACACAGCCTCTATGACCTGTCATACAGCTCTATGACCTGTCATACAGCCTCTATGACCTGTCATACAGCTCTATGACCTGTCATACAGCTCT
>TU303143
ggtacacacacacacacacacacacacactctcactgctgGGTTACGGTCTGTTTGGGCACTGCGTGGTCCTCCTCATCACCTACAACATCCACTTCCACTTCCTGTTCTACGTGCTGTGGCTGCTGTGTGGAGGACTGTCCACTCTGCGCATGgtggggGCCCTGCTGTCCCGTACGGTGGGTCAGACCCCCCGTCTGCTGCTCTGCGGGACTCTCTCCGTCCTCCACATGCTCTTCCTGTTCTACCTGCACTTCGCCTACCACAAGATCCTCGAAGGTCAGACACCACGTCACATTATAACCTGTCGTACAGCCTCTATAACCTGTCGTACAGCTCTATAACCTGTCGTACAGCTCTATAACCTGTCGTACAGCCTCTATAACCTGTCGTACAGCCTCTATAACCTGTCGTACAGCTCTATAACCTGTCATACAGCCTCTATGACCTGTCATACAGCTCTATAACCTGTCACACAGCCTCTATGACCTGTCGTACAGCCTCTA
>XM_039790966.1
GACTGATGGGAACAGCCATAGGAACATGTTTCGGTTACTGGCTCGGTGTTTCCTCCTTCATCTACTTCCTGCATCTAATCAACtcactgctgGGTTACGGTCTGTTTGGGCACTGCGTGGTCCTCCTCATCACCTACAACATCCACTTCCACTTCCTGTTCTACGTGCTGTGGCTGCTGTGTGGAGGACTGTCCACTCTGCGCATGgtggggGCCCTGCTGTCCCGTACGGTGGGTCAGACCCCCCGTCTGCTGCTCTGCGGGACTCTCTCCGTCCTCCACATGCTCTTCCTGTTCTACCTGCACTTCGCCTACCACAAGATCCTCGAAGGTCAGACACCACGTCACATTATAACCTGTCGTACAGCCTCTATAACCTGTCGTACAGCTCTATAACCTGTCGTACAGCTCTATAACCTGTCGTACAGCTCTATAACCTGTCGTACAGCCTCTATAACCTGTCGTACAGCCTCTATAACCTGTCGTACAGCCTCTATAACCTGTCGTACAGCCTCTATGACCTGTCGTACAGCCTCTATGACCTGTCGTACAGCCTCTATAACCTGTCGTACAGCTCTATAACCTGTCGTACAGCTCTATAACCTGTCGTACAGCTCTATGACCTGTCATACAGCCTCTATGACCTGTCGTACAGCCTCTATAACCTGTCGTACAGCTCTATAACCTGTCGTACAGCCTCTATAACCTGTCGTACAGCCTCTATAACCTGTCGTACAGCCTCTATAACCTGTCGTACAGCTCTATAACCTGTCATACAGC

Function

symbol description
yipf3 Predicted to act upstream of or within cell differentiation. Predicted to be located in cytoplasm and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human YIPF3 (Yip1 domain family member 3).

NR:

description
PREDICTED: protein YIPF3

GO: NA

KEGG:

id description
K22941 YIPF3, KLIP1; protein YIPF3

RNA

RNA id representative length rna type GC content exon number start site end site
TU303140 False 608 lncRNA 0.53 5 29611992 29617412
TU303143 False 505 lncRNA 0.53 5 29613143 29617412
XM_039790966.1 True 779 mRNA 0.51 4 29613588 29620659

Neighbor

gene id symbol gene type direction distance location
dnph1 NA coding downstream 1651 29603102 ~ 29610341 (-)
LOC120552587 hus1 coding downstream 450021 29151434 ~ 29161971 (-)
LOC120552571 NA coding downstream 464331 29125214 ~ 29147661 (-)
LOC120552600 NA coding downstream 499699 28377079 ~ 29112293 (-)
dnah5l LOC103377303,LOC103367559 coding downstream 517787 28930231 ~ 29094205 (-)
LOC120552739 NA coding upstream 8646 29629305 ~ 29672772 (-)
inhbaa inhba,LOC104934797,LOC102293179,LOC101479519 coding upstream 125849 29746508 ~ 29750259 (-)
eci2 eci2 coding upstream 241143 29861802 ~ 29895595 (-)
LOC120552613 NA coding upstream 279751 29900410 ~ 29924741 (-)
xylb xylb coding upstream 675823 30296482 ~ 30333279 (-)
G223915 NA non-coding downstream 28198 29583089 ~ 29583794 (-)
G223821 NA non-coding downstream 73375 29475244 ~ 29538617 (-)
LOC120552609 NA non-coding downstream 77633 29460675 ~ 29534359 (-)
G223876 NA non-coding downstream 254100 29356619 ~ 29357892 (-)
G223873 NA non-coding downstream 257111 29348574 ~ 29354881 (-)
G223904 NA non-coding upstream 36562 29657221 ~ 29710009 (-)
G223905 NA non-coding upstream 72533 29693192 ~ 29723375 (-)
G223899 sugct non-coding upstream 79900 29700559 ~ 29792987 (-)
G223895 NA non-coding upstream 119184 29739843 ~ 29786606 (-)
G223894 NA non-coding upstream 121511 29742170 ~ 29743831 (-)
G223911 NA other downstream 48624 29550395 ~ 29563368 (-)
LOC120552608 NA other downstream 68641 29479809 ~ 29543351 (-)
LOC120552583 NA other downstream 292058 29300690 ~ 29319934 (-)
LOC120552566 NA other downstream 765739 28781890 ~ 28846253 (-)
G223686 LOC100697526 other downstream 1094066 28011028 ~ 28517926 (-)
G223897 NA other upstream 91355 29712014 ~ 29746456 (-)
LOC120552628 NA other upstream 229997 29850656 ~ 29856972 (-)
G224031 NA other upstream 777217 30397876 ~ 30578444 (-)
LOC120552615 NA other upstream 784524 30405183 ~ 30420550 (-)
LOC120552614 NA other upstream 826207 30446866 ~ 30493379 (-)

Expression


Co-expression Network