LOC120552533


Basic Information

Item Value
gene id LOC120552533
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 31284694 ~ 31312314 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU303689
TATGttgcaggaccagccaaagtaggaaaaaagtgcaacttatagtccggaaaatacggtacaaATCATACAGgggcaaaacacaacacacagggcAACACACAGGGCAACTAATCTCTACAGGAAACACACCTGACCAACAGCTGACCAACAGCTGACCAACAGCTGACCAACAGCTGACCAACAGCTGACTAACAGCTGATCTCTGTTCAGGAAACACGAGAAGCTACACTCAGCGGAGCGGCCGTTCGTCTGTGAGATCTGCACCAAAGCTTTCACCACCCACGCTCACCttaaagAACACCTGAAGATCCACACGGG
>TU303690
gggCAACACACAGGGCAGCTAATCTCTACAGGAAACACACCTGACCAACAGCTGACCAACAGCTGACCAACAGCTGACCAACAGCTGACCAACAGCTGACCAACAGCTGACTAACAGCTGATCTCTGTTCAGGAAACACGAGAAGCTACACTCAGCGGAGCGGCCGTTCGTCTGTGAGATCTGCACCAAAGCTTTCACCACCCACGCTCACCttaaagAACACCTGAAGATCCACACGGG
>TU303691
AGAGCCGGCTCAGGAAACACACCTGACCAACAGCTGACTAAGACCTGACCAACAGCTGACCAACAGCTGACCAACAGCTGACTAACAGCTGATCTCTGTTCAGGAAACACGAGAAGCTACACTCAGCGGAGCGGCCGTTCGTCTGTGAGATCTGCACCAAAGCTTTCACCACCCACGCTCACCttaaagAACACCTGAAGATCCACACGGG
>TU303693
AGAGCCGGCTCAGGAAACACACCTGACCAACAGCTGACTAAGACCTGACCAACAGCTGACCAACAGCTGACCAACAGCTGACCAACAGCTGACCAACAGCTGACTAACAGCTGATCTCTGTTCAGGAAACACGAGAAGCTACACTCAGCGGAGCGGCCGTTCGTCTGTGAGATCTGCACCAAAGCTTTCACCACCCACGCTCACCttaaaggtacacacacacacacacacacacacacacacacacacacacacacaaacacacacacacaggtacacacacacacacacacacacaggtacacacacacacacacacacacacacacac
>XR_005638027.1
GTGGCAAGAGCTTCCCTGACAGAGCCGGCTCAGGAAACACGAGAAGCTACACTCAGCGGAGCGGCCGTTCGTCTGTGAGATCTGCACCAAAGCTTTCACCACCCACGCTCACCttaaagAACACCTGAAGATCCACACGGGTCAAAGCCCTACAGGTGTGACGCTTGTGGGAAATC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU303689 False 321 lncRNA 0.50 3 31301134 31302062
TU303690 False 240 lncRNA 0.53 3 31301134 31312314
TU303691 False 211 lncRNA 0.54 4 31301134 31303019
TU303693 True 331 lncRNA 0.52 3 31284694 31303019
XR_005638027.1 False 176 lncRNA 0.56 3 31301099 31303039

Neighbor

gene id symbol gene type direction distance location
LOC120552143 NA coding downstream 45734 31233754 ~ 31238960 (-)
LOC120552642 NA coding downstream 182207 31098066 ~ 31102487 (-)
LOC120552139 NA coding downstream 478358 30797184 ~ 30806336 (-)
LOC120552744 prkag2,LOC107373612 coding downstream 685762 30579491 ~ 30598932 (-)
crygn2 crygn,LOC105025719 coding downstream 898688 30380109 ~ 30386006 (-)
G224226 NA non-coding downstream 1114 31256108 ~ 31283580 (-)
G224194 NA non-coding downstream 75903 31207908 ~ 31208791 (-)
G224158 NA non-coding downstream 112893 31162729 ~ 31171801 (-)
G224188 NA non-coding downstream 114806 31169482 ~ 31169888 (-)
G224162 NA non-coding downstream 151289 31092919 ~ 31133405 (-)
G224228 NA non-coding upstream 1001 31313315 ~ 31367136 (-)
G224248 NA non-coding upstream 2295 31314609 ~ 31316991 (-)
G224222 NA non-coding upstream 12680 31324994 ~ 31326213 (-)
G224227 NA non-coding upstream 14375 31326689 ~ 31370100 (-)
G224216 NA non-coding upstream 14709 31327023 ~ 31405155 (-)
G224195 NA other downstream 73334 31210761 ~ 31211360 (-)
LOC120552646 NA other downstream 264508 31017830 ~ 31020186 (-)
G224051 NA other downstream 603112 30632746 ~ 30681582 (-)
LOC120552614 NA other downstream 791315 30446866 ~ 30493379 (-)
LOC120552615 NA other downstream 864144 30405183 ~ 30420550 (-)
LOC120551970 LOC103372613,LOC105921230,LOC107100929,LOC101066394,LOC100709658 other upstream 18382 31330696 ~ 31337397 (-)
epb41l3a LOC100705796,LOC102304920,LOC101475436,LOC102201773,LOC108251472,LOC107100932 other upstream 148317 31460631 ~ 31511341 (-)
G224289 NA other upstream 303756 31616070 ~ 31681892 (-)

Expression


Co-expression Network