LOC120551882 (LOC104933965,LOC103370911,LOC101468576,LOC102294681)


Basic Information

Item Value
gene id LOC120551882
gene name LOC104933965,LOC103370911,LOC101468576,LOC102294681
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 21564869 ~ 21574510 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789437.1
GGTACAGTGGCGTCAGTGCTCTCTGGCGCCTCCCCAGACATGCATTTTGTACTAGTTGTCTCGCATTTTTTCACTCGTCTCTGTTTATATTTTTGACAAAGGGGCATTTTTACACGAAGTGAGGCTTCAGCGTACATCGATACAAACGCAGGAACACCTCCAACAGCAGTTTTATCCGCTGGACTCTCTTAAAGGTTGGAAACGATGGCGTCCGTGTGGCAGCAGGAGCCATCATGTTATTCCCCCTGCGTAGAGATCGACTCCAGCTCTGTCAGGTGCAAGGAACGGCTGACCTCTCCGGTCTGGCTGAAACAGGAACAAGACGACCTCCGCATCATCAAGTGGGAGACCTTTCAAACGGGAGCCTCGGCAGATGCTGTTCAGGACAACACGCCCAGCAGTGCCATGTCTGCCGCCTCACATCAGGAAAGCCTGCCCCCGCGGGTGCTGCTGACCATCACCAAGCTGCAGTGCATGCTGGAGAGCAAACAGGAGCGGATCGCTGCACTGGAGAAGCAGGTGGAGGACCTGATGCAGGACCGCAAGTTCCTGAGGAGCCAGATTGAAAACCTCACAAGTAGCCGCGCCATGCCAACCTTTGCATCACCCAGTCCAGTGACTGAAGCTCCTAAACCCAGCAAAGTGCAGCACTCGGAAAACAAATCTCGGAAGAGAGAAAAAGCTTCTTCTTGTTCCTCTgacagcagcgacagcggctcTGAGGCGTCGGAATCATCCGAAGTTTCAGCAGCCTCAAGTGAATACAGAAGGAAGAAACACCATAAGGACAAGAGAAGATCAAGGAAAGGGAAGGACTACAGCAGGAAGAGGGCCACCGGTGTCCAGTATGTCGTCCACCGCTACAAACAAGTCCTGTCGGCCTTCATCAAGAAGAAGAGCATGAGCGAAGCCTTCCGCCATCTCGGAATCGACCGGAACACCATCGCCAACACGGCCTCGATTGCCGAGCTCCATCTCGCCGGCAAAGACATGGTCCCCCTGGTGGGCATGTTCCGCCAAGGAGAAGAGACTCTGGTCAGCTACGCCAACAGGTGCACCCTGGTCATTGACAGCGACGCTGACCTGTCCAGGAAAATAGACCATATGAAAGCTAGCGGCGAGCTTCTGCCCATCGCAGGAAAAAGGCAGAGGTTGTTGCATTCTCAGATGCAACAGATGGGGGGCGCGGCAGAGAGCATTTTAATAGGTTGATGGATTTTTAATTGCATGTAGTAGGGGTGAAACGTAATGCCTTttacaaaaacaccaaaatggatttttatgttttatgtagcagtttttttcttaaattgaTTTAGTTAATTATTTTCAGAATGTGCATTTCAGGATGTATATTTTGCCATAAGCCATAAAAATGACTTACAGCTGCGGTCACTAAAGAGCAGAAGTGTGTGCTGCGTACGAAACGCCCACAAGATGGCAGTGCTCACATATTAGATCAGTTTTACAAATCACTCCTCTTGTCATTTACTCCAAAATGGTGGATTGTCAATTTCcattttccagcaccttgtttcTGTGGAGGGATAACTTTTCTGTTCATAGACattctgaaaaataattttgttgACATTATCCTGTGACTCTTATGCTGTAATTGAACCGAGCGATTTAAGAAACTGCGTTTGTTGTGTGTTAATGTTTCTGACCTGCCAAcaaatgaaaaccatgtgttCATAGAGAGATTTCAGTGAGTTATGTTGCCTTtgcttttatctttttagattattttttatttggggcttttccctttatttgatagtgccAGTGactagacaggaaaggtgggagagaggtgggggatgacacgcagcaaagggcggcaggtcggattcgaaccctggccgctgcaaaggactcctACTGGATGAGGCTAGAGGTCGCCCCGCCTTTGCTTTCACCTTGCATCACATCAACGCCAAATTATTTAACGTCTGTCTTCTGTGAGCTTAAATGGGATTGACAACAAATGAATTGCAGAATAAATGCGTATTCAATTTGC

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 106-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789437.1 True 2023 mRNA 0.48 5 21564869 21574510

Neighbor

gene id symbol gene type direction distance location
myo3a myo3a coding downstream 19419 21485222 ~ 21545450 (-)
gad2 gad2 coding downstream 80695 21464099 ~ 21484174 (-)
LOC120552736 apbb1ip coding downstream 122293 21413132 ~ 21442576 (-)
pdss1 pdss1 coding downstream 171253 21386640 ~ 21393616 (-)
acbd5a NA coding downstream 235066 21321300 ~ 21329803 (-)
anxa13 LOC107081825,LOC103456771,LOC105935762,LOC106515547,LOC103140553,LOC103370912 coding upstream 1096 21575606 ~ 21587153 (-)
LOC120552336 NA coding upstream 16434 21590944 ~ 21598756 (-)
gpr158a gpr158 coding upstream 30205 21604715 ~ 21689934 (-)
ptchd3a NA coding upstream 118921 21693431 ~ 21700043 (-)
LOC120552272 thnsl1 coding upstream 132395 21706905 ~ 21711616 (-)
G221616 NA non-coding downstream 146862 21415951 ~ 21418007 (-)
G221604 abi1 non-coding downstream 192178 21345698 ~ 21372691 (-)
G221582 NA non-coding downstream 244459 21319890 ~ 21320410 (-)
G221567 NA non-coding downstream 262822 21301484 ~ 21302047 (-)
G221551 NA non-coding downstream 294460 21269442 ~ 21270409 (-)
G221695 NA non-coding upstream 156777 21731287 ~ 21731487 (-)
G221708 arhgap21 non-coding upstream 239986 21814496 ~ 21815723 (-)
G221712 LOC104936438,LOC103366385 non-coding upstream 257646 21832156 ~ 21832884 (-)
G221768 NA non-coding upstream 369860 21944370 ~ 21944690 (-)
G221793 NA non-coding upstream 517031 22091541 ~ 22091753 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other downstream 343202 21217680 ~ 21221667 (-)
LOC120552536 fbxl7 other downstream 702181 20835178 ~ 20862688 (-)
G221048 ankh other downstream 2237975 19315591 ~ 19326894 (-)
mettl4 mettl4 other downstream 2615374 18938913 ~ 18949495 (-)
LOC120552352 colec12,LOC102798044 other downstream 2753925 18772977 ~ 18810944 (-)
tfr1b NA other upstream 415507 21990017 ~ 22011086 (-)
LOC120552473 NA other upstream 539872 22114382 ~ 22120611 (-)
smpx smpx other upstream 628257 22202767 ~ 22218381 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other upstream 1827033 23401543 ~ 23519526 (-)
avl9 avl9 other upstream 3222079 24796589 ~ 24854888 (-)

Expression


Co-expression Network