LOC120551893 (LOC103377216,LOC107591252,LOC101472906,LOC100709944)


Basic Information

Item Value
gene id LOC120551893
gene name LOC103377216,LOC107591252,LOC101472906,LOC100709944
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 16527664 ~ 16534798 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789465.1
AGCCTGTTAATACAGGCGCACTCTGCATTGAACGGATGGATAGATGGTATTTGCTTACTTTAGTCTATATGGcagaatatacatttttgtcTGAGCTTCCTGGATGATGAAACAGAAAGCCCTTGTTTCAGACGACACAATTCACCACTCAGACTGTAGAGAAACATGCGCCTCCCCTTGTTCCCTGAAGGGAGCCTGAAGAGAAAAGTGAAAACAGTCCAGAGCCAGAGCGGATCCCCAGCTGGCTGCAGGAGGAGAGCTTTAATATACGTGTCAACATGGAAGAAGTACTGGCGCCTTTAAGGGAGGCTGTGAGGGAACAGGGTGACTTGGTGCATCAGTTGAAGGAAAAGGGCGCCACCGAGCAGGAGCTGAGCAGAGCTGTTGCAGAGCTGAAAGCCCGGAAGAAGATTCTTGAAGCAAAGGAGCTAGCTTTGCAGCCCAAAGATGACACGGTGGACAGAGTGAAGATGGAGGATACCTTAAAGAGGAGATTCTTCTACGATCAGGCTTTTGCCATATATggagGTGTGAGCGGCCTGTATGATTTCGGCCCTGTGGGCTGTGCCCTGAAGAACAACATCCTGCAGGTGTGGAGGCAGCACTTCATCCAGGAGGACCAGATCCTGGAGATCGACTGCACCATGCTGACCCCTGAGCCTGTCCTCAAGACGTCTGGGCATGTGGATAAATTCGCTGACTACATGGTGAAAGATGCCAAGACTGGAGAGTGCCACCGTGCAGATCACCTCCTCAAAGGTCActtgaaaaaaatgttgtctgacGAGAAATGCTCTGCAGAGAAGGTGACCGAGATGGAGGACGTAATCACTCAGATGGACAACTACACCCAGCAAGAGCTGACCGATCTCTTTGTGAAGTACAACGTCAAGTCACCCTCCACAGGAAATGACCTCACACCTCCCATCTCATTCAACCTGATGTTCCAGACGTCCATTGGTCCAGGGGGGAACATGCCGGGCTATCTGAGGCCTGAAACAGCCCAGGGAATGTTCCTCAACTTCAAACGCTTACTGGAGTTTAACCAGGGAAAACTTCCCTTTGGTGCCGCTCAGATCGGAAACTCCTTCAGGAACGAGATCTCTCCTCGCTCTGGACTCATTCGCGTCAGGGAGTTCACCATGGCTGAGATCGAGCACTTTGTGGATCCAAATGAGAAGGTCCACCCTAAATTCTCCAGCGTGGCCGACCTGGACATCACATTATACTCCTCCAAAGCTCAGACCAGCGGCCAGTCTGCACATATCATGAGGCTGGGGGACGCTGTGGAACAGGGAGTGATCAACAATTCAGTGTTGGGCTACTTCATTGGAAGAATCTACCTTTATCTTATTAAAGTGGGGCTGTCCAAAGATAAAGTGCGCTTCCGTCAGCACATGGAGAACGAGATGGCTCACTATGCGTGCGACTGCTGGGACGCAGAGTCCAAGACCTCCTATggcTGGATTGAGATAGTGGGATGTGCTGACCGCTCCTGCTATGATCTCTCGTGTCACTCCAGAGCCACCAAGGTCCCTCTAGTGGCTGAAAAGCCACTGAAAGAACCCAAAGTAGTTAATGTTGTCCAGTTTGAGCCCAATAAGGGAGCCATAGGAACAGCCTACAAGAAAGATGCCAAGTTGGTTCTGGAGTACCTAGCTGCATGTGACGACTGCTACATCAATGATCAGGAGAAGCTTCTCAATGAAAATGGGGAGTTCAGCATCGAGACGAACGGCAGGACATTTAAACTGGCCAAAGACATGGTCAGTGTGAAGAGGTTCCAGAAAACTCTGCATGTGGAGGAGATTGTTCCCAATGTAATTGAGCCATCCTTTGGCATCGGCAGAATCATGTACTCCATCTTCGAGCACTCGTTCCGAATCCGGCAGGGGGATGAACAGAGGACGtatTTTAGCTTTCCTGCCACTGTAGCTCCATACAAATGTTCCATCCTTCCTTTGAGCCAAAACCAGGAGTTTATGCCATTTGTCCACCAGTTATCTGAGGCAATGACTAAAAACGTTGTGTCCCACAAAGTGGACGACTCTTCAGGATCCATCGGGAGGCGTTATGCCCGGTCTGATGAGATCGGGGTGGCGTTTGGCATCACCGTCGACTTCGACACGGTGAACAAGACGCCTCACACAGCCACGCTGAGGGACCGTGACTCAATGAGGCAGATCAGGGCCGAGGTCACTAGGTTGCCGGGGATGGTTCGAGATCTGGCTAACGGCACCTTGGCGTGGGCTGAGGTGGAGACAAAGTACCCCATCTTTGAAGGACAAGAGACCAGCAAGAAGGAGTAGCCAAACTGGGACTCCTCTGTACACATAGGAATCACATTGTCAATGAAGATTTTACATtttaccaaagtcatttttgaAACTGAAAGCTTAGTAGCCTTTATACTGTATTTCTAcaggaaaaaatattttctctctttGGGAGTTGTAGTTATGTGTAGGTCTGGTCACATAATGTAGATATGAAATATACATTAGTATCTGCAGATTCAAACATGTCACATAGACTGGAGGAAAGCTCAACCAGTCACAAACATGCTGGAGGGCTAAGAGTCCTCTGTGGCCTCCTTCCTCCAGCAGTAGCCTATATCACTGTCGCCTGCAACTGTCTAAACTGATACTGATCTAACTGATACTGAAAGCAGAAAACAGAGATATAGCCAggacttttaattaaaaaaaatgtaatactgcATGCCTTGGTTAAACTTTGATAATAAACCATATACTGCATAGCTCTT

Function

NR:

description
PREDICTED: glycine--tRNA ligase-like

GO: NA

KEGG:

id description
K01880 GARS, glyS1; glycyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789465.1 True 2767 mRNA 0.49 17 16527664 16534798

Neighbor

gene id symbol gene type direction distance location
hhatlb hhatl coding downstream 614 16519042 ~ 16527050 (-)
klhl40b klhl40 coding downstream 9726 16514192 ~ 16517938 (-)
sec22c sec22c coding downstream 63648 16458333 ~ 16464016 (-)
kpna1 kpna1 coding downstream 181592 16339112 ~ 16346072 (-)
mix23 ccdc58 coding downstream 193837 16328173 ~ 16333827 (-)
plcd1a NA coding upstream 66831 16601629 ~ 16621681 (-)
LOC120552381 LOC104957866 coding upstream 344697 16879495 ~ 16881724 (-)
bdh1 bdh1,LOC103373205,LOC107382809 coding upstream 415857 16950655 ~ 16965739 (-)
gyg1b gyg1 coding upstream 431847 16966645 ~ 16977681 (-)
cpb1 cpb1 coding upstream 445126 16979924 ~ 16987685 (-)
G220273 NA non-coding downstream 46506 16479383 ~ 16481158 (-)
G220272 nktr,LOC102798446 non-coding downstream 50149 16472248 ~ 16477515 (-)
G220257 NA non-coding downstream 77443 16447930 ~ 16450221 (-)
G220254 NA non-coding downstream 161051 16365204 ~ 16366613 (-)
G220243 NA non-coding downstream 188627 16337818 ~ 16339037 (-)
G220300 gars,LOC103369121 non-coding upstream 12130 16546928 ~ 16548724 (-)
G220373 NA non-coding upstream 159789 16694587 ~ 16701557 (-)
G220382 NA non-coding upstream 207489 16742287 ~ 16745412 (-)
G220443 NA non-coding upstream 352458 16887256 ~ 16888024 (-)
G220445 NA non-coding upstream 363391 16898189 ~ 16898537 (-)
drd3 drd3 other downstream 242929 16266303 ~ 16284735 (-)
G220124 NA other downstream 462443 16064670 ~ 16065221 (-)
G220117 usp12,LOC107701680,LOC107705210 other downstream 522900 16003879 ~ 16004764 (-)
si:ch211-140b10.6 polr1d other downstream 554001 15968731 ~ 15973663 (-)
mtfr1 NA other downstream 846776 15676254 ~ 15680888 (-)
LOC120552205 LOC100711537,LOC102295084,LOC108230444,LOC106948898,LOC103140410 other upstream 247274 16782072 ~ 16795124 (-)
G220412 csrnp1,LOC104937158,LOC102793366 other upstream 339851 16874649 ~ 16875300 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other upstream 1891964 18426762 ~ 18483776 (-)
G220833 NA other upstream 2075438 18610236 ~ 18697970 (-)
LOC120552352 colec12,LOC102798044 other upstream 2238179 18772977 ~ 18810944 (-)

Expression


Co-expression Network