ptchd3a


Basic Information

Item Value
gene id ptchd3a
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 21693431 ~ 21700043 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789470.1
ATGGGCTGCAGACGCACAGACTGCCTGGCAAAGCCTCTGTCAGGCCTTTTTGAAAAACTTGGATCACTTGTAGGCTCctgtccattttatttttttgtgattccTCTCATACTCTCAGCGGCGCTTGGCGGAGGCTTCACTTTTCTCAAAGACAGGGAGGACAATGACTTTGAGCGGCAGTTCACACCCAGGAAAGGACCCTCGAAGGCAACGAGAGCTTTTGTCAGGGAAAACTTCCCCTACAATGACTCCATGTTTTCAGAGGACAGGTTGTACGACAAGAGCAACTTTGCATCCGTCATTGCTGTATCGACTAACAGCTCAAATATACTTACAAATCCTGCTTTTGCGGAAATCCTCAGGCTCAACAATAAGATCCTTAATATCATTGTGCACAATGGGAGCCTGGGATTCAGTGAGTTGTGTGCAAAAGCCAACGGAGAATGTGTCTCAAACATCCTCCTGGAAATTATTAGCGCTAATGCAACCAGCATCACCTTCCCCGTACACAGGCACAGATCCAGCTCAGTGTTTCTTGGCTCTGTGCTCGGTGGGGTTATCACAGATGTCAACAGCTCAGTCATGAGTGCTCAGGCTGTAAAACTCATCTACTACTTAGATAACAAGGAAAACTCAGCTGACGCCTCAAAATTATGGCTGAGAGGATTTCAAAAACTCTTATCAGATGAGACGGACTGCAAACACATTGACGTGTCGTACTACACCTCCAAATCCAGGCAAGATGAGATTGACAGTCACACCACAGATGGCATTCCTTTATTCCTCATCACTTATGCCTGTGCTATCACTCTCTCGGTGATATCCTGCCTGAGATTGGACAATGTGAGGAACAAGGTGTGGGTGGCCGTTTTCGGCGTCTTATCCTCGGGTCTGGCTATTGTCTCATCTTTTGGCTTGCTGCTTTACATCGGAGTGCCATTCGTTATAACAGTCGCAAACTCTCCTTTCCTGATACTTGGAATAGGTCTCAACAACATGTTCATAATGGTGTCCGACTGGCAGCACACCAACGTAAAAGACCCAGTGCCGAAGCGGATGGCTCACTCTTACAAAGAAGCAATCATGTccatcaccatcaccaccctGACCGACGTCTTCAAGTTCTCCATAGGCGTCACGTCCGACTTCCCATCAGTGCAGTCGTTCTGCCTGTACACCAGCGTCTCCATCATATTTTGTTACGTATACACAATCACCTTCTTTGGAGCCTTCTTGGCTCTAAATGGGAGGCGAGAAGCCAGCAACAGGCACTGGCTGACCTGCATGAAAATACCATCAGACAATGCTGGTCATCATTCTCAGATATATAACATCTGCTGTGTGGGAGGCGACTATGATAAGAACACTggagcagagaaaaaaaaaacaataattttttttaaggattACTATGGCCCGTTTTTGATCAAACCCTGTGTCAAGGGTGTTGTAATCTTCCTTTATGTGGTATATTTAGCTACGAGTATTTATGGATGTTTCCAGGTAGGCCTACAACAGGGGATTGAGCTCTACGATCTGGCCGCTGATAACTCCCCCGTTACGAGATTCAATTTGAAGGATAGTCAGTATTTTTCTGATTACGGTCCATCTGTGATGGTTATGGTAGGTGAGGAATTCCAATACTGGAATAAAACCAAGAGACACCAACTTCAGAGATGCATAGAGGACTTTAAAAAGCTCCACTTTGTAGATGAGCATGTCTATACATCCTGGCTTGACGCTTATTTGTCATATGGACAGGAAACACATTTAAACCTGGATGATAAAGATGTTTTTCTCACAAATCTAACaacattttttgatttatttcctCTTTTCAAGCAAGATCTGAACCTAACTAGGGATGCCATATATGCATCCCGGTTCTTCGTGCAGACTGTTGATATTGCCAATGCCAGCATGGAAATTTACATGTTTACAGGTCTTAAAACCACTGCTGGCAGATGCAGTGCAGCGTCTTTATTAGTCTATAATCCGATATTCATCTTCTACGACCAGCACGCCGTAGTAGTTAAAAGCATGATTAAAAACGTTGGCGTGATCACAGCAGTGATGTTGGTTGTCTCTCTCCTGCTGATTCCAAACCCCCTCTGCTCATTATGGGTGACTTGTTCGATTGGTTCAGTGACTGCGGGGGTGACTGGTTTCATGGCGCTATGGGACATCAGTCTCGATTCAATATCCATGATCATTTTTACCATCTGCATCGGCTTCACAGTGGACTGCTCAGCTCACGTGGCTTACGCCTTCGTCTCAAGCAAGAGAACGAGTCGTGACGACAAGGTTGTGGATGCTCTCTCCAGTTTGGGCTACCCCATCCTTCAAGGAGCCCTGTCCACCATTTTAGGGGTGTCTGTGTTGGCAAGGTCTGAATTTCACACATTCAGAACATTTTTTCAAATCTTCTTTCTTGTCATGTTTATTGGCGTGCTTCACGGCCTCATTTTCATTCCAGTAATTCTGACACTATGTACCTGCAGATCAGATGGAGACGAAAGTAAAGACAAGAGTGTGAAAATCAGCAAACTCTGAACACAGTTACAGTGCTGATGGCAGGCATAAATGTGTACATTTACTTCAGATTCCATAGTAAAAACATTtgctttaaactttaaaacttGTCCATTGAATGACAACAAACATTTCTAATTCAGTGAAGCCTTTTGCCAAACTAGTTATCTCAGAACATGAACATCATAAgatgtactgtattttgaaagttatttatttttacattcatttttttttttaagattatttttttggccatttttaggcctttatttgacaggacagctgaagaaatgaaaggggagagagaggggggaatgacatgcagcaaagggccgcaggtcagagtcgaacccatgcccgctgcatcgaggagtaaccCTCTATATGTGGGCCgctgctctaccacctgagctatccgggcgcccataTGTTTATAgtcattctgttttctttttcttgatgAAAGATTGATGCATTAAGATGACTATCAGtgat

Function

NR:

description
patched domain-containing protein 3-like

GO: NA

KEGG:

id description
K24682 PTCHD; patched domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789470.1 True 3030 mRNA 0.44 4 21693431 21700043

Neighbor

gene id symbol gene type direction distance location
gpr158a gpr158 coding downstream 3497 21604715 ~ 21689934 (-)
LOC120552336 NA coding downstream 94675 21590944 ~ 21598756 (-)
anxa13 LOC107081825,LOC103456771,LOC105935762,LOC106515547,LOC103140553,LOC103370912 coding downstream 106278 21575606 ~ 21587153 (-)
LOC120551882 LOC104933965,LOC103370911,LOC101468576,LOC102294681 coding downstream 118921 21564869 ~ 21574510 (-)
myo3a myo3a coding downstream 147981 21485222 ~ 21545450 (-)
LOC120552272 thnsl1 coding upstream 6862 21706905 ~ 21711616 (-)
LOC120552274 NA coding upstream 16504 21716547 ~ 21719505 (-)
tmtopsb LOC100702425,LOC101487167,LOC102300731,LOC104945569,LOC102206266,LOC103366381 coding upstream 176121 21876164 ~ 21917655 (-)
tnk2a LOC103363574 coding upstream 253602 21953645 ~ 21991347 (-)
LOC120551932 klhl34 coding upstream 495193 22195236 ~ 22200046 (-)
G221616 NA non-coding downstream 275424 21415951 ~ 21418007 (-)
G221604 abi1 non-coding downstream 320740 21345698 ~ 21372691 (-)
G221582 NA non-coding downstream 373021 21319890 ~ 21320410 (-)
G221567 NA non-coding downstream 391384 21301484 ~ 21302047 (-)
G221551 NA non-coding downstream 423022 21269442 ~ 21270409 (-)
G221695 NA non-coding upstream 31244 21731287 ~ 21731487 (-)
G221708 arhgap21 non-coding upstream 114453 21814496 ~ 21815723 (-)
G221712 LOC104936438,LOC103366385 non-coding upstream 132113 21832156 ~ 21832884 (-)
G221768 NA non-coding upstream 244327 21944370 ~ 21944690 (-)
G221793 NA non-coding upstream 391498 22091541 ~ 22091753 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other downstream 471764 21217680 ~ 21221667 (-)
LOC120552536 fbxl7 other downstream 830743 20835178 ~ 20862688 (-)
G221048 ankh other downstream 2366537 19315591 ~ 19326894 (-)
mettl4 mettl4 other downstream 2743936 18938913 ~ 18949495 (-)
LOC120552352 colec12,LOC102798044 other downstream 2882487 18772977 ~ 18810944 (-)
tfr1b NA other upstream 289974 21990017 ~ 22011086 (-)
LOC120552473 NA other upstream 414339 22114382 ~ 22120611 (-)
smpx smpx other upstream 502724 22202767 ~ 22218381 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other upstream 1701500 23401543 ~ 23519526 (-)
avl9 avl9 other upstream 3096546 24796589 ~ 24854888 (-)

Expression


Co-expression Network