LOC120551939


Basic Information

Item Value
gene id LOC120551939
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 1321438 ~ 1332410 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789537.1
cacacacacacacacacactcctgtagTACTTCCTTCCCCTAGCTGGCTGACTTATCTGTCAGACAGTCCGGCCTAGACAACAAGCCGAAGCTTTTCTGCTGGCTGGGCGATTTTCCCGCTAACATTTGAGATGGAGATGGAATCCACAACATATGATTATGACGACGGCAATGAATCGTCCACATCAATCCCACCATGTATTTTTGACGGTGTCAACTATCTGGGAGCTCAGCTATCCATCCTCTTTTACTTTATGTTTGCCTTCAGTCTCTTTGGCAATGGGCTGGTCCTGGTCATCATCCATCGGTTTGAGAAGCTGACCACTGTGACCAACATCTTGCTGCTGAACCTGGTGGTGTCCTCCCTGATCTTCATGAGCAGCCTTCCCTTCTTGGGAGTCTACTCGCAGCTCTCCTACTGGATCTTCGGCAAGTTCATGTGCAAGATTGTTGGCACCGTCTACTATCTGGGCTTCTACAGTTCTGTCCTCTTTCTAACTCTTTTGACCTTCGACAGACACCTTGCAGTTGTGTACTCCTTGGGCGCACCGCAAATCAGGAGTCAAAGATATGCGGTATTGTCCTGCGCTGTAGTGTGGCTTGTCAGCGGCCTGGCGTGCATCAGGCCGATGATTCTCCACACCACTTTCACACATATGGAAAACATGACATACTGTCAGGACTTTCCTGGTGACCTAacgtttttaaatgtaaagctgCTGAGAAGATCTGGTTTTTACCTTCAGCTTATCCTTTTCTTGATCATTCCTCTGGCTGTTATTATCTACTGCTACGTTAGGATTGCTATCACTGTCATGTCATCCAGGATAGTTGCCAAGTTCAAGACAGTCAGgttaatatttttcattgtCCTGATGTTTTTTATGTGCTGGACCCCATTCAACATTGTATTGCTAATGCAGGAAAATACCTCAGAAAACTGTGAGGAAACGAAGAAATTGGCTTATGCTCTTCACGTCACTCGTGTCTTTGCCTACATTTACTTTTGCATCAGTCCAATCTTCTACACATTTGTTGGAAAAAAGTTCCAGAACTATTTCAGACAGATGCTGGTGAAATGTTTTCCGGGGTTAAAAAAGCATGTTTCGGTCAGTCAACAAAGCAGAACCAATATGTCTACAAGAAGTACACCCAATGACTTGTAAGAATGGCCTGCCATGTGTTCAACAAACAAATGAAGTGCTGTTAGTGTTGTTTTTGGATTGTCAAGGTTTAGGGTAATGAAATACATAAGTAGTGATTTAGTCTTGCCTATTAAATCTGAAATAACAGATTTTTGTGTTCCATCCTATTGAGAAACAAATATGTGCTTGTATAACAATTTCTCAGGGACATACTGATTAATATTTTCTTAGCAGTGTTGCTTATTTCACCGTTCTCAAGCTGTTGACATGTTTTGAAAGTTAGTCGTCAAAGTCTTTTCCAAATTGAACCTCCTGTCACCTctttaaagggcaactattatatagcatttataGCTTAATACTTGCATTTTGtatttgtactagaacatgttttcatgcctcaatgttcaaaaacactttatctttctcatactgcccatggctgctgcacctgtcttcaccctctgtctgagatGCTCACTGTTGTTTCACTAGTAGCAGCTAGAGCTACTGCAACAGAGCATATAGCAGGACTGTTCTGTGAAAAATCTtgaataaaggcttctaaaccaaatactacacaaccggacatgtcccagcagtaatgTTACccaaaattggggagaaattaccaacattatactttatatatatatatagattacgAAGTTTTGGCcatgttttatataaaaatcgaacattataacattgtagaaaAGCATAATTTGTCCCCTTTGAACAACCCATGTTAATGTAGACTAGATAGGCAAGTTTAGCTGAGCTGTTGGAAAAGATGGTTCCctacagaaaaacacaacactCTTTTTGCCTTTCTTTTTGACTTCTTTTTTGTCTCACGAGTGTGGGTTGTTGTTGGTGTAAGAACTAACTAGAGTTACAATATAGCAGCATTAACTGTGGCCAACTGACTCTGTTAGTCTGACAGTAGAGTATCTCATAGAAAATCCATATATAGTGCGCTTCTCTAGAACCATGAATCAAGTGTGTACACTCACTGTCCAGTCATTTTCCACATGGCTGGCTTGTGACtatttgtttgattttgtccatgtagTGTCTTATGTGAAAAATGTTCTTTATAAAATTGattttaaataatgtaaaaagaCAGTTGAttatgaagtattgtggtgatTGATTTATTGTCCAAGTTTTATAAGAAGCACATTAAGATGAGAGCTGCACCAAAAAAGGGAGGTAAACGCTTCATGATTGGTTGGTTTTTGATTGAGTCGGCTCTTGCAAATTGTAAATATAAGCTGCTTGATTAAATCAAACCTTTGAATCAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004950 chemokine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789537.1 True 2455 mRNA 0.40 3 1321438 1332410

Neighbor

gene id symbol gene type direction distance location
LOC120551945 NA coding downstream 121228 1198609 ~ 1200210 (-)
vstm2a vstm2a coding downstream 919612 294311 ~ 401826 (-)
ift74 ift74 coding upstream 175326 1507736 ~ 1536190 (-)
kcnh2b kcnh2,LOC102205662,LOC101467662 coding upstream 490633 1823043 ~ 2201660 (-)
zeb1b zeb1,LOC102790219 coding upstream 1469156 2801566 ~ 2860283 (-)
map3k8 map3k8 coding upstream 1880147 3212557 ~ 3220234 (-)
trnag-ucc_41 NA coding upstream 1977089 3309499 ~ 3309570 (-)
G217267 NA non-coding downstream 456638 864570 ~ 864800 (-)
G217259 NA non-coding downstream 535865 785271 ~ 785573 (-)
G217247 NA non-coding downstream 627014 693504 ~ 694424 (-)
G217241 NA non-coding downstream 738505 582699 ~ 582933 (-)
G217240 NA non-coding downstream 743891 566666 ~ 577547 (-)
G217330 NA non-coding upstream 21815 1354225 ~ 1354503 (-)
G217421 NA non-coding upstream 501803 1834213 ~ 1887417 (-)
LOC120552172 LOC106511981,LOC106522237,LOC106533251 non-coding upstream 584798 1917208 ~ 1918027 (-)
LOC120552173 NA non-coding upstream 736955 2069365 ~ 2070418 (-)
G217435 NA non-coding upstream 840890 2173300 ~ 2173556 (-)
si:dkey-225n22.4 LOC104949920,LOC103365391 other upstream 22847 1355257 ~ 1448275 (-)
LOC120552169 LOC102294047,LOC102205018 other upstream 325762 1658172 ~ 1811130 (-)
scospondin sspo,LOC104950179 other upstream 882301 2214711 ~ 2419065 (-)
svila svil other upstream 1656516 2988926 ~ 3136214 (-)
LOC120552696 NA other upstream 1983008 3315418 ~ 3343705 (-)

Expression


Co-expression Network