LOC120551947


Basic Information

Item Value
gene id LOC120551947
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 4881288 ~ 4888711 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789543.1
TTCATCTGACTGTCGAAGCAGCTGTTAGTCTGAAGTCACACATTAAGATGAACTGAGAGCAAACAAGATGGACAAAGTTCTGCTGCTCATCATGGCTGCATCAGGGCTGAGTGCTGTCTCATCACAAGCTGGACGGCAgtactattttttttatgagcCGCAGAACGTGACTGAAGCAAAAACTTACTGCAGAGAGAAATACACAGACCTGGCCACTGTAGACAGCATGGAGGATGTAAAGACCCTGAACAAAATGGCAGATTCAAGCAACATGGTCTACCCAGGATACCCAACATACTACAACTATCGAGCATGGATAGGACTGTATGATGACGTGAACAGCTGGCGGTGGTCACTGACGAACACAAGTTTCTACAAACCCGGGGAGACGGAGTTCAGACGATGGCGGAATGGGGAACCGAATAATATGTTCAGTAAAGAACACTGCACACAGATGGGTGTTGATGGGAAATGGAACGACGCCAGTTGTGACAGCTCCATGAAGGCAGTCTGTGTACAGGTCAGAGGGCCAGATGTGACTTTTATCCTCACTAACATCTCCATGTCGTGGCCTGCGGCCCAGAACTACTGCAGAACACAGTACACAGACCTGGCCAGTGTGAGAAACAGCACAGAGAACCAGAAGGTGCAGGACCTGATACCTACTGGAGGAGCAGTCTGGATCGGCCTTTTCAGAGACTCCTGGAAGTGGTCGGATGGAAGTACTTCCTCATTCAAGTACTGGAACACTGGGTACCCCAACAACAAAGCTGGGAACGAGGCTTGTGTGGCTGCAGCTTTCAATCAATCTGGACAATGGGAAGACTGGAACTGTGGCGTCAAGAGAGCATTCATTTGCTTCGGTCCAGTGCCTGCTTCAAAGGATGTGATAAGACTGAGTTTGGAGAAGAAGAACTCCCTGGATCTGAACAGCCCTGCTGTGATGGAGGCCATGTTGAAGCAGCTCCAACAGAAGCTGAAGGCCCGGGGGCTGGACGGCAACATCAAACTGAGCTGGAGGAAGCAGGCCGATGGAAAAGTCTTCcacaggaagaagaagaaggatgagCTGGAATGATCGCTGCGctgttttcatcagagaaaaGTGTGTTTCTTTCCTTAGAGTGCTAACGGGCTAGAATAGAGATGTGACAATCAGCTGATTAACCCATAAGCCCACTTCCAGCTTCTCAATAATGAAGTTTTGATTCTTTTCTTCGTCATGTATGATCATTAACTTAATATCTCTGGGCTGTAGACTGTTGGATGATTGAAACAAGACTTTTGAATATATCTGCTTTGGCTGCGGGTAAATATAACAGACATGTTTCACtagtttctgacattttgtagaaCAGATACGTTAAGATTAGAAAAGATTTTGCAGCAGAACCATGCACTATTTATTTACAGTTAAATCACTCGCTCCACGGACCCAAGGAAGTGCATTTACAAGTGTGAAGTTGTTTGATAGCGCGGTTCTCCAGATTGCTGCAAGCAGCAACACCGGAGGCCATAGACGCGTTTAatacgggcactgcactagtgcTTCTTCAACACAAGTCCAGTTACATAAATAACGTCAAGGAGTCTGATATCACATTCAAATCATCCTGTGTTTGCATAGAAAGTCAAACCAGCGGCGGAGGAAGTATTTACATCCTGTAGTAGAAATGAACTGGTTTCTAAACAAGGTTCAATGCATCGCTTCTCTTTGTTAGaggtgaatgttttttttgtacatggTCCCTGATATTGTAATGCAACAAACTAAAGTAAATGTACCAATcccaaagtaaagtaaaagtcctgcaatgTAACTGTAATAAAGGtatttaaagtggccatattatgctcattttcaggttcataattgtaattggagattgtatcagaataggtttacatggtttaat

Function

GO:

id name namespace
GO:0005507 copper ion binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789543.1 True 1916 mRNA 0.45 7 4881288 4888711

Neighbor

gene id symbol gene type direction distance location
trnas-acu_1 NA coding upstream 23176 4858027 ~ 4858112 (+)
trnas-gcu_48 NA coding upstream 29878 4851324 ~ 4851410 (+)
trnas-gcu_47 NA coding upstream 30692 4850513 ~ 4850596 (+)
trnas-gcu_46 NA coding upstream 37171 4844032 ~ 4844117 (+)
trnas-gcu_45 NA coding upstream 38578 4842631 ~ 4842710 (+)
LOC120552695 NA coding downstream 646936 5535647 ~ 5555611 (+)
trnas-gcu_52 NA coding downstream 681294 5570005 ~ 5570086 (+)
trnas-gcu_53 NA coding downstream 683341 5572052 ~ 5572133 (+)
trnas-gcu_54 NA coding downstream 684351 5573062 ~ 5573143 (+)
trnas-gcu_55 NA coding downstream 687410 5576121 ~ 5576202 (+)
G217964 NA non-coding upstream 119038 4759620 ~ 4762250 (+)
G217969 NA non-coding upstream 225814 4655265 ~ 4655474 (+)
G217956 NA non-coding upstream 357392 4523594 ~ 4523896 (+)
G217927 NA non-coding upstream 444553 4436423 ~ 4436735 (+)
G217925 NA non-coding upstream 477919 4403049 ~ 4403369 (+)
G218012 NA non-coding downstream 67362 4956073 ~ 4956401 (+)
G218023 NA non-coding downstream 313876 5202587 ~ 5202896 (+)
G218025 NA non-coding downstream 345079 5233790 ~ 5234090 (+)
G218026 NA non-coding downstream 358584 5247295 ~ 5247686 (+)
G218031 NA non-coding downstream 533263 5421974 ~ 5422348 (+)
trdmt1 LOC104946219,LOC101070638 other upstream 358582 4511713 ~ 4522706 (+)
ppp1r17 NA other upstream 619690 4256048 ~ 4261598 (+)
chchd7 chchd7,LOC102799933 other upstream 1176913 3670420 ~ 3704375 (+)
G217723 cnn3 other upstream 1337503 3495450 ~ 3543785 (+)
LOC120552392 mtpap other upstream 1647466 3220615 ~ 3233822 (+)
LOC120552660 NA other downstream 2471895 7360606 ~ 7373347 (+)
LOC120552265 LOC101478037,LOC102216221,LOC100695799 other downstream 3634588 8523299 ~ 8596356 (+)
G218441 LOC101478037,LOC102216221,LOC100695799 other downstream 3662072 8550783 ~ 8606578 (+)
G218445 NA other downstream 3667505 8556216 ~ 8557253 (+)
rnpc3 NA other downstream 4323207 9211918 ~ 9230163 (+)

Expression


Co-expression Network