sh3glb1a (sh3glb1,LOC104955778,LOC107097676,LOC105935324,LOC107382675)


Basic Information

Item Value
gene id sh3glb1a
gene name sh3glb1,LOC104955778,LOC107097676,LOC105935324,LOC107382675
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 9747902 ~ 9762135 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789548.1
TTTTGCTCACAGCTGTCAGTATCGGACTCGGGTGGAGACGCGAACTATCTTGTCCTGCATACTATCTTTGTCAGGATCAACAGCTGGGTGGAACTTCGACAAAAAGTTGCTTCAATGACATTTTATATAGGGATGGCAGCTTGACTGTGAGACAAGCAAGCTGTTGTATTAAGTGTTTATTTCCCCCGCGGTGTCATGGATTTTAATGTTAAGCGGTTAGCTGCAGATGCGGGTACTTTCCTGAGCCGCGCTGTGCAAtttacagAAGAGAAACTTGGCCAGGCTGAAAAGACAGAGTTGGATGCCCATTTGGAGAACCTGTTGGTCAGAGCTGAGAACACCAAGCAATGGACAGAAAGGATTATGAAGCAGACCGAAGTCTTACTACAGCCCAACCCAAATGTCCGGCTAGAAGAGTTTGTGTACGAGAAGCTGGAGAAAAAAGCCCCTACGCGAATGAACAACCATGAGCTGCTGGGCCAGTCCATGATCGAGTCAGGAAGTGAATTTGGTCCTGGGACTGCCTACGGAAATGCTTTGATAAAATGTGGTGAGACGGAGAAGCAGATTGGTGGGGCCGAACGGGAGTTAATCCACAGTGCTGCCATCAACTTCCTGACACCTTTCCGGAACTTCCTTGAGGGCGACTTCAAAACCATCCTGAAAGAAAGGAAGCTGCTGCAGGTCAAACGTTTGGATTTGGATGCAGCCAAAACCAGGCTAAAGAAAGCCAGGATGACTGATGCTAGAGCTGCaGCGGAGCAGGAGTTGAGGATGACCCAGAGCGAGTTTGACCGGCAGGCAGAGATCACCCGCCTGCTGCTAGAAGGCGTCAGCAGCACCCACGCACACCACCTACGCTGTTTGAATGACTTTGTGGAGGCCCAGGCTACATACTACGCACAGTGTTACCAGTACATGGTGGATCTCCAAAAGCAGCTGGGCAGTTTCCCCTCGTCattctccaacaacaaccagTCGTTGGTGTCGAGCGGAGCCAGCAGCATCTCCGTGCCCACCATCCCGGTGTCGGCCTCCCTGCCCAGTGTGTCTGCGGGCCACGGCAGCTCGACGGCATCGGGCGGGTTCAGTGAATTGCGTAGCTCCAACGGCAGCCGCAAAGCCCGAGTGCTTTACGACTACGATGCCGCCAGCAGCAGCGAGCTTTCCCTGCTGGCTGATGAGGTGATCACAGTGAGCAGCGTCCCTGGCATGGACTCAGACTGGCTGATGGGCGAGCGAGGCAACCAGAAGGGCAAAGTGCCCATCACTTACCTGGAGCTGCTTAACTGAGGCCCACAACCCCCCTTTTCCAGCCCTCTGTAACCAGCTGTGATGTCATATTTATATTGTGTTGCAGGGACAGGCCTCACTTCCTCTTCCATTCAGTCATTTTAGAATGAGttatatttcaatgaaaaaggAGTCTCAGTTTTCACAGACTTGAGCCGGAATGAATAAATCTGAGTGATAGGAAAGGAAAATGGACCACAATCCCTAACACGTTTGTATGCAACTGCAGTACATTTCTAAAACCTGCTTCCATGCCTTTGTCTTTGATGCCATGCAATCTGCAACACGTGCCAGAACATCTCCCAAActgtaacttaaaaaaaagaaaagtttttgTTTACAATAGATGGTGACCTTAAATGCTTTTAATGTGAGGGTTTTATTTCTCtaatctgtttttttctctaatCTACAGTGATActgtagaaaaagaaaagaaaatgcactTCAGTTTGAGGTGGAGAGTAATGCTGATCTTtaagtcttttaaaaaaaatttttttattgataatCTTATTGTGCAGTAGCTGTTATGGTTATCCAAAATATTTTACCATTATCGTAAGTATTGCGTGTCAGCTTTATTCACATGAGCCATACTGGACAGCGAGTTAAACACATTGTTCCAGTACATCTGATTGATAAGCAGTTGCAAAACATACATGCCAAATGATGTTAAGTGCCTATCGCAGTGAATAGACCTTTCTGAAAccatttgcctttttttttttt

Function

symbol description
sh3glb1 Enables protein homodimerization activity. Involved in several processes, including cellular response to starvation; positive regulation of cellular component organization; and protein localization to vacuolar membrane. Located in autophagosome membrane; cytosol; and midbody. Part of protein-containing complex.

NR:

description
endophilin-B1-like

GO: NA

KEGG:

id description
K11248 SH3GLB1; endophilin-B1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789548.1 True 2025 mRNA 0.47 9 9747902 9762135

Neighbor

gene id symbol gene type direction distance location
LOC120552675 LOC103356150,LOC104955777,LOC102780560 coding upstream 2448 9737279 ~ 9745454 (+)
ntng1a ntng1,LOC102781425 coding upstream 156725 9476783 ~ 9591177 (+)
prmt6 prmt6 coding upstream 284859 9460305 ~ 9463043 (+)
abca4a LOC100710805,LOC102195251 coding upstream 791362 8913264 ~ 8956540 (+)
arhgap29a LOC103374575,LOC104943220 coding upstream 835004 8873610 ~ 8912898 (+)
fam168b fam168b,LOC103356147 coding downstream 28177 9790312 ~ 9796422 (+)
rbbp8 NA coding downstream 35046 9797181 ~ 9805437 (+)
nsmaf nsmaf coding downstream 52671 9814806 ~ 9833063 (+)
trnac-gca_34 NA coding downstream 470351 10232486 ~ 10232557 (+)
zmp:0000000991 NA coding downstream 639029 10401164 ~ 10415362 (+)
G218710 NA non-coding upstream 196 9747345 ~ 9747706 (+)
G218709 NA non-coding upstream 629 9747029 ~ 9747273 (+)
G218690 NA non-coding upstream 82224 9614840 ~ 9665678 (+)
G218693 NA non-coding upstream 411363 9336332 ~ 9336539 (+)
LOC120551942 NA non-coding upstream 455249 9260442 ~ 9292653 (+)
G218724 NA non-coding downstream 50084 9812219 ~ 9813878 (+)
G218727 NA non-coding downstream 80184 9842319 ~ 9842709 (+)
G218728 NA non-coding downstream 82819 9844954 ~ 9848196 (+)
G218796 NA non-coding downstream 202299 9964434 ~ 9964804 (+)
G218831 NA non-coding downstream 567120 10329255 ~ 10329525 (+)
G218695 NA other upstream 289202 9458183 ~ 9458700 (+)
G218694 LOC106675555,LOC106675866,LOC106674541,LOC106099046 other upstream 369755 9376944 ~ 9378147 (+)
rnpc3 NA other upstream 517739 9211918 ~ 9230163 (+)
G218441 LOC101478037,LOC102216221,LOC100695799 other upstream 1141324 8550783 ~ 8606578 (+)
G218848 LOC103365363 other downstream 660451 10422586 ~ 10423249 (+)
G218875 pabpn1 other downstream 726132 10488267 ~ 10494988 (+)
dcaf11 dcaf11 other downstream 754315 10516450 ~ 10526204 (+)
ipo4 ipo4,LOC102785023 other downstream 941003 10703138 ~ 10719314 (+)
zgc:101569 LOC102309791,LOC106455900,LOC102784166,LOC100695384,LOC101475816,LOC106931939 other downstream 1007240 10769375 ~ 10815975 (+)

Expression


Co-expression Network