arl8 (arl5b,LOC103373092,LOC100708858,LOC106590131)


Basic Information

Item Value
gene id arl8
gene name arl5b,LOC103373092,LOC100708858,LOC106590131
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 18640257 ~ 18648625 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789648.1
TTTTCAGCGAACCACTGCCAGCAGCCAACGGGCAGAAGAAGACGTGCGAGCAGAGTTAACACAGTGCCGCACTTAACACCCAGTGTTTATACGGTTTGTGGAGGATTAAACGTTAACCTGAGCCGCTCGATGATAATTTACCATATCTGTGTTACCGTACACCATTGCATTCCCGCGTTAGCTGCGTTTTAGTTGTAACCGGAGCGCATGGAGTCCGCATTCAAAAGGTCGGTGAGGTGTTTTGCGGACAAGAGACCAtccagctaatgttagctagccaCGGATTGTACTGTGTGGATTTCAGAGTGGAAAAGCTCAGTGCTGCTGCCCACTCTACTgacggacggacagacagacatcaACCTAAACAATGGGCCTCATATTTGCCAAACTGTGGAGCTTCTTCTGTAACCAAGagcaCAAGGTGATAATCGTCGGACTAGATAATGCAGGGAAAACCACCATCCTCTACCAGTTTCTGATGAATGAGGTCGTCCACACGTCACCCACCATCGGAAGCAACGTGGAAGAAATAGTGGTGAAGAACACTCACTTTCTGATGTGGGATATAGGAGGGCAGGAGTCTCTCAGGTCCTCATGGAACACCTACTACTCCAATACAGAGTTCATCATTCTGGTGGTGGAcagcacagacagagagaggctgGCCATCTCTAAAGAGGAGCTCTACAGGATGTTGGCTCATGAGGACCTGCGGAAAGCAGCTGTGTTGATATTTGCCAATAAGCAGGATATGAAGGACTGTATGTCTGCAGCAGAGATCTCCAAATACCTCACCCTGAGCTCCATCAAAGACCACCCCTGGCACATACAGTCCTGCTGTGCACTTACAGGAGAGGGTTTATGCCAAGGCCTTGAGTGGATGACCTCGAGGGCTGGACTCAGATAGCCCCTCCCTCAGCCGCCGATGGTCTGACTACCTGCACCACCCACACGGTGGCAACAATCCTTACTGGCTTAttgttactttttatttttttaatgacaaaCTTGGACTTCGACCTCTGGAGACGGCACAAGACGGAGGGGCATGGACACCTTCCACAGCTTAATTGTTACAGTGGAAACTGGTGTCTCTCCCAGTGGATGGTAACGTGACCAGAACTGATGAACCCATCTGGTTATCTAGAACGAGACTTTGACAGtaaaggaggagaagaggatcATTTCACTAAGTTAAGAGTATGTCCAAGTGCAAAGCAGGGCTGCACTGGACATGATTTACACTACATACATATCATGTTACGTCACACCATATCATATCAAGAGAATGCCATAGACATCATGTTGGTGCatctctattattattattagtattattattattattattattattattattattattattattattattattattttcctctATATAAGTTTGATCATGTTCAGGTAAAAATTGACAGGACAAACAAAGGGATTACAAGCAGTATTGTAAAACCAGTTGTGAATGGTGGTACTAGGCAGTGTTTCAGttctcatgtttgtttttttcgttttcatttttagcACAGGCATACCACACATGATTTCAGTTTCATAAGCTACATTGTTGGTGGTTATTCTCACACTACAGCCTGTTGGAGCGGTATCGAAATGTGGTAAAATATGAATCTCCCTTCTTTATTAACTTTGAACCTGTACTTCAGAGTTTTGGCATGCAAACGTTTTCTAAAAACGGACCCTTACTTTAGCCATTTAACTAATTTTGCAAGGCATTGAATGGCTGaaacattattatttaaaatgcaAGTTGCTCCGTTTTAATAACAgtattttaaatgtatacaCTATGTTTTGTCAATGATGCATTATGATTGTTTGCTTTTATAGGGAGTGCAGGTTTGCTCATGGCGAGTTAGCATCTAGACCCGTTTTGTATTAACAGATGATCACTGGTGCTCTGCAGGTGTATGTGACTGATCCACTGCATCCTTAACATATGTCTTTAATTTTCTGCAGCCATTTTGGCACATATTCCACTTTAaacattttgtactttttaaacaAAGGGATCAGAATAAGCCACCATCAAAAAGATGCCACACATCTATGGGGAAGTTGTTACTCGTCATCAACCATCCTGGACTTGAAGGTTCAGGGGTTTAGTAGCATTAAGATGATCTTTACTTAATATTTTGGCCATCATATAGTTACAATAATTGAACCTCGGCCTTAATTATGTTGTGAGTGTCTGGAGGACCGTGTATGAATTTGTTTGcccataattttttttttttttttttttttttacccttgtTTTATTCTTTACCCAGTATAAGAATTCCTTGAACTTGGTAACAGATCTATGCATGTGTCACTTTGAAACCATGTCTACCTTTTGCAAGTTCCACAGTGGCCAAAAAGGAGGAGGTGCATGAGTTTCATCGAATCAAAACCGTGACATCTTGGTCAGGAGGTGGCTCTGGATCTCTAGAGTATAGTTTGTTGTGGGACAAGGTATTTTTACACTAAGAGGGAAAAGGGTGAACTGTGCAGCCCCCAGACTCTTTGCAGCATTAAGGTTTGCAGCTTTTGCTTTGATCTCACAAAGCAAGGGAACTGATCTTGTACTGTCAGTGTGGTGGTGTCCAGTCTGGGTCATGTACTgtatttcagttttcttttCAATAAAGGTTTGTTTTTAACTTTGA
>XM_039789649.1
TTTTTTCAGCGAACCACTGCCAGCAGCCAACGGGCAGAAGAAGACGTGCGAGCAGAGTTAACACAGTGCCGCACTTAACACCCAGTGTTTATACGGTTTGTGGAGGATTAAACGTTAACCTGAGCCGCTCGATGATAATTTACCATATCTGTGTTACCGTACACCATTGCATTCCCGCGTTAGCTGCGTTTTAGTTGTAACCGGAGCGCATGGAGTCCGCATTCAAAAGGTCGGTGAGGTGTTTTGCGGACAAGAGACCAtccagctaatgttagctagccaCGGATTGTACTGTGTGGATTTCAGAGTGGAAAAGCTCAGTGCTGCTGCCCACTCTACTgacggacggacagacagacatcaACCTAAACAATGGGCCTCATATTTGCCAAACTGTGGAGCTTCTTCTGTAACCAAGagcaCAAGGTGATAATCGTCGGACTAGATAATGCAGGGAAAACCACCATCCTCTACCAGTTTCTGATGAATGAGGTCGTCCACACGTCACCCACCATCGGAAGCAACGTGGAAGAAATAGTGGTGAAGAACACTCACTTTCTGATGTGGGATATAGGAGGGCAGGAGTCTCTCAGGTCCTCATGGAACACCTACTACTCCAATACAGAGAACGTGGCAGCTGGTGTGTTTGTTCAGAGCACAGACGGCAGCAGGGGCCGCCCAAGTCAGAGGTCACCCTTTCATAAAGGGGCCTATCTGAAAAGCAAAGCGAGGGTCAGCCTCCGCATTGTTTTAgagaaaggagaagaagaacagcAGAGTTATGGCAGAGGCGCAGATGTGTGTTGAAGAGAGGTCTCTACAGAACCACACGGATTAAACTTTCCTGATGTAGCATCTGCCATGACATG

Function

symbol description
arl5b Predicted to enable GTP binding activity. Involved in protein localization to Golgi membrane. Predicted to be active in trans-Golgi network.

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 5B isoform X2

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07950 ARL5B; ADP-ribosylation factor-like protein 5B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789648.1 True 2681 mRNA 0.42 6 18640257 18648623
XM_039789649.1 False 869 mRNA 0.49 4 18645444 18648625

Neighbor

gene id symbol gene type direction distance location
trnar-ccg_3 NA coding downstream 15459 18624726 ~ 18624798 (-)
chmp4c chmp4c,LOC107086476,LOC106961905 coding downstream 19293 18617665 ~ 18620964 (-)
LOC120552023 LOC103373088 coding downstream 22858 18613150 ~ 18617399 (-)
esyt2b esyt2 coding downstream 232332 18374720 ~ 18407925 (-)
ncapg2 ncapg2 coding downstream 266231 18359504 ~ 18374026 (-)
cacnb2a cacnb2 coding upstream 10652 18659277 ~ 18728599 (-)
LOC120551919 slc39a12 coding upstream 82899 18731524 ~ 18740086 (-)
mrc1a mrc1 coding upstream 93374 18741999 ~ 18754600 (-)
LOC120551921 tmem236,LOC104961611,LOC102297878 coding upstream 107728 18756353 ~ 18762846 (-)
enosf1 enosf1 coding upstream 173357 18821982 ~ 18826882 (-)
G220839 zfand1 non-coding downstream 16872 18622691 ~ 18623385 (-)
LOC120552692 NA non-coding downstream 62180 18472125 ~ 18578077 (-)
G220732 dnajb6 non-coding downstream 425868 18207365 ~ 18214389 (-)
G220742 dnajb6 non-coding downstream 438739 18188724 ~ 18201518 (-)
G220695 NA non-coding downstream 537101 18066795 ~ 18103156 (-)
G220860 NA non-coding upstream 91792 18740417 ~ 18740616 (-)
G220888 NA non-coding upstream 167281 18815906 ~ 18816378 (-)
G220893 NA non-coding upstream 181126 18829751 ~ 18829985 (-)
G220972 NA non-coding upstream 391640 19040265 ~ 19043216 (-)
LOC120552156 NA non-coding upstream 668029 19316654 ~ 19317227 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other downstream 156481 18426762 ~ 18483776 (-)
G220412 csrnp1,LOC104937158,LOC102793366 other downstream 1764957 16874649 ~ 16875300 (-)
LOC120552205 LOC100711537,LOC102295084,LOC108230444,LOC106948898,LOC103140410 other downstream 1845133 16782072 ~ 16795124 (-)
drd3 drd3 other downstream 2355522 16266303 ~ 16284735 (-)
G220124 NA other downstream 2575036 16064670 ~ 16065221 (-)
LOC120552352 colec12,LOC102798044 other upstream 124352 18772977 ~ 18810944 (-)
mettl4 mettl4 other upstream 290288 18938913 ~ 18949495 (-)
G221048 ankh other upstream 666966 19315591 ~ 19326894 (-)
LOC120552536 fbxl7 other upstream 2186553 20835178 ~ 20862688 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other upstream 2569055 21217680 ~ 21221667 (-)

Expression


Co-expression Network