sec22c (sec22c)


Basic Information

Item Value
gene id sec22c
gene name sec22c
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 16458333 ~ 16464016 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789654.1
GATTTGTTGTGGTTTTGTTGTATCCGGAAGAAGATTTCAAGTTAGCTCGTTGGCTAATTTAAATATAACTTCTTATGTATATGTTATAACAGGTTATGCAGGTTCTCTATATAATCGCTAGTAATATGAAGTATGTGATTGTACTCGTAACGCGCATCTAAAGCTGGTGCTGGCtacatgctagctagctagtggtgTATTTCCTTCAACTTATATGATGGTGTAGTCAGCTAACCTCCATTAGCTAAGTAAGGTGCAGCATGAAACCTATGATAATGAGGCAGTGTGTTCTCCATGGACCTAGTGGATCATGTCTCTGATCCTGTTTGCCTTTGTGGTTCGGGTCAGGGATGGACTCCCCCTGTCGGCCTCCACAGATTTTGAACACAACCGAGAGCTCCAGGAGAGGAAGCAGCAGCTCAGGACCGTCAGCAAGGCACTGGCCTGTTTCCCTGGCAGAGGGACCATCAAGGGCCAGGAGCTCAACATTTACTTCGTCTCTTCAGAGGGTGTATCCTACATGACCGTGTGCCACTGCAGCCTCCCTGTTGCTAAGGCCTTCTGCTTCCTGGAAGATCTGCGCTGGGAGTTCACAGCATGCTTCAATAGCACTGTTGTTACCTTGGCAGCCAGGCCATATCCATTTTTGGAATTTGACAGCACCATTCAGAAGCTGAAGCAGCAGTACAACCAGAGCGGTGGTCCGGCCCTGGAGGTGACATTGGCAGAGGTCCAGGAGGATCTGAGGATCCATCCACCCAAAATAATTAACTTAGAGGAAGTGGAGCTCACCAACGGCATTGCAAATGGACACATGGAGCAAAGCACTGGATCTGGTCAGAATGTAAGACTGGAACCAGTGACAGCGCCAGGCATCCTCTCTCTGGTCTTAAATATCATGTGTGCATCTTTGAACATAATCCGTGGTGTTCACCTCATAGAGTACACATTCCAGGATGATTATGAAGGCATATGGAATGTTGTGGCATTTCTTCTGGCGtttgtctgctgtgtgtttCAGTGCCACCTCTACCTGTTCCATTCATCTTTGAAGAAACTCAAGTCCTTCACTCTGTTGAGTGTGATCGTCCTATGCAACCTCTACCTGCTCGGCCTGAGGAATGTGTGGCAGCTCATCTTCCACATTTCAGTCGCCTCCCTCTCCACCCTCCTCATCCTCACCCGCAAAGTCCAAGACAGAACCAATGACTGTGGGGTCTGAGAAGCAGGGGGCATTTTACTGGGTTGCAATGCTCATAGCTCTTTCAGTGCAGGTGAGATCGACAGGGAAGCAAATGGTTTGACCCACATTAGGTCGAAAGATGTCGTGTGgattttttgcaaaaaaaacattttcatgaattttgtGTCATAATGGAAAATTATAATTAcaagttaatatttttttttgtatacagtatgtaattgCACTTTGTGTACATTTGTTTTCAGGACTGTAAAGAGTATACAGTAAAATGCAGTGCTCTCTTGAACCTTAAACAGAAAAGCTAAAAGGAGATGTTTGTGCCATCCTGTCCTAAAAAGTTTTTCATGAAAATGATGGAGGTTTTTTTTAGTCAgagtaactgaccaaagttttTCCATATAGAGTACAAACAATCATTTCATCACAGCCCTTACTGTTAAAGCTGCTCATGCTTGCGATGTTTATGCATTTTTGCTCACATTCAGCTCAGTATTATTTCTGCTACAGGCCCTTGATTATCTTTGCATAATCAGTTTACAATGCTAAGTGACAGTTGGTGATTgtaacagacattacagatttcattgtgcttttaaaatatacacacatggCTGATTAGCAGACAGTTATTGGTTATCACATTATCCTGTGATACCTAAATGGTTTAGTGTAGTCTGAGTTCAGATAAAAGTAGTAAAAGTAAAGCAGACAAAGcaactatttttatttgttttccatAATTTGCTTATTAGGCTACAGTACAAACCTAATGCAAGGTGTACATGTAAAGCTGTGGGTTGTTTCATGCCTTACTGGGTGACAATGCAATTGGTTTTAATTGTTTAATTGTGTTGACTTATGTACAGATACACCAGCAAGTGCTCAGCTAGTCATTGCAAAGTTTAAATGTAAGGGCTCCATTATTTATATTGGAAACTACATTCAATACAGAGGGAATATTTGTCTCACAGTCATGTAAAGGCATGATGTTAAGGCATATTATCTTACTATTTTCAACACAGTTTGTGATAAAAGGAGAATTTTATCACATCAACTCCATTTAAAACCCATTTTTGTACGATCAAAAAATTTTTGATTATTTAGTTTGTCTGTTTAATCTTTTCTCTACTGATCTCTGCATTGTCAAAATGTAAACTGCGGGTAAGAATATGAAAGCACTGATTTGATGGGTAATATACTATTGAAATTTGTTGGAAACAATTGTATGACTGCACTATTAGGCTTAGATATTGTATTGTGTTGGGTATGGCAATTATCCTTGAATGTGTTGCATATCGGGTTCAGCTATTTTTTATCCTGATTTATGTTTGCTTGGTTCATTTTTTGTCTTGTTTCAGGGTTGATTACGCTGCTCCCCTATCTGTTGTTCTCAGATTTGTATAAACATACAATTCATATGATTATAATCTATGTTTGAATATAGAACAGTAGTGCTGCTAAATAAATAGGCAAAGTCTCCTTTTAGTTCATTtctttttaacattatttagcTAATTTAGTATTTAGCTTCATAGATAGGTTTTATTAGTTGAACAGTTGCACTAATGTCTGTTTAGCAAGGGAAGTAAATTATTAGTTTATAGTGTTTGTCAAATAGCGTTGTGGcattgtgttctttttattctattttatcaAGAAAGTCAGAGggaattttaaaagaaaacaaaaaggttgCATCCCATCCGACAATCCACAATAACGTACAAATGCTTTAGAAAGAGTCGGTCGCTTTTAGCTTGTAGTTTACAAAGATGGAGGAAATTCTAATGATTTCACTGGATATGTAGAGTagctgcagaaaacatttcaaTTTGTTGTCAAGTAGGTTGCACTATCTGGGTATTTTAGCGAATTGCTGAGAATTAGATGGCTCGTTGACTTTAATGCTCGGATCATACGACAGAGGAGTACACTCTTGTTTAAATGAAGTGTTCTTGGACAGGGTTAACTTGAAATACCATAAAAAGAGGTTTTACCATTTCCACTGTAGCCTATAAGTTGTTGACCAAatgcattgtaaaaaaaataataataatgttgccACCAATGTTCTAAAAGATGTAGAACCAAATAATGTGGGAGGTATTTCAACACTTGAAATGGAAATTAAGGATAATTTGTTAATTATGATGGTTTATAACATACTGTAGAAATACACTGTACAATTGAAACGTGGCCGCCTTctcttaatgtttttttttttatcaacatctGAAGTCTTAAATCTGATCTGAATACAGGAAActgtttaaaaatgatttaggtTTAGAACCTGAAGTATGTTTAATaggatttttttcttcatttttttcaataaaaaacacgggagaattatttgtatctaattAGTCTCTCGTTAGGTTGATCCGGTGGTTTTTGTGGCTGCGACCTGTTTGTGATAATGGGAAGTAATGTACCAATGTCATTGCCTGATATCAGACAGACTTGTAAAGTTGTTACACAACTCTATGAAGGTTCAAAGGTCTGGATCCAGACAAACAATGTAACTGCCAAATACACTGGTGATTACTGGGCTTTATTTCTTCCTACTGTGGTAAAACTGACATTTCATTAATAAATAGTGTCTTTTTTCAA

Function

symbol description
sec22c Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human SEC22C (SEC22 homolog C, vesicle trafficking protein).

NR:

description
PREDICTED: vesicle-trafficking protein SEC22c

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K08520 SEC22A_C; SEC22 vesicle trafficking protein A/C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789654.1 True 3823 mRNA 0.38 7 16458333 16464016

Neighbor

gene id symbol gene type direction distance location
kpna1 kpna1 coding downstream 112261 16339112 ~ 16346072 (-)
mix23 ccdc58 coding downstream 124506 16328173 ~ 16333827 (-)
si:ch211-161h7.8 LOC104965030,LOC103368931 coding downstream 170005 16286497 ~ 16288328 (-)
ccdc191 ccdc191 coding downstream 229583 16217158 ~ 16228750 (-)
naa50 naa50,LOC106579447 coding downstream 273928 16180440 ~ 16184405 (-)
klhl40b klhl40 coding upstream 50176 16514192 ~ 16517938 (-)
hhatlb hhatl coding upstream 55026 16519042 ~ 16527050 (-)
LOC120551893 LOC103377216,LOC107591252,LOC101472906,LOC100709944 coding upstream 63648 16527664 ~ 16534798 (-)
plcd1a NA coding upstream 137613 16601629 ~ 16621681 (-)
LOC120552381 LOC104957866 coding upstream 415479 16879495 ~ 16881724 (-)
G220257 NA non-coding downstream 8112 16447930 ~ 16450221 (-)
G220254 NA non-coding downstream 91720 16365204 ~ 16366613 (-)
G220243 NA non-coding downstream 119296 16337818 ~ 16339037 (-)
G220211 NA non-coding downstream 193548 16264577 ~ 16264785 (-)
G220203 NA non-coding downstream 248792 16208258 ~ 16209541 (-)
G220272 nktr,LOC102798446 non-coding upstream 8232 16472248 ~ 16477515 (-)
G220273 NA non-coding upstream 15367 16479383 ~ 16481158 (-)
G220300 gars,LOC103369121 non-coding upstream 82912 16546928 ~ 16548724 (-)
G220373 NA non-coding upstream 230571 16694587 ~ 16701557 (-)
G220382 NA non-coding upstream 278271 16742287 ~ 16745412 (-)
drd3 drd3 other downstream 173598 16266303 ~ 16284735 (-)
G220124 NA other downstream 393112 16064670 ~ 16065221 (-)
G220117 usp12,LOC107701680,LOC107705210 other downstream 453569 16003879 ~ 16004764 (-)
si:ch211-140b10.6 polr1d other downstream 484670 15968731 ~ 15973663 (-)
mtfr1 NA other downstream 777445 15676254 ~ 15680888 (-)
LOC120552205 LOC100711537,LOC102295084,LOC108230444,LOC106948898,LOC103140410 other upstream 318056 16782072 ~ 16795124 (-)
G220412 csrnp1,LOC104937158,LOC102793366 other upstream 410633 16874649 ~ 16875300 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other upstream 1962746 18426762 ~ 18483776 (-)
G220833 NA other upstream 2146220 18610236 ~ 18697970 (-)
LOC120552352 colec12,LOC102798044 other upstream 2308961 18772977 ~ 18810944 (-)

Expression


Co-expression Network