drosha (drosha)


Basic Information

Item Value
gene id drosha
gene name drosha
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 24193378 ~ 24297851 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789682.1
GATCCGATCGCTGATTGGTCCACCCTTGTTCCTCTCTCTAACCATTCCGACCCGAAACACGGCTCCTCGGAAAGCGTGATACCCAACCGATTGCAAATCTTCATATAAGTATCCTTGTTTAAGACATTTTATGCTAGCGtaattttaagttttttaaCCAATAGTAAAGACTGAATGATAAGCTTCTGTTCCTAGCGCTCCTTATTTTTGAAGTCATGTCTTTCCATCAGGATCGGGAGAGCTCCAAGGGAGGAATGCCCCCAGGCCAGCACGGCTCCGCTCAGAACTACCGACCCGCCAACCTGAGGCCGCCACCTCCCCATCCTCCCGTTCCCCCGTACCACTACGATCCCCAGACCCCTCCCATTTCAAGCTACCATGGAAACAGCGGCTACATGCCTCCGCACTCTGACTTCATGCAGTACCCTCCGCCAGCACCGCCCCAGACTCCCAGTTCTATTAACCAGTGCCCAGTGCGCCCACCGTTCCCCAAGCCCCCTGTCCGCCACGGCTACCCGGAACCCCCGCCTAACTTTCCACCTCCTCCCCTTCCCAGCTCCACAGGTGGTCCCACATCAGTGTCCCAGGTGGCTGCTCAGAATGCCTACCACCCTTACATGATGCCTCCCGTGCCCCCACCACCATTAACCCACCCATCCATGCCCCCACCCATAGCTTCTCACTCTATGGGCTACCACTCTCCATACTCCATGAACTACCCGCATCCTCCCCACCCTCCTTTCCCTCCTCCTACCTTCAACCCTGGCTACACCCAGAGCCCCAGCTCATTCAAACCAGACCACAGCTTCCAGCACGGGGGGCAATACAAGCATGAGAAGCCCATGGACAACAGGAGGTCTCCAGAAAGAGGGTATCGCGACAGTGATCACAGGCAGAAGGGCTTCGGCTACGGTAGCCACAGTGACAGGCATAAAATGGAGTTCCCTGGAGAGAGGAAGGACCGCGGGAGGAGTCCAGACAAGCGCGGCAGGCCGGAGGGCGGACGGTACAGGTCTGAGTACGACAGAGGCCGGGCTTCCCCCAGACACAGGAGCAGGGAACGTAGCAGGGAGAGGTATCGTCACAGAGAAAGTCGGAGATCCCAGTCGCCCGACAGGCACAGAAAGAGGCCTCGAAGTCGTTCCACAAGCAGAGACAGGAAACGTGGTCGCTGGGAAGAGGAGAGGGACCGAAGGACGGAGAGCTCCTCCGGCCTGAGCAGAGAGCGCAGCTACTCCTCCGCCAGGAGCCGAGACTCCGAAGAGTCCTTCGCCGACCGAGAGCGAGAGCGTGAACGAGAACGGGACcgagacagagagacggagaaagagaaagaaaagggggattttgagaaagaagaagaagagcagctGAAACCTGCCTGGATCCGCTGCACACACGCTGAGAACTACTACTCCAATGACCCCATGGACCAAGTGGGAGACTCTACTGTGGTGGGGACCAGTAAACTACGGGACCTGTACGAGCGCTTTGAGGAAGAGCTGgggaggagacaggagagagcCAAGGCCGCTCGGCCGGTATGGGACCCGCCCAAGACCAAACTAGATGAGGATCCAGGTGGGCCTTCCTGCAAAACTAACGACAGCAGTAGTGAGTCAGACTGTGAGTCAGACGGCGAAGGGAGCACCTGCTCCAGCAGCTCTGACTCCGACGTGTTTGATGTCATTGCTGAGATCAAGAGAAAGAAAGCTCACCCTGACCGCCTGCACGAGGAGCTGTGGTACAACGACCCCGGGCAGATGAATGATGGCCCCTTgtgtaagtgcagtgccaaggcCAGACGTACAGGGATCCGCCACAGCATCTACCCAGGGGAAGAGcctGTGAAACATTGTCGCCCAATGAACAACAATTCGGGAAAGCTGTTCCACTACAGGATCACTGTTTCTCCTCCGACCAACTTCCTGactgaCCGGCCGACTGTGATCGAGTACGATGACCACGAGTACCTGTTTGAAggcttctctcttttctcccacACCCCTCTCACTAACATTCCATTGTGCCGTGTGATCCGCTTCAACATAGATTACACCATTCACTTCATAGAGGAGATGGCACCGGAGAACTACTGTGTCCAAGGCCTGGAGCTATTTGCCTCCTACTTGTTCAAGGATATTCTTGAGCTGTATGACTGGAACCTGACAGGTCCTGAGTTCGAGGCCTCTGGATGCCAGCGGTTCCATTTCATGCCCCGCTTTGTCCGATTCTTACCTGATGGCGGGAAGGAGGTGCTGTCCATGCATCAGGTGCTGCTCTACCTGCTGCGCAGCAGCAAGCCCCTGGTCCCCGAGGAGGAGATTGCAGACATGCTGCAGTGGGAGGAGCTGGAGTGGCAGAAATACGCGGAGGAGTGCAAGGGCATGATCGTCACCCACCCGGGCATGAAACCAAGCTCCGTGCGCATCGACCAACTGGACAGGGAGCAGTTCAACCCAGACGTCATCACCTTCCCCATCATCGTTCATTTTGGCATCAGGCCGGCTCAGCTCAGCTATGCCGGAGACCCTCAGTACCAGAAGCTGTGGAAGAGCTATGTGAAACTCCGCCACCTGCTGGCCAACAGCCCTAAGGTCAAGCAGATTGACAAGCAGAagctgacacagagagagGAAGCTCTTCAGAAGATCCGTCAGAAGAACACTATGCGCCGTGAGGTGACGGTGGAGCTCAGCAGTCAGGGATTTTGGAAGACCGGCATCCGCTCCGACGTCTGTCAGCACGCCATGATGCTGCCTGTCCTCACCCATCATATCCGGTACCACCAGTGTCTGATGCACCTGGACGCTCTCATTGGCTACGTCTTCAAGGAGCGCTGCCTCCTTCAGCTGGCCATGACTCACCCCAGTCACCACCTCAACTTTGGCATGAATCCGGACCATGCCCGCAACTCGCTTTCCAACTGTGGCATCCGCCAGCCCAAGTACGGTGACAGGAAGGTCCACCACATGTACATGAGGAAGAAGGGAATCAACACGTTGATTAACATCATGTCTCGTCTGGGGCAGGATGACCCCTCCCCTTCCAGGATCAATCACAACGAGAGACTGGAGTTCCTGGGCGATGCTGTTGTCGAGTTCCTCACCAGTGTCCACTTGTACTACCTTTTTCCCAGTTTAGAGGAGGGCGGCCTGGCTACCTACAGGACAGCCATCGTACAGAACCAGCACTTAGCCATGCTCGCCAAGAAACTGGAGTTGGATCGCTTCATGCTCTACGCTCACGGACCCGATCTGTGCCGCGAGTCGGACCTGCGACACGCCATGGCCAACTGCTTTGAGGCTCTTATCGGTGCTGTGTATTTGGAAGGAGGCTTGGACGAGTCCCGGCAGCTCTTTGGTAGACTGCTTTTCAACACCAAGGGCCTACAGGAGGTCTGGCTCAACTACCCTCAACATCCCCTGCAGGTCCAGGAGCCTCAGACGGACAGGCAGCTGATTGAGACGTCTCCCGTCCTCCAGAAACTGACCAGCTTCGAGGACTCGATTGGAGTTTTGTTCACACATGTGCGTCTTCTGGCCAGAGCCTTCACCCTGAGGACTGTGGGCTTCAACCACCTCACCCTAGGCCACAACCAGAGGATGGAGTTCTTGGGAGACTCTATCatgcagctggtggccacaGAGTACCTCTTCATCCACTTCCCTGACCACCATGAAGGACATTTAACACTGCTCCGCAGTTCGCTGGTAAACAACCGCACGCAGGCCAAAGTGGCGGAGGAGTTGGGCATGCAGGACTTCGCCATTACCAATGACAAAACCAAACGGCCAGTCGCACTACGGACCAAGACTCTGGCTGACTTGTTGGAGTCTTTCATCGCAGCTCTCTACATCGATAAAGATCTGGAGTATGTGCACACCTTCATGAACGTCTGCTTTTTCCCCCGGCTGAAGGAGTTCATTCTGAACCAGGACTGGAATGACCCAaagtctcagctgcagcagtgcTGTTTGACCCTGAGAACGGAGGGCAAGGAGCCTGATATCCCGCTGTACAAGACCCTGCAGACAGTGGGGCCCTCACACGCTCGCACCTACACCGTTGCTGTGTATTTCAAAGGGGAGCGAATCGGCTGTGGCAAAGGCCCAAGCATCCAACAGGCGGAAATGGGAGCTGCGATGGATGCGCTCGAAAAATATAACTTCCCACAGATGGCTCATCAGAAGCGCTTCATCGAGCGGAAATACAGACAGGAGCTGAAGGAGATGAGACGAGAGCGGGAGCGGCAGGAGAAGGAGACCGACGAGCCGGAGGAATGCAGGAAGTGACAGCACCTTTTTTTGGAGGCCAATCCGGATCCGCATCCACATTAAGGAGCTCTGACTGCAAAGGTGGCAGCCGTCCAGGCAAGAGTTGGCAAAATACAGACGCCACTAGTAAACTGTGGAGCTGTGGTAGTTTAGAAATGATGATTGACTGTTGCCTAAGTTCTACACGGACATTTGTGGGACACTGGTGAGCATTAGTTGGGTTGCTTTGACGCTTAACCTAGAGATTTGAGctgaaattagttttttttgtccacaATTTCATCTTTTATGCTGTTTAGTACTGTAGCACTGTCAAAGGTGGCCTTATGTTGtcttatgtttatgtttgttaCCTAATCTTTAAATATTAAGTTAACATTTTAACCCAAAACCACAGCAGGAGCTCACAATGTCACTGAAACATGCcataaaaagtttttaaatgAAGTATGAAATGCTAAATAAACCATGgaatattttattgtaaataaaGTTTCAGATTAAATGTCGAAAA
>XM_039789683.1
ATCCGATCGCTGATTGGTCCACCCTTGTTCCTCTCTCTAACCATTCCGACCCGAAACACGGCTCCTCGGAAAGCGTGATACCCAACCGATTGCAAATCTTCATATAAGTATCCTTGTTTAAGACATTTTATGCTAGCGtaattttaagttttttaaCCAATAGTAAAGACTGAATGATAAGCTTCTGTTCCTAGCGCTCCTTATTTTTGAAGTCATGTCTTTCCATCAGGATCGGGAGAGCTCCAAGGGAGGAATGCCCCCAGGCCAGCACGGCTCCGCTCAGAACTACCGACCCGCCAACCTGAGGCCGCCACCTCCCCATCCTCCCGTTCCCCCGTACCACTACGATCCCCAGACCCCTCCCATTTCAAGCTACCATGGAAACAGCGGCTACATGCCTCCGCACTCTGACTTCATGCAGTACCCTCCGCCAGCACCGCCCCAGACTCCCAGTTCTATTAACCAGTGCCCAGTGCGCCCACCGTTCCCCAAGCCCCCTGTCCGCCACGGCTACCCGGAACCCCCGCCTAACTTTCCACCTCCTCCCCTTCCCAGCTCCACAGGTGGTCCCACATCAGTGTCCCAGGTGGCTGCTCAGAATGCCTACCACCCTTACATGATGCCTCCCGTGCCCCCACCACCATTAACCCACCCATCCATGCCCCCACCCATAGCTTCTCACTCTATGGGCTACCACTCTCCATACTCCATGAACTACCCGCATCCTCCCCACCCTCCTTTCCCTCCTCCTACCTTCAACCCTGGCTACACCCAGAGCCCCAGCTCATTCAAACCAGACCACAGCTTCCAGCACGGGGGGCAATACAAGCATGAGAAGCCCATGGACAACAGGAGGTCTCCAGAAAGAGGGTATCGCGACAGTGATCACAGGCAGAAGGGCTTCGGCTACGGTAGCCACAGTGACAGGCATAAAATGGAGTTCCCTGGAGAGAGGAAGGACCGCGGGAGGAGTCCAGACAAGCGCGGCAGGCCGGAGGGCGGACGGTACAGGTCTGAGTACGACAGAGGCCGGGCTTCCCCCAGACACAGGAGCAGGGAACGTAGCAGGGAGAGGTATCGTCACAGAGAAAGTCGGAGATCCCAGTCGCCCGACAGGCACAGAAAGAGGCCTCGAAGTCGTTCCACAAGCAGAGACAGGAAACGTGGTCGCTGGGAAGAGGAGAGGGACCGAAGGACGGAGAGCTCCTCCGGCCTGAGCAGAGAGCGCAGCTACTCCTCCGCCAGGAGCCGAGACTCCGAAGAGTCCTTCGCCGACCGAGAGCGAGAGCGTGAACGAGAACGGGACcgagacagagagacggagaaagagaaagaaaagggggattttgagaaagaagaagaagagcagctGAAACCTGCCTGGATCCGCTGCACACACGCTGAGAACTACTACTCCAATGACCCCATGGACCAAGTGGGAGACTCTACTGTGGTGGGGACCAGTAAACTACGGGACCTGTACGAGCGCTTTGAGGAAGAGCTGgggaggagacaggagagagcCAAGGCCGCTCGGCCGGTATGGGACCCGCCCAAGACCAAACTAGATGAGGATCCAGACGACAGCAGTAGTGAGTCAGACTGTGAGTCAGACGGCGAAGGGAGCACCTGCTCCAGCAGCTCTGACTCCGACGTGTTTGATGTCATTGCTGAGATCAAGAGAAAGAAAGCTCACCCTGACCGCCTGCACGAGGAGCTGTGGTACAACGACCCCGGGCAGATGAATGATGGCCCCTTgtgtaagtgcagtgccaaggcCAGACGTACAGGGATCCGCCACAGCATCTACCCAGGGGAAGAGcctGTGAAACATTGTCGCCCAATGAACAACAATTCGGGAAAGCTGTTCCACTACAGGATCACTGTTTCTCCTCCGACCAACTTCCTGactgaCCGGCCGACTGTGATCGAGTACGATGACCACGAGTACCTGTTTGAAggcttctctcttttctcccacACCCCTCTCACTAACATTCCATTGTGCCGTGTGATCCGCTTCAACATAGATTACACCATTCACTTCATAGAGGAGATGGCACCGGAGAACTACTGTGTCCAAGGCCTGGAGCTATTTGCCTCCTACTTGTTCAAGGATATTCTTGAGCTGTATGACTGGAACCTGACAGGTCCTGAGTTCGAGGCCTCTGGATGCCAGCGGTTCCATTTCATGCCCCGCTTTGTCCGATTCTTACCTGATGGCGGGAAGGAGGTGCTGTCCATGCATCAGGTGCTGCTCTACCTGCTGCGCAGCAGCAAGCCCCTGGTCCCCGAGGAGGAGATTGCAGACATGCTGCAGTGGGAGGAGCTGGAGTGGCAGAAATACGCGGAGGAGTGCAAGGGCATGATCGTCACCCACCCGGGCATGAAACCAAGCTCCGTGCGCATCGACCAACTGGACAGGGAGCAGTTCAACCCAGACGTCATCACCTTCCCCATCATCGTTCATTTTGGCATCAGGCCGGCTCAGCTCAGCTATGCCGGAGACCCTCAGTACCAGAAGCTGTGGAAGAGCTATGTGAAACTCCGCCACCTGCTGGCCAACAGCCCTAAGGTCAAGCAGATTGACAAGCAGAagctgacacagagagagGAAGCTCTTCAGAAGATCCGTCAGAAGAACACTATGCGCCGTGAGGTGACGGTGGAGCTCAGCAGTCAGGGATTTTGGAAGACCGGCATCCGCTCCGACGTCTGTCAGCACGCCATGATGCTGCCTGTCCTCACCCATCATATCCGGTACCACCAGTGTCTGATGCACCTGGACGCTCTCATTGGCTACGTCTTCAAGGAGCGCTGCCTCCTTCAGCTGGCCATGACTCACCCCAGTCACCACCTCAACTTTGGCATGAATCCGGACCATGCCCGCAACTCGCTTTCCAACTGTGGCATCCGCCAGCCCAAGTACGGTGACAGGAAGGTCCACCACATGTACATGAGGAAGAAGGGAATCAACACGTTGATTAACATCATGTCTCGTCTGGGGCAGGATGACCCCTCCCCTTCCAGGATCAATCACAACGAGAGACTGGAGTTCCTGGGCGATGCTGTTGTCGAGTTCCTCACCAGTGTCCACTTGTACTACCTTTTTCCCAGTTTAGAGGAGGGCGGCCTGGCTACCTACAGGACAGCCATCGTACAGAACCAGCACTTAGCCATGCTCGCCAAGAAACTGGAGTTGGATCGCTTCATGCTCTACGCTCACGGACCCGATCTGTGCCGCGAGTCGGACCTGCGACACGCCATGGCCAACTGCTTTGAGGCTCTTATCGGTGCTGTGTATTTGGAAGGAGGCTTGGACGAGTCCCGGCAGCTCTTTGGTAGACTGCTTTTCAACACCAAGGGCCTACAGGAGGTCTGGCTCAACTACCCTCAACATCCCCTGCAGGTCCAGGAGCCTCAGACGGACAGGCAGCTGATTGAGACGTCTCCCGTCCTCCAGAAACTGACCAGCTTCGAGGACTCGATTGGAGTTTTGTTCACACATGTGCGTCTTCTGGCCAGAGCCTTCACCCTGAGGACTGTGGGCTTCAACCACCTCACCCTAGGCCACAACCAGAGGATGGAGTTCTTGGGAGACTCTATCatgcagctggtggccacaGAGTACCTCTTCATCCACTTCCCTGACCACCATGAAGGACATTTAACACTGCTCCGCAGTTCGCTGGTAAACAACCGCACGCAGGCCAAAGTGGCGGAGGAGTTGGGCATGCAGGACTTCGCCATTACCAATGACAAAACCAAACGGCCAGTCGCACTACGGACCAAGACTCTGGCTGACTTGTTGGAGTCTTTCATCGCAGCTCTCTACATCGATAAAGATCTGGAGTATGTGCACACCTTCATGAACGTCTGCTTTTTCCCCCGGCTGAAGGAGTTCATTCTGAACCAGGACTGGAATGACCCAaagtctcagctgcagcagtgcTGTTTGACCCTGAGAACGGAGGGCAAGGAGCCTGATATCCCGCTGTACAAGACCCTGCAGACAGTGGGGCCCTCACACGCTCGCACCTACACCGTTGCTGTGTATTTCAAAGGGGAGCGAATCGGCTGTGGCAAAGGCCCAAGCATCCAACAGGCGGAAATGGGAGCTGCGATGGATGCGCTCGAAAAATATAACTTCCCACAGATGGCTCATCAGAAGCGCTTCATCGAGCGGAAATACAGACAGGAGCTGAAGGAGATGAGACGAGAGCGGGAGCGGCAGGAGAAGGAGACCGACGAGCCGGAGGAATGCAGGAAGTGACAGCACCTTTTTTTGGAGGCCAATCCGGATCCGCATCCACATTAAGGAGCTCTGACTGCAAAGGTGGCAGCCGTCCAGGCAAGAGTTGGCAAAATACAGACGCCACTAGTAAACTGTGGAGCTGTGGTAGTTTAGAAATGATGATTGACTGTTGCCTAAGTTCTACACGGACATTTGTGGGACACTGGTGAGCATTAGTTGGGTTGCTTTGACGCTTAACCTAGAGATTTGAGctgaaattagttttttttgtccacaATTTCATCTTTTATGCTGTTTAGTACTGTAGCACTGTCAAAGGTGGCCTTATGTTGtcttatgtttatgtttgttaCCTAATCTTTAAATATTAAGTTAACATTTTAACCCAAAACCACAGCAGGAGCTCACAATGTCACTGAAACATGCcataaaaagtttttaaatgAAGTATGAAATGCTAAATAAACCATGgaatattttattgtaaataaaGTTTCAGATTAAATGTCGAAAA

Function

symbol description
drosha Predicted to enable double-stranded RNA binding activity and ribonuclease III activity. Acts upstream of or within with a positive effect on primary miRNA processing. Acts upstream of or within angiogenesis. Predicted to be active in nucleus. Orthologous to human DROSHA (drosha ribonuclease III).

NR:

description
ribonuclease 3 isoform X2

GO: NA

KEGG:

id description
K03685 rnc, DROSHA, RNT1; ribonuclease III

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789682.1 True 4791 mRNA 0.54 32 24193378 24297851
XM_039789683.1 False 4769 mRNA 0.54 32 24193378 24297850

Neighbor

gene id symbol gene type direction distance location
cdh10a LOC102783614,LOC100705471,LOC101477094,LOC102310056,LOC102199257 coding downstream 526521 23633683 ~ 23666857 (-)
LOC120552656 cdh18,LOC102310872 coding downstream 885343 23128644 ~ 23308035 (-)
LOC120552718 NA coding downstream 1122481 23068720 ~ 23070897 (-)
LOC120552717 LOC104965202,LOC103365305 coding downstream 1272122 22912562 ~ 22921256 (-)
LOC120552328 epc1,LOC102784371,LOC100694393 coding downstream 1305147 22841027 ~ 22888231 (-)
mc4r LOC104930272,LOC103365861,LOC104961440 coding upstream 59758 24357609 ~ 24361216 (-)
rnf152 rnf152 coding upstream 362260 24660111 ~ 24723840 (-)
LOC120552289 NA coding upstream 466810 24764661 ~ 24770211 (-)
LOC120552302 NA coding upstream 474055 24771906 ~ 24777805 (-)
psme2 psme2 coding upstream 564659 24862510 ~ 24869834 (-)
G222041 LOC104961439,LOC108234716,LOC107988374,LOC107089423 non-coding downstream 578 24189134 ~ 24192800 (-)
G222039 NA non-coding downstream 15391 24177740 ~ 24177987 (-)
G222038 LOC104961439,LOC107383085 non-coding downstream 24829 24168312 ~ 24168549 (-)
G222037 LOC105920180,LOC107100491,LOC106522295,LOC107383085 non-coding downstream 40616 24152479 ~ 24152762 (-)
G222012 NA non-coding downstream 369700 23823353 ~ 23823678 (-)
G222062 cdh20,LOC103456703,LOC102782851 non-coding upstream 311610 24609461 ~ 24609679 (-)
G222088 NA non-coding upstream 497015 24794866 ~ 24795350 (-)
LOC120552180 NA non-coding upstream 596721 24894572 ~ 24904700 (-)
LOC120552179 NA non-coding upstream 630473 24928324 ~ 24954497 (-)
G223155 NA non-coding upstream 698775 24996626 ~ 25023914 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other downstream 673852 23401543 ~ 23519526 (-)
smpx smpx other downstream 1974997 22202767 ~ 22218381 (-)
LOC120552473 NA other downstream 2072767 22114382 ~ 22120611 (-)
tfr1b NA other downstream 2182292 21990017 ~ 22011086 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other downstream 2971711 21217680 ~ 21221667 (-)
avl9 avl9 other upstream 498738 24796589 ~ 24854888 (-)
msl2b msl2,LOC102304425,LOC102778660 other upstream 665566 24963417 ~ 24968106 (-)
LOC120552232 LOC103371349 other upstream 738033 25035884 ~ 25086902 (-)
LOC120552299 NA other upstream 1258622 25556473 ~ 25562540 (-)
LOC120552722 NA other upstream 1424639 25722490 ~ 25738940 (-)

Expression


Co-expression Network