XLOC_005013 (LO017648.1)


Basic Information

Item Value
gene id XLOC_005013
gene name LO017648.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 48744016 ~ 48767794 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009791
ATGATGGCAGTGCGAGGCACGGTTCCTCCTCCGGATTATTACCCGTTTGACATCGCCCTCTCGGCCCAGCCACCAGAAGACCTGCAGGGCTTTTATAAGGCAAACCAGCACATGCTGAGCAGATCCGGCTCGCATTACGGCCTCTCCAGGACTGCATGGGATCAGACTCGAGCGGCTACTCCCggtcctcctccacctcctccaccgCCCCCTCCACCCCCTCCTCCACCCCCGCCCTCGGCTCACGAGATCAGCCGCATGTACAGGGATTCCCTCTCCATCAAGATGATCCCAGACACTCAGCGCATTCGCAGTAGAGCCGCTTCTCCAGCCTGCTTCGGCGTTGAATCTGGCTATCCCGGTCACTCCATTCCCGCAGACCTGAACGGATATTCCCTGGAGTCCTGTCAGCCGGCCTCCACCTGCATCGTGGTGGATCCCACAGCCTCAGGTATGGACGGGAATATTCCCCGGGGAACTCTTTCCTATGGTTCTGTGGTGACTCAAAGGATGCCGTATGACCCTGCGTATGATCCAGGATCTGCTATGGTGCATGCATCACCTGCTCCGCTGAACACAGGTATGCCAGCGCACCATCCATCAGCGGGAGTCGACCCCAAGAGAAACGTGGATCCAAGTTTTCTTGCACTCCTTCGCTCTGAGGGTCTGTCAGAAAGCACCATTACTCTACTCCTACAGCAAGGGTTTGATTCCACATCGATGCTTGCCATGATGGAAGATCATGACGTCCGTTCTGTGGCTCCCAATTTGGGTCAAGCACGAGTGTTATCCCGAATTGTGCTGAATTGCAAGACTGGAGCGACTGTAATGCGCGGTCGCTCCAATAGCTTCAGTCACCGTAATGATCTCTACATGCAGCCGCAGAGTCTGGGTATGGATGCACAGCTCATGCAGCAGCCTCCGAATGCTTTGCAGTCTGTTTCTCCGAGGATGGGAGAGTTTTTGGGTCGTAGACCCAGCAGTGCACCATCGCAACATCTACTGGAAACCACTACATATCCTGCAAGTCGTCCGATTGGAGGTCTCGCGGTTAGTCCGGGCGGTTACACCAATGCTTTGCCTCAATCGCGTCCATTATCAATGTATAATGCTCACACCGGTCTGGCCATGTCTGCTCTGCCGGCTCAGCAACAGCCTCCGATGACTCCAGGAGCGGCTCCGAAGACGTTTTCCGGCACGTACACGCCGATGGAGCTGATGAAGCGTCCTCCCAACCTGCCTCCGCTGTCTCCGGCTCACAGTCCGCATCTGAGCCCTCAGTTGATGCGCAAAGGAGCAGCGGTGGAAAATGCCGTCATTCCAGCATCCTCCGCCGTCCAGACGCAGAATATTAATGCCAATAACAAGCAGACCCGCAGAACCGGACCTCCAGTCATCGTGTCCACCATGGCTTCACCGGAAACAAgtatcCGCCCTCAGCTGGTGAACGGGCCTCTTCATCCTCGTCCTCTGGTGGCTCTGCTGGACGGTCGGGACTGTACGGTGGAGATGCCCATCCTTAAAGATCTGGCAACCGTTGCCTTCTGTGACGCCCAGTCCACACAGGAGATCCATGagaagattttaaatgaa
>TCONS_00010778
CACGAGATCAGCCGCATGTACAGGGATTCCCTCTCCATCAAGATGATCCCAGACACTCAGCGCATTCGCAGTAGAGCCGCTTCTCCAGCCTGCTTCGGCGTTGAATCTGGCTATCCCGGTCACTCCATTCCCGCAGACCTGAACGGATATTCCCTGGAGTCCTGTCAGCCGGCCTCCACCTGCATCGTGGTGGATCCCACAGCCTCAGGTATGGACGGGAATATTCCCCGGGGAACTCTTTCCTATGGTTCTGTGGTGACTCAAAGGATGCCGTATGACCCTGCGTATGATCCAGGATCTGCTATGGTGCATGCATCACCTGCTCCGCTGAACACAGGTATGCCAGCGCACCATCCATCAGCGGGAGTCGACCCCAAGAGAAACGTGGATCCAAGTTTTCTTGCACTCCTTCGCTCTGAGGGTCTGTCAGAAAGCACCATTACTCTACTCCTACAGCAAGGGTTTGATTCCACATCGATGCTTGCCATGATGGAAGATCATGACGTCCGTTCTGTGGCTCCCAATTTGGGTCAAGCACGAGTGTTATCCCGAATTGTGCTGAATTGCAAGACTGGAGCGACTGTAATGCGCGGTCGCTCCAATAGCTTCAGTCACCGTAATGATCTCTACATGCAGCCGCAGAGTCTGGGTATGGATGCACAGCTCATGCAGCAGCCTCCGAATGCTTTGCAGTCTGTTTCTCCGAGGATGGGAGAGTTTTTGGGTCGTAGACCCAGCAGTGCACCATCGCAACATCTACTGGAAACCACTACATATCCTGCAAGTCGTCCGATTGGAGGTCTCGCGGTTAGTCCGGGCGGTTACACCAATGCTTTGCCTCAATCGCGTCCATTATCAATGTATAATGCTCACACCGGTCTGGCCATGTCTGCTCTGCCGGCTCAGCAACAGCCTCCGATGACTCCAGGAGCGGCTCCGAAGACGTTTTCCGGCACGTACACGCCGATGGAGCTGATGAAGCGTCCTCCCAACCTGCCTCCGCTGTCTCCGGCTCACAGTCCGCATCTGAGCCCTCAGTTGATGCGCAAAGGAGCAGCGGTGGAAAATGCCGTCATTCCAGCATCCTCCGCCGTCCAGACGCAGAATATTAATGCCAATAACAAGCAGACCCGCAGAACCGGACCTCCAGTCATCGTGTCCACCATGGCTTCACCGGAAACAAGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000108372

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009791 False 1593 mRNA 0.56 3 48744016 48767794
TCONS_00010778 True 1185 lncRNA 0.55 1 48744259 48745443

Neighbor

gene id symbol gene type direction distance location
XLOC_005012 mmp21 coding upstream 46645 48683208 ~ 48697371 (+)
XLOC_005011 uros coding upstream 61265 48674381 ~ 48682751 (+)
XLOC_005010 NA coding upstream 79571 48662791 ~ 48664445 (+)
XLOC_005009 zgc:165653 coding upstream 87740 48634927 ~ 48656276 (+)
XLOC_005008 SYDE1 coding upstream 116619 48581588 ~ 48627397 (+)
XLOC_005014 zmiz1b coding downstream 16937 48784731 ~ 48800731 (+)
XLOC_005015 ppifb coding downstream 35304 48803098 ~ 48811125 (+)
XLOC_005016 anxa11b coding downstream 48194 48815988 ~ 48837308 (+)
XLOC_005017 dlg5b.1 coding downstream 73388 48841182 ~ 48887804 (+)
XLOC_005018 NA coding downstream 120127 48887921 ~ 48896104 (+)
XLOC_005007 NA non-coding upstream 170813 48548094 ~ 48573203 (+)
XLOC_005005 NA non-coding upstream 324025 48414527 ~ 48419991 (+)
XLOC_005002 NA non-coding upstream 413122 48328866 ~ 48330894 (+)
XLOC_004992 NA non-coding upstream 1133686 47606871 ~ 47610330 (+)
XLOC_005021 CABZ01075114.1 non-coding downstream 265929 49033723 ~ 49038796 (+)
XLOC_005022 NA non-coding downstream 293368 49061162 ~ 49062445 (+)
XLOC_005024 NA non-coding downstream 342461 49110255 ~ 49118403 (+)

Expression


Co-expression Network