LOC120552041 (ahrr)


Basic Information

Item Value
gene id LOC120552041
gene name ahrr
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8639541 ~ 8712753 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789686.1
ctgtgtgtgcgcttgcGCTGTTTGTGAGGCAGAGAGTTGCGTGCGAAGGGCTCGACATGTCATTCAGAGGAATCCGCCACCTGAAACGCGAGGAAGTGAAGGCGACTCAATTGGGTATAAAGCATCAGCCAACATCTGCCCCGAGCAGTGCAAAGCTGATGAAAACATCAGATCGGAGCTCACACAGGACCTCTACGATTTATTTGATTTCCCTTGGATCATTTGGCATTACCGAGTCGGTGCACCCAGAGAGAAGCATCACTTTGCTGCACTTTAAGTGAATGTGTCTCCACAGCCATCACTATACTGGAATTAACTGATACCCCCAGGGATTTTGGCGCACCTGTTACCTCCACAGAGCGCGAAATCATGATCCCTCCGGGAGACTGCATGTATGCGGGCAGAAAGAGGAGGAAGCCCGTCCAAAAACAGAAGCCGTCTGCTGCCAATGAGAAAACCAACCCGTCCAAGCGGCACAGAGACAGGCTGAATGCTGAGCTGGACCGGCTGGCCAGCCTGCTGCCGTTCCCCGCGGATGTCATCTCCAAGCTGGACAAGCTGTCCGTGCTGCGCCTTGCAGTTTCCTACCTCCGCGTCAAGAGCTTCTTCCAAGcaAACAATGAGAAGCCCTCCAGGAAGCACGGCATCAGCACAGCATCCTCTAACCCTGAACCCCGGAAAGAGAGCATTCCCCTGGGCACCACCGTCAATGAAAGCAGCCTCCTGCTGGAAtcTCTTACAGGCTTTGCCTTGGTGGTGAGCAGTGATGGCATGGTTTTTTATGCCTCTTCAACCATTGTGGACTATCTTGGTTTTCATCAGACTGACGTGATGCACCAGAATGTGTTTGACTACATCCACATAGACGACCGTCAGGAGTTCAGACGGCAGCTCCACTGGGCCATGTGTCCCCCACAGGGGATGTCAGCACACCAGGACAGCCAGTTAGCTGCAGGGACTGGTGAGGACTTTGTAGTGAGCAGCCTGTTCCATTCTGCGGAGGGAGGGGGAATTCCTCCTGAGCTCTCCTGCTTTCTCAACAGATGTTTCATTGCCAGAGTCCGATGCCTCTTGGACAGCACCTCTGGATTCTTGACTATGCAGTTCCAGGGTCGGTTGAAGTTCCTCCACGGTCAGAAAAAGAAGTCAGCCTCCGGGGCTCTGTTGCCTCCCCAGATGGCTCTATTCTGCATAGGTGTACCCCTCCTACTGCCCTCCATCACTGAGATGAAAATGAAGAACATGTTAATGCGGGGAAAGAAcaagggaggaggtggagggattatCTCTGCACTGGAGCATGATGAGCGAGGGGAACACCTCCGGAGGCATTCCTTCAGTGGAGGAATGGGGGACATTGCcgaccctctcctcctctcctgtcccACTCCTGGGGCTACCCAGCGGGGTCACCACACTCCCTGGACCCCGCTCTCCAAATACAACCTCAAGTACCGCCCTGAGGGTTTCTACAACCAGGAGGAGCCCCTCAACTACTGCAAGTCCACTGTGGATCCCCATAAAGGTGTCAGCCCAGGCCTGGGCGGCGGCTGGCCTCTGCGGCCAAACTCAGGTCCCCTGAGAGCAGGCCAGGGTGTTGGCTATATCCCCTCCAACCGCATGAACAAAGCCGGCCAGTATGGGAAGCCATACCGCCTTTCCCCCAACTGCCACAGCGGCAGAGGTAACGAGGTGTTTGTCTCTAAGCTCTACGGGAACGTCCAGATTCCCACAGACCCAGATGCCTACTGTGTGGACCTGGTGAAGAACGAGAACGGCTACGGCGAATGCTACGATGGCCATCTGATGCCTGAGATGCCACCCATCAAGGTAGAGCAAGACTCGGACTCTGAGAACGGCTGCGATGTCTACGGGCGACCCTGGGCTTGCCGCGACCCAGATGCCATCGACCGCCGCTATGGTAACGGGGTATACGACCAGAGCTCAGGCCTCCATCTCAAATCAGAGGGAGATTATTATGACCCGCAGTACTCGCCCTGTCAGCGAGGGAAAGCAGGAATCAGCCCGCCGTACAACAACGGCAACTATCAGAACTATGCAGTCAACAACAACGGGAACACAACCGGCCGTCTCTTAAAAGGCGACAAAGACTTGGGCAGTAACAATGACAACAGCCAGTTTAGCCCTCAGAGACTCTCTCACTCAGACTCTCTATGCAGCAACCAATCAGTCAACCTCATGGACTATTCACAAGACCCTCACAAGGCCTACATGCACCAGGACTACAACAAGCACAACACTTATGAGTTCAAAGGGCACAGTCTGGTTCACTCGATCAAGCGGGAGCCCATGGACTCCCCCCCGTGGTCTGAGAGCGCTCATGACATGAGCCAGTCCATGATGGTTGGTCCACGGAACGTTATGCCATGTGTTATGAGCACAGGGCACCACAAGTCTAGTCCCTACATTTATTTGCCATAAAAGTGATTAGTGCAAACACAGAAGATAATttcatgcacacatgcatgtgtacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcacacacacaaagtgacaTGCACCAGCATTACAAAAGGATTCCCAGGATGTCAACATTTAGCATGACTTCTTCTATTTGATGAAGGAGTCACAAACAAGGCTCAGGTTCTAGTGTTAGCGTTGTGACAATCAAATATAATACTTTGAATCCAGTTTATAGATagatgattttgtttttaaggaATACATTTTGTAGTTGGTTCCTAGCACTTTTGGATTTAGTGACAATGAGACGAATTACGTCTAGAAAcacaattttattttgttttatgtgttatgTACACCTGGCTTTTGTGGGAGGAACAAAGATTTTGCTGTAAAAAGACTTATTTTTTTGGTAAAACGTTGTACACAGGAGCTGACTTACACCCACTGCTGGGCTTATCAAAGGAGATGGTTAATAAGGAGTCCATGAAAACAACTTAAGGATAATCTGCCTTGATGGTGGTTTTGCGTGTTTAAGTGCTTTAACTATGAATCGTCTACCTTTTTCTTTACTTGCCCCCAGTGATGTATGAATGGGATCTACTGGTTTCTATGCAATTTAGACTTGTACTAAATCAACTTTAATGAGACTTGAAACTGAATCaattgaagtaaaaaaaaaaaaagttgggtcAAATTTACATAATTGTTGCCAGATAATACGTTTGCAACCAGGGTCTGTTTTGAAAACACTCATTATTCCGGCATTCAACAACTCTGACATCTATTGGCAGCTGcagaatttttttaatgtttttaatgtgtgacACAACCAAATTCACATTATCTTTTCCACAACAGCTTTGCTTACTCAAAGTGTGTCCTGAATTGGATTTTCCAAGAGCATAGTGTACAATGCAATGCTTTTGTCAGAACACCAAGGATgacagtttaaaaaagaaaaaagaaaaaaaggtttctCCTTGGAAATGAAGAAtccttttgaaaaaatgtgtagTTAATGGACCAAAACATGTAAAACTATTGGCCAAAGTATAAGTATATTCACTACATCTGTTTATTAAACTAGAAACTGATAACACATGAAGGCATACATAGTAAGGGCGGGGCACAGGAAGTAGGGAAACCCTACCACCACATGTGGTTCAAGCATGTGCTCCTTGGCTCTCACCTCCTTGTGGCAGAAATAAAAGATCACACTAGAATTGCCCTTTAAATTGCAGAACCTAAGATGAACTTGGACCTAAGAAAGATGGTCTGCGCCGGTTAAATGACGATGTTAATTATCAGTTGAAGGTTTGTTGGACAAGGGAGAAGTGTTTGTTTGAATTGAAGGAAAATATTGTTGACAGTTTTGATGTTCTTGCAATGCGCACAATCATTTTATCATTTTAAGTAATGCAAGTCCTGTTGAACATACAAATAATTGATTGATTTATGTAATTTTATATCAAAGCTAATGTTGTACAGTTTAGATTAGTGTTTAGGCAAAATCGGCATTTCAACTCGATACAGCCTATCTCACTGCAGATACGACACATTTCCTTTCAAATGAATATACACTTTTCGTGTTGTCTTTTGAGTCCGAAAACATCAGACATTGTCTTCACAATCAATATGTTTGCACAAATGCATTAAAAGCACCACATTTGATTCAATGTTAGAGTCTCAGTTCTGTGGAGCTACTGTTGTAGTTTCTAAATTGCACTACTGGGAGTAGTTCAGTTGAAGTTCAGCCTACCCAGACAGGTTTTTTAAGTCAACACGCACAACTGTACATGGTGTCACTGTTATGactttgtctttttctcttaGTGTGTGTTCATTTCAATAAATGTATGATCATTCGTATTTATTGTAAGAGGCAAAAGTGTATAATTTAAAAACTAGTTTTGAAGGCTTTTCTGTTTCATTAAGGTAAATAAATATGGCTTATTTTCTTGCTATCTTTTTGATAATTGTTAAAAAGACTGTCATACTTGTCTCATGGAGGAGGTAGCTGCAAGGTAGCGAACACAGTGTACATATGCAGTGTCTTCCAATGTTTCTacgtgttttttttgcaaatgggACTTATGTATTAAAATACTTTTCTTTAAATGGAAA

Function

symbol description
ahrr Predicted to enable nuclear receptor activity and transcription cis-regulatory region binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II and positive regulation of protein sumoylation. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: aryl hydrocarbon receptor repressor

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0042221 response to chemical biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09094 AHRR, AHH; aryl hydrocarbon receptor repressor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789686.1 True 4607 mRNA 0.46 9 8639541 8712753

Neighbor

gene id symbol gene type direction distance location
snx16 snx16 coding downstream 141527 8476127 ~ 8498014 (-)
LOC120552161 wwp1 coding downstream 221553 8378019 ~ 8417988 (-)
LOC120552414 LOC101468454,LOC102290369,LOC102196333,LOC103482264,LOC106914574 coding downstream 267204 8363474 ~ 8372337 (-)
LOC120552411 LOC103369038,LOC104941959,LOC108248835 coding downstream 278168 8347956 ~ 8361373 (-)
LOC120552407 cpne3,LOC104924704,LOC102292005,LOC108248831 coding downstream 292290 8334787 ~ 8347251 (-)
LOC120552044 anks6 coding upstream 11696 8724449 ~ 8734819 (-)
ncf2 ncf2 coding upstream 55467 8768220 ~ 8779822 (-)
olfm3a olfm3,LOC103369880,LOC108250954 coding upstream 316370 9029123 ~ 9083108 (-)
col11a1a col11a1,LOC103148006 coding upstream 374398 9087151 ~ 9173024 (-)
LOC120552183 vav3,LOC102780841 coding upstream 902087 9614840 ~ 9726073 (-)
G218522 NA non-coding downstream 4856 8634100 ~ 8634685 (-)
G218503 NA non-coding downstream 43137 8547773 ~ 8596404 (-)
G218469 NA non-coding downstream 105997 8522950 ~ 8533544 (-)
G218477 NA non-coding downstream 179831 8459498 ~ 8459710 (-)
G218473 NA non-coding downstream 203592 8435049 ~ 8435949 (-)
G218561 NA non-coding upstream 24391 8737144 ~ 8739902 (-)
G218563 NA non-coding upstream 31094 8743847 ~ 8744309 (-)
G218568 NA non-coding upstream 36840 8749593 ~ 8750452 (-)
G218571 LOC102785356,LOC102298937,LOC101486668,LOC102080962,LOC102192826 non-coding upstream 40758 8753511 ~ 8754861 (-)
G218587 NA non-coding upstream 77075 8789828 ~ 8791965 (-)
G218471 NA other downstream 208611 8430464 ~ 8430930 (-)
G218453 adarb2 other downstream 443662 8194929 ~ 8195879 (-)
G218085 LOC107687935 other downstream 2938965 5700229 ~ 5700576 (-)
G218019 NA other downstream 3602837 5027505 ~ 5036704 (-)
G217837 NA other downstream 4698212 3936010 ~ 3941329 (-)
prkdc prkdc other upstream 85028 8797781 ~ 8851726 (-)
LOC120551928 LOC104943218,LOC103369878,LOC100710535,LOC102301415,LOC101469805 other upstream 244656 8957409 ~ 8970638 (-)
cngb3.1 LOC103363254,LOC102786718,LOC108428960,LOC104948783 other upstream 1120709 9833462 ~ 9848241 (-)
G218950 NA other upstream 1864646 10577399 ~ 10669527 (-)
LOC120552013 NA other upstream 1891567 10604320 ~ 10615221 (-)

Expression


Co-expression Network