LOC120552044 (anks6)


Basic Information

Item Value
gene id LOC120552044
gene name anks6
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8724449 ~ 8734819 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789687.1
ATGAATTTTGGGGTCCCCGCTAATTCGCTGCTGCTTTTCCGTGCCTGCGACGAGGGGGACTATGAAACCGCCCGGGGGATCCTGGAGCCCGGAGCCTCGAAAGAGTCCGGGCGGCAGAGCAGGCTGCGGTCAGAAGCGGGGTCGGAGTGCAATACCGCGGACATGTTGTCTCTGGTACCGGTGGACTGTACGGACGAGGAGGGCAACACCGCCCTACAGTTTGCGTCAGCCAGCGGTCATGAGAACCTGGTCCGGTTTTTGTTACGAAAGGGGGCCTCGGTGGATAGCCGAAACAACTACGGCTGGACCCCGCTGATGCAGGCTGCTAGGTTTGGCCACCTGACTGTCGCCCACATCCTGTTGGAGAACGGGGCAGAGATCAATGGACGGAACAGGCTAGGTGCGAGTGTTCTGACTATGGCGGCCCGTGGGGGACACACTCATGTAGTCAAGTTACTCCTGGAGAGCGGGGCCTACGTTGATGACTGTGATCATCTGGCTGTTGCTGCGGAGGCAGTCTCAaacggcaacaacaacaacagctgcagCGCGGCTGGTTTTAGAGGTAGTGAAGGCTGTCCAGGAGGGGGCAGAGAATTCATGGACATCATAGCCCTGATGGTGGCATCTCAGCATGGCCACGAGGCCTCAGTGCGCCTGCTGCTAGAATGGGGCTCTGATGTCAACTTTTCCCAGAAGACCACTGGCTGGGGACCACTGATGGTGGCCACCCTCAGCGGGAAGGTGGCTGTGACTCAACAGCTGGTGGAACGTGGAGCTGACCCAGACAGGGTCAATGTTCTGTCCAAGACGGCCTTTGAACTCGCCATGCAGCTTAAACAGAGAGACATCAAGGCCTATCTGGACTCCATCACCACTGTCCGACCACAGACAGATGACGATAGAAGAAGACCAGATGTGTTCAGTGCTCTCAAGTTGGGAAATTCCCAACTAGTCAAGGAGATCTTGGAGGAGGATCCTACTCAGGTGAATTCCTCCAATCAGGAGGGAGCGTCACCTCTCATGATGGCAGCAGTGAGCGGTCAGCTAGAAGTGGTGCAGCTCATGGTGGAGAAGAACGCCGACATAGACAAACAGGATGGGGTCCATGGGTGGACAGCTTTAATGCAGGCCACCTATCACGGTAATAAAGACATTGTCAAGTACCTGTTGAGTCAAGGGGCTGATGTCAACCTTCGGGCTAAGAACGGATACACAGCCTTTGATTTGGTTATGTTGCTGAACGACCCAGACACTGAGTTGGTGCGTCTGTTAGCATCCGTGTGTATGCAAGTAGACAAGGACAAGTCGAAACACCGCGGCAGAGCCTTAATGACTCGCTCCAAAAGCCGACAGTCCCTCAACAACGTCCCCGTGCCGCCTGACGACAAGGGAGGCCTTAAGTCCTGGTGGAGTCGGATGTCCAATCGGTTCCGGCGGCTTAAGTTGACTCACACCCTGAGGCACGGCCTTTCATCCAACCGCCTGGCTCCATTTCCAGACGATGCTGAAACTTCATTGGATGCCACGATGAAGGCCAATAGAAAGCCTGCTGCGGTGTCCAATGGGGCGCTGGCACCATCCCCTGCCCTGGGGGCGAACGACGCCAGCACTGCCTGGGCGGTCAAGAGCAAAGATGCGGGTCTGTGCAGGGCATCGTCAGAAAAGGAGGACTTTCTTATAACCACAATGCTCCGAAGTGGTGCGCCATTGACCCGGCTGCCCAACGATAAACTAAAAGCCGTGATCCCTCCCTTCCTGCCTCCGTCCAACTTTGAACCGTGGAGCTCGGACCGCTCGCGTCTCCTCGGGGAGGGAAAGAGCGAGGCGCCCCGCCTGCCCATGCCCCCCCAGAGGAAGCTGAACAGCAGCGGGAACTCCGATAttACGTCTATCAGTCGTGTGGTCAGCAGGTCCATTAAGTTTCCCAGCATCCCCAAGGGGCCTTCCTCATCCTCTCCTTCCAACTCTGGTCACTACCACTCCCCCCACTCCTCAGGAGGCTCCAACGGAGTGGCAGGGATCAACCGGGACTCTCACAACCGTTCAgGGGGCAGTGCAGACAGTGTTCTGTCCCAGATAGCTGCCCAAAGGAAGCGAGCAGCAGGCCTGATAGATGTGAAGGCCCAGGCTCCAGACAAACAGCACAGCCAGACACAGAGCCAACCCTCACTGCCACCCACAGCACCCGGCCTGCCGCTGCCTGAGATAAGCCTTCCTGACATCCACTCCCACCCCAGCCTCGTGGCTTCCGACATCCACTCAAGAAggAAGATGGAGTTGAAGAAGAGACCTCAGTCAGGGAATTCCTCCACATCCAAGAGCACGTCGCCCACTCTGACCCCGTCTCCTTCCCCGACGCCCAAGCCTCCCACCGGGCCGGGAGACTCGCTGTCCTCCAACTCTTCCCATCCTCGCTCCAAGAGCAGCGGCGGCTCCAGCAGTGGAACCATAACCGATGAAGatGAGCTGTCTAGTATTTTGAAGAAACTGTCCCTCGAGAAATACCAGCCCATATTTGAGGAACAGGAGGTGGACATGGAGGCATTCCTGACTCTAACAGATGGAGACCTGCGGGAGCTGGGCATTAAAACGGACGGACCCAGACAACAGATCTTGGCTGCCATATCAGAGCTCAATGCTGGAAAGGGCCGAGAAAGGCAGATCCTTCAAGAGACCATCCATAACTTCCAGTCTTCCTTTGGTAGCAGCGCCAGTAACCCCCGACAGCCAGGCCAACCACGCTCACCAACGGGTTGGATGAGACACCAGGTCCGTTCCTCCAACAAAAGGTAACGCAGCAGACCTGATGCCCACCAGGGAGTACACCAAAGGTACTTAAAATAAGAGTAAAATGCCGGTGACCTCTAGCCAAGGCGGGAATAATATGGACGCCAGATGTCCCAGACAACTAGCGGCGTTAGCAGAGCAAGAGGATGCTGCAGCAAAACGACCAACCAGACCCTGATAACCTGCCTCCAGGCACAAACTGCATTCAAGTATTCTTCTTATGGATCCTACAGCAGGAGAGGTGTGACAGGGCTGGCTGAGTCCAGTGCCCTGCTGCTATTCGACAAAGCACACCATGTGTGGCAAGTGATATTGTTTTGCCACAGTGATACGGTTACCACGTCTACTGCTAATGCAGCGCATGGGTTACGCAGAGAGTTCTGTAGGACGAGAAGATCAAATACACAgcagagggggggagagagccGAGAGAGAGATTTTAATTTTATCTGAAAAGAATGTGAGAAGTACAGCATCATGTATTGTTTGTAATGACATGGCAAAGTAAGTCGggagaacagaagagagagattCTGAGTATAACAATAGAATACAATAAAACAGAGACTAGCcagtagtgctgtcagttaaacgcgttattaacggcgttaatgcaaacccattttaatggcgtacatttttttatcacgagattaacgttctttttggcctagcaaacttttgagtttctct

Function

symbol description
anks6 Acts upstream of or within pronephros development. Predicted to be located in cilium. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in nephronophthisis 16. Orthologous to human ANKS6 (ankyrin repeat and sterile alpha motif domain containing 6).

NR:

description
PREDICTED: ankyrin repeat and SAM domain-containing protein 6 isoform X1

GO: NA

KEGG:

id description
K21415 ANKS6; ankyrin repeat and SAM domain-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789687.1 True 3483 mRNA 0.55 18 8724449 8734819

Neighbor

gene id symbol gene type direction distance location
LOC120552041 ahrr coding downstream 11696 8639541 ~ 8712753 (-)
snx16 snx16 coding downstream 226435 8476127 ~ 8498014 (-)
LOC120552161 wwp1 coding downstream 306461 8378019 ~ 8417988 (-)
LOC120552414 LOC101468454,LOC102290369,LOC102196333,LOC103482264,LOC106914574 coding downstream 352112 8363474 ~ 8372337 (-)
LOC120552411 LOC103369038,LOC104941959,LOC108248835 coding downstream 363076 8347956 ~ 8361373 (-)
ncf2 ncf2 coding upstream 33401 8768220 ~ 8779822 (-)
olfm3a olfm3,LOC103369880,LOC108250954 coding upstream 294304 9029123 ~ 9083108 (-)
col11a1a col11a1,LOC103148006 coding upstream 352332 9087151 ~ 9173024 (-)
LOC120552183 vav3,LOC102780841 coding upstream 880021 9614840 ~ 9726073 (-)
nrros NA coding upstream 1032773 9767592 ~ 9777716 (-)
G218522 NA non-coding downstream 89764 8634100 ~ 8634685 (-)
G218503 NA non-coding downstream 128045 8547773 ~ 8596404 (-)
G218469 NA non-coding downstream 190905 8522950 ~ 8533544 (-)
G218477 NA non-coding downstream 264739 8459498 ~ 8459710 (-)
G218473 NA non-coding downstream 288500 8435049 ~ 8435949 (-)
G218561 NA non-coding upstream 2325 8737144 ~ 8739902 (-)
G218563 NA non-coding upstream 9028 8743847 ~ 8744309 (-)
G218568 NA non-coding upstream 14774 8749593 ~ 8750452 (-)
G218571 LOC102785356,LOC102298937,LOC101486668,LOC102080962,LOC102192826 non-coding upstream 18692 8753511 ~ 8754861 (-)
G218587 NA non-coding upstream 55009 8789828 ~ 8791965 (-)
G218471 NA other downstream 293519 8430464 ~ 8430930 (-)
G218453 adarb2 other downstream 528570 8194929 ~ 8195879 (-)
G218085 LOC107687935 other downstream 3023873 5700229 ~ 5700576 (-)
G218019 NA other downstream 3687745 5027505 ~ 5036704 (-)
G217837 NA other downstream 4783120 3936010 ~ 3941329 (-)
prkdc prkdc other upstream 62962 8797781 ~ 8851726 (-)
LOC120551928 LOC104943218,LOC103369878,LOC100710535,LOC102301415,LOC101469805 other upstream 222590 8957409 ~ 8970638 (-)
cngb3.1 LOC103363254,LOC102786718,LOC108428960,LOC104948783 other upstream 1098643 9833462 ~ 9848241 (-)
G218950 NA other upstream 1842580 10577399 ~ 10669527 (-)
LOC120552013 NA other upstream 1869501 10604320 ~ 10615221 (-)

Expression


Co-expression Network