LOC120552069


Basic Information

Item Value
gene id LOC120552069
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 4221909 ~ 4250306 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789732.1
gaaaaacacagaagagatgtgtcacctttttcagcccttctgagtctgcagCGTCTTTATATGGTAGCCAGGAGTGAGGACGGTCCAGGAGTTTCTGAGGTGGCGCAGGTCAAGTCCTGCTCTCAGCAGGTGGAACAGCTTCAGCACAGCAGCTTCAGCTCACTCTGGACCACTCAGTGTAATGGACGTACTCAACCTGTGGAATGATGACCCAGAGGAGGTTCTCTTGGACCTGGGCTTTGGCTGTGATGAACCTGACCTCTCTGGACGCATCCCGGCTCGATTCATCAATCACCAGTCTCAGGCGAAAGGAATAAACCTCCAGGTGTTTCTGGAGGCCCAGAAGAGCCGGCTAGACCTGGAGAACCCAGATGTCAGCAATCGTTTTAGACAGCTTGAGGTTCTCCAGCAGGTAACTACAGCATTCTCGTCCTTGATGGGGTCTTCCTCGTCCTCCCCTCTCACAGCACCGCTGGGGAAAGCCCTGACTCCTGAGGCCCGGGAGAGGAGGCGGCGCATGGGCATGCTGCTCAGACGAGCGTCAAAGAATTCACTCAGCCAAATACGCAACCCTAAAACCCAGGACCTGACTACACCTGCTACCACCTCTTCTCCCTGTGCTACGCTTGAGCCACTGCAACCTCCACTCAGTCTTGGAGACAAGAAAGTCCTCTTAAAAAGAGTCAAACCTGGACTTTCGGAGACTGTGTGTCTGAGTCCTCTGGCAGAGGAGCTAGGTGCCGTTCCAGACCCTCAGCCCCAGCCTAACATGGCCCCTTTGATAGTTCAAGAGGGAGCACTCAGACACTGGCCAATGACGGAAGCGCACCCACTGACAGCCAACACTTTTTCACTGAGGCGGAAGAGCCCAGGGCAGGCCAGGGAATCATTTGAAATGGAAGAGATCCACAGTTTTGATGAAAGTAGTGTCACAGGGAGCTACACAGGAGGAGCAGAAAATTTAGCGCGGTGTGTAATACGGACCAACAGCTGCCAGTCTGACAGCAGTGGTTTTTTAGAGGAGCCCTTCATCCCCTCGCTCTCTCAGCAGGCGTCACCGGGACCCGATCTCATCAAGGCTCTGTCGGGCCTGTCAGGCGGGAGCACTGACAGCCAGAGCAGTGAGAGGCCGGGCTCCCCCTCTCCTTCGCCTCTTACCCCTCCTCCATCATCTCTGACCTCTTCTGGAGTTGACAAATCTTTCCTTTCCCCACCCAGTCCTTCAGCAGAGCCTTCATTAATCTTCAGCCCTTCCCCATCTCCTGTCTCATTGTGTCCTCCAAAGTCAGACCTGCAGAGATCTCCAGGGACGGAGACAGCACCAGATCAGGATCAGTCTCCACCTGCTTCACCGCCTGCATTAGTGTGCGAGTACCTTTCTCCTCGCTCTCCCTCGCCCGGGTTACAGAACAAAACTCACTCCCAATCTACAACTCTCCCTTCACCCGCCGCCTttacctctctctcctctacatCTTCCCCCATGCAACCTGCCTCATTGATTAGAGGGTCAGAGGAGATTAAAACTGAGGACAAGGATACTCCATGCCCCCACCTCTCTACTCTATTTTATGAGTCTGAAGGCCCAGCATGCTCTACCTGCTCAAGTGTCCCTCATGCTGCCTCAACTCCTTCTCCCATTCCAAATTTGGATTGTCTGTTTTCTGCGTCGATTGCCATGCCTTCTACACAGCCTGATTCCTCTGGGAGTCCAGTGAACACACAGTCAGAATGGACTGATGTAACTTTGCATGGAAACTCCCTCTCCGCGTCTTGTGGTGTATCATCTCTGCTTCCCTCTTCCCCTCCCGGTTTCCATTGTCCATCCTATATAGCATCTCCCCCACTTGTTGAGTCCCTCTCACAGAGTCCAGAAAACAGGCAAAAAGATTCCCTTTTCCCAGACTCAGATGGAATAGGCCTCTCTGATCCACCGACCAATACAcagaaaaaagggaaagaaataCCCTCCACTGTCTCCTTGCAGTTGGACAAGGACAATCCCTCAGCTCTATCCTCTCTCATTCTGGACTCCTCTGAGTTTGGGACAAGTTGTCCCACGCTGCCCTGCCGTTCCCCTAACCCTTCCATTTCAGTTTGTCAGTCTGCCATGTCATCGCTATCACATGATTCAGATGGTCTGATAGATGCAGCTGTTGGAAGAATTTCAGACCTGACGGAGCAATCCATCTCCCAACAGGACAGACCGTGTTCTCATGATGACACAGATGACGATAACACAGACCCTGCTCCAGCCTCTCCTGTCCAAGATGTTATTAATTTTAAGATGAAACACCTTTCCTTAGACCTTGAGGATACCCATCAGAGGAATGGAAAGGGAGAGGTTGAGAGACATACTGACACTGTGCAGACTCAAGAGGCTGTTGTTTACATCACAGATACAGACAGTTACGCAGGCCTGTCAGAAGGTTCTAGATTAGTCTCTAAGGAAGTATGTAACCAAACCGAAATAGATCCACAGGTTCTGCCCTGTAGTTTGCATGATGAGCTTTCAACTGGAACCCAACCGGAAGAGTGTCAAAGGGAAATGAATGACTCAGAAAGTGAATCACTTAGAAGTTCTTCAGTTTTACCTGAAGATGTGCCAGAATCACACAGTAGAACTGAAGTGGAACCAAAGGATCTAATTAGGATTGAGAGCTTAGATCAGGTATTTCAAACCTCAGTGGATGGCTCCGAAAGTGAATATGGAGACATAGATGCATTTTTTCAGCAGCTTGATACTGAAGGGCGCGTCTATTGGGCAGAACCCATACAGATTTCCAATCCATCCAGCTTTGAAACCTCAGACGGATCTCCTGGGAATTCTCTGTTGCCTAGTGGCCCAGCTGTTCAAGATTCATTTTCATCCACAGGCAGAGCTAGGTCTTTATCTTTGTCATCCTCAACAACAAtggacactgaccaaacgtcAAGAAATGCAACTGCCTCCTCAGATACACCCTCCTCCTTTACCCTAGCTCCATTCCCATCCCCTGCCGCAACCCCAGAACGCAAGCCATCAAGCCGCTCTGTTTCTGTCCAGATGTCTTCATCCCTATCTTCTCATATTGTCCACAGGAAGGATGTTCCCTTCATGACCGACTCAAAACGCACCCTTTTCACTAGTGttctccctttggacacctccACCCCTTTCCGTGCTGTCCAGTCATGGACAGACCTGCAGATTCAACGAAACACTCTCACCAACAAGTTATCACATGGGGCTCTTTATACTGCCCCAAAGGAGGTAACCGTATCCACTGGTGCCTCAGAAGTGACACCTGCACTGAACTTCTCTTCATCTCCGTATTTCCCTCTCCTGTCACATGATTGTGTCCCTTGGATGGAAAGAAACGACAGCACCATGTCAGTGTCTGTGGATAAAGGACTGTGGcctgatgaggaggaagaggatgggATTGGAAATGAAGATGAGGAGATGTTTTGGCAGGGCAATCACACAGCCGCAGTGGCATGCTGCTGCTCCTGTGACCATCAGTGTACCCAGAACACTCTGGGATACACTCCTTACTCTCTGGATGAGTTGGAGGAGATGATGCTGTGTGTGCAGCAGTTTCGCTCGGTACTCAGCAACATGGAGGAGAAGCTCTCTGAAGACCAGGCTGCAGTTTACAGTGTTCTCTCTGAGCAGGACAGggagaGTGTTCGGGAAATAGAGGAGCTGCGGCGAGCAGTGAAACAGGAGGCTGGAGAGCTCGAGATGCAGTTGAATGAACTGGCACATCACTATGACGACAGCTTGAAAATGAAGATGCACAGACTGTTGGATGAGCAGTCCCTGCTCTGCTCTCAACTCAGAGTCTTTCTGCCTGAAACGGTGCCCACAACATCCAGCCCCGCCCCCCACAGGACAGTAGCCACTCAGTGCTGTCTGCTGCCCGGCATCTCGCCAGCTGACGTGCAGAGCGGTCACATCTCTGCCTGGAGCACCTGGAATGCTGACTCCCGTAGACAGTCACCGCCTGGATCAAAGTGCATCTGTGAGGGCCTGGGCTGTTCTCCCACTAAGACAGACAAGCTGGACATGATGGGCTTCCTCCAGAGATTGAAGGAGTCTTTGCGTCATTCTTTGAACACCGACTCGTTGGAATAAAAGGTGTCCGCGTGCTGCATGGGGATTGCATCTGACTCCTGAAAATCTGAAGTTTCCTGTAGTCTTCCATCCACTGAAGAATATGCCTTATTTTTTCGTATTTACAGTTTTGTGATAAATGTCTCACATGTGACTGTAGAACCACTACAAGCTGCATGACATGCAAACAAGAAATATGTAATAATCCTAGGACCTAAAACAAAAAGCAATAGTAACAGCACAGGGTATGCTGTTTGTTCATTATTTAAAATTCTTATTTACAAGGTAAAATGGAGGATGTATTTAATGTATGTTATTACACACTATGCCTCTGCTTAGTGAATGCACAATGCTTCATATGAATAATTGCACTACACTCTACCTAAGAACCGTGaaacatgtttgtgttgttgttgtgttcaaGTACTCCGTGAGTCTTTGTTTCATTGTCTAAAAACACATTGGGGCTGTCGTGCTGCAGCACACACTTGAGAGCAGGATGTACCAATTACCAGAGTACAATCGCTCATCAAGACTTCAAAAGGCTTTGATTTATTTGGAGCATCacaagtgttttattttgtaggaaACAGAGCCAATATAACTCACCTGCCTTAGAAAGAACATGACCAGAACCATACACAATGTCACTTTCCTAACAATTAAGATGATATACTTGTGCAATATCAAAAAAAGTGTCaacgtttttattttcttaatactTCTTTGGTTTTTGGTGAGTGTAATGATGCATGCATTTTATTGGCATAAACAAGGGCTGTAACTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789732.1 True 4888 mRNA 0.49 13 4221909 4250306

Neighbor

gene id symbol gene type direction distance location
trnas-gcu_20 NA coding upstream 157834 4063994 ~ 4064075 (+)
LOC120552545 NA coding upstream 286783 3900951 ~ 3935126 (+)
arhgef4 arhgef4 coding upstream 348607 3714311 ~ 3873302 (+)
steap2 steap2 coding upstream 583876 3570272 ~ 3638033 (+)
abcd3a abcd3 coding upstream 788288 3401968 ~ 3433621 (+)
LOC120552080 LOC107732049,LOC100535932 coding downstream 63045 4313351 ~ 4323124 (+)
trnaa-cgc_15 NA coding downstream 143198 4393504 ~ 4393576 (+)
trnas-gcu_24 NA coding downstream 160574 4410880 ~ 4410962 (+)
trnas-gcu_25 NA coding downstream 162244 4412550 ~ 4412631 (+)
trnas-gcu_26 NA coding downstream 164616 4414922 ~ 4415003 (+)
G217795 NA non-coding upstream 280584 3940796 ~ 3941325 (+)
G217788 NA non-coding upstream 394851 3826556 ~ 3827058 (+)
LOC120552544 NA non-coding upstream 513190 3705024 ~ 3708719 (+)
G217769 NA non-coding upstream 555416 3664861 ~ 3666493 (+)
G217768 NA non-coding upstream 557146 3664357 ~ 3664763 (+)
G217925 NA non-coding downstream 152743 4403049 ~ 4403369 (+)
G217927 NA non-coding downstream 186117 4436423 ~ 4436735 (+)
G217956 NA non-coding downstream 273288 4523594 ~ 4523896 (+)
G217969 NA non-coding downstream 404959 4655265 ~ 4655474 (+)
G217964 NA non-coding downstream 509314 4759620 ~ 4762250 (+)
chchd7 chchd7,LOC102799933 other upstream 517534 3670420 ~ 3704375 (+)
G217723 cnn3 other upstream 678124 3495450 ~ 3543785 (+)
LOC120552392 mtpap other upstream 988087 3220615 ~ 3233822 (+)
G217606 svil other upstream 1200267 3006283 ~ 3021642 (+)
G217377 NA other upstream 2546509 1669162 ~ 1675400 (+)
ppp1r17 NA other downstream 5742 4256048 ~ 4261598 (+)
trdmt1 LOC104946219,LOC101070638 other downstream 261407 4511713 ~ 4522706 (+)
LOC120552660 NA other downstream 3110300 7360606 ~ 7373347 (+)
LOC120552265 LOC101478037,LOC102216221,LOC100695799 other downstream 4272993 8523299 ~ 8596356 (+)
G218441 LOC101478037,LOC102216221,LOC100695799 other downstream 4300477 8550783 ~ 8606578 (+)

Expression


Co-expression Network