LOC120552070 (plppr4,LOC102778844)


Basic Information

Item Value
gene id LOC120552070
gene name plppr4,LOC102778844
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 4570417 ~ 4613727 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789734.1
CCGTCCTCTACCTGACAGCTCATCGGAAGACATGCACACAACCGATCCCCGGGCTTCCCGCGAGTAGAGCTAAAGGGCCGCTCTAGCGGGTCTGTGTGTACCGGGAGTCCTGGGCTGGACACTGAGCCGCTTCCCGCTCCGCACGGCACGGCACGGAGGCATGGCGCGCTCCTGATCCCGGCAGGACGCCCGGACAGCTCGGCTCGGTTCTTCCCTCAGTCACATCTTGGATCTCTTTCGACACTGAGAGGCCTGACCATGTCTGCGAGAGAGAAGGGGATCCCGACCAAAGACAGCGTCAGCCTGCTGCCCTGTTTCTATTTTGTAGAGCTGCCGATCCTGGTATCGTCTGTGGTCAGTCTGTACTTCCTGGAGTGGACGGATGTGTTCAAGCCGGTGAAGTCTGGCTTCAACTGCCACGACCGCAGCCTGAGCCTTCCCTACATTGACCCCAACCGCGAGGTCATCCCCCTCCTGATGCTGCTCAGCCTGGCCTTCGCCGGACCCGCCATCACGATAATGATTGGAGAGGCCATCTTGTTCTGCTGTCTGTCTCGGAGGAAGAGTGGCGGCGGGGTCGAGGCCAACATCAACGCCGCCGGCTGCAACTTCAACTCCTTCATACGCAGAGCGGTTCGCTTCGTTGGCGTTCACGCTTTCGGTCTTTGTGCCACGGCCCTCATCACTGACATCCTCCAACTGATGACGGGCTACCCGACACCCTACTTCCTCACCGTGTGCAAACCCAACTACACCACGCTCAACGTCAGCTGTGAGCAGAACCCCTACATCCTGGAGGACATCTGCTCGGGGGCCGACTCTGCAGCCATCATTCAGGGCAGAAAATCCTTCCCATCACAGCACGCTACCCTCGCGTCCTTTGCCGCTGTCTATGTTTCGATGTACTTCAACAGCACTTTGACAGACTCATCCAAGCTGCTCAAGCCCCTACTGGTCTTCTCCTTCATTATCTGTGCCATCATTTGTGGCCTGACCCGCATTATTCAGTACAAGAACCACGCCATCGACGTCTACCTGGGCTTCCTGCTGGGAGGAGCCATTGCTGTCTACCTGGGGTTGTATGCAGTCGGAAACTTTCAGTCTAGTGAGGAGGCCAGTGTTAGTCCCCCTCCCATGCTACACCGCCCCCCCTGCTCCTTGCCCCACATCAGCCAGGAGGCCGTACTCCACCACCTTCAAATGAAAGCCAGCATGGCAGGGGAGCCCGGCATGCCCACCTCCCACTCTGAGGGCCTGCTCCACCGAGGCCTTCCCCTGCAGAGGCCTGACGACTGTCTGCAGCGTTCCAGCGCAGATGTGGAAGTGATCTCCCCCCGCAGCCCCCACAGCAAAGACGCCATGGCGACCTTCAGCCACACGCTTCCTCGGGTCCACACCCCCCAGGCCATGGCAGCGTACGAGGAAGCAGCCAGACGTCACGCCGCAACCCTCCACCATGCCTCCATGGACTCCAGCCGCTCGAAGCAGCTTCTGTCTCAATGGAAAAGTAAGAACAACAACCACAAATGCTCCCTGCAGATCCCTGACTCCTTCTCGTCCTCCGTGGACTCGTCATCGGGCCAGTCCTCGCAGCATCCTCACCACCACGGCAGCATGGAGCTCCGATCCAGCTCCGAGCCATCGGCTATGGGCCTGAACGGAGGCTTCGATGCTCACGCGTACATGTCCAAACTGGCCACAGGCGCCAGCACCACCCTGCCCAGCAACTGCAGCGGCATCACCGGAGGGGCCAGGATATCCATGCAGTCCAGACCTGGGTCTTCACAGCTCGTTCACATACCAGAGGAAGCCCATGAGAATTACAACCCCACCTCCCCGAGGACggggggagaaggagggagcgAGGGGATGTCGACAGTAAATAGCACAGTTCAGGCAAACTGGCAACGGGCGGTGGAGAAGACCGCAGCCTGCAAGACTAACGATAGTGGGCACAACAGCCAGCCGCGACTCATGCAAGTCATTGCTCTTTCCAAGCAGCAGGGCCTGCTACAGACCCATTCCAAGAGCTTAGACGAGGGCAGCGTGGGCTGCGGCGCCATCGGGAGCTGCCAGGGCTCTGCTCGCTACAGGGCACTAACTGACCAAGACCCCACCAGCATCACGGGGCCGAGCTCGTTGGGCAGCACCACAGGCAGTATTTCAGGGAGTACTGGAGCAATTGTCAGAGTGGAGGCCCACCCTGAAAACAGACCGGTGATCCAAGCACCGTCCACAGATGGGAGCGGATCATGGAGGTGGCGTTCCCTGGACCATGGCACTGGGGCTGGTGCAGGTACAGGGACCagtggagcaggaggaggagttgGGAGTTTGAAGCAGTCCTTCGAGCTCAACGATCTAAACCGAGACTCGGAAAGCCCAGACTCAATACGTGAAGGGTCCATTGACAGGAAGCGAGGCAATCACATCGTTACCACCACCGCCACCGTTAGCACCCCGCCCATAGTGACTGTTCACACCCAGAACAATGGCCAGTCGGAGCAGAGGCTCCACCCGCAGGGGCTTTCCACCATAAGGGTCACTCCGGGGGATGGTTGCGGTTCTGGATCTGGAGGAGGCGGTggcggaggaggaggtggagagagCGCATCAGAAACCCCCTCCGTCGCTTCCAGTCGGGAGTCCACGCTGCGGAGAAAAGGCAATAGTATCATCCTGATTCCAGAGCGAGCCAACAGCCCGGATAACGCCCGCAACATTTTCTACAAAGGAACGTCCATAACTCCTGTTTTCAAGGACTAACGTACGGAATGACTGGAAACTTTGGAGAAGATGGAGCTAATAATGCAAGAAAGCTAGATTTTTCAGAGAACCCCATATCTGTGACTAAGTCAGTATTACCTGCCACTGTATATATCATAATAAGGTTTTATCCAGCATGAGAGTTTTTGTACGTGTTAACACtaaatcacaaccttttaaGTGTTGTAGAAATAATCACTGTGTACTTTTGTGGTCACTCCTTAAGAAACCTATTGTAATGTCCATGATGTGCCAGTGCTTTGGGGACAGGAGAACCTTTTATAAACAGTTCTGTATGTTTTGGATGTaaatcatcagaaaaaaagaaagtagcaCAGTAACTGTAGCAAACTACAGCAAACTAAGTGTATCATAGCTGTGGAGCCAGTGTTTACTCCCATGCACTGAAAATACTGTGTATGTTTGAAAAGGGTGCTACACCTGAAAATACTATTTACTATACGACATACTGTATCATTTGAATAGATAAAGAATGAATTATTTTAGAGTAAg

Function

symbol description
plppr4 Predicted to enable lipid phosphatase activity; lysophosphatidic acid phosphatase activity; and phosphatidate phosphatase activity. Predicted to be involved in several processes, including axonogenesis; phospholipid dephosphorylation; and phospholipid metabolic process. Predicted to act upstream of or within inner ear development. Predicted to be located in plasma membrane. Predicted to be integral component of postsynaptic density membrane.

NR:

description
PREDICTED: phospholipid phosphatase-related protein type 4

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K19582 LPPR3_4; lipid phosphate phosphatase-related protein type 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789734.1 True 3279 mRNA 0.56 7 4570417 4613727

Neighbor

gene id symbol gene type direction distance location
LOC120552074 NA coding downstream 38177 4525301 ~ 4532240 (-)
rsu1 rsu1,LOC102787280 coding downstream 59808 4466851 ~ 4510609 (-)
c1ql3a c1ql3,LOC102786996 coding downstream 114888 4433632 ~ 4455529 (-)
trnas-gcu_30 NA coding downstream 144037 4426299 ~ 4426380 (-)
trnas-gcu_29 NA coding downstream 145717 4424619 ~ 4424700 (-)
trnas-gcu_31 NA coding upstream 183754 4797481 ~ 4797562 (-)
trnas-gcu_32 NA coding upstream 185263 4798990 ~ 4799071 (-)
trnas-gcu_33 NA coding upstream 189978 4803705 ~ 4803786 (-)
trnas-gcu_34 NA coding upstream 191319 4805046 ~ 4805127 (-)
trnas-gcu_35 NA coding upstream 192728 4806455 ~ 4806536 (-)
G217960 NA non-coding downstream 4261 4565630 ~ 4566156 (-)
G217935 NA non-coding downstream 103977 4465983 ~ 4466440 (-)
G217905 NA non-coding downstream 307485 4262626 ~ 4262932 (-)
G217884 NA non-coding downstream 391499 4178696 ~ 4178918 (-)
G217828 NA non-coding downstream 665865 3904107 ~ 3904552 (-)
G217971 NA non-coding upstream 4889 4618616 ~ 4618865 (-)
G217976 NA non-coding upstream 146538 4760265 ~ 4762269 (-)
G217977 NA non-coding upstream 172666 4786393 ~ 4786618 (-)
G217988 NA non-coding upstream 276585 4890312 ~ 4890528 (-)
G217989 NA non-coding upstream 277291 4891018 ~ 4891491 (-)
G217837 NA other downstream 629088 3936010 ~ 3941329 (-)
G217780 chchd7,LOC102799933 other downstream 866060 3692952 ~ 3704357 (-)
f3a NA other downstream 1114373 3437802 ~ 3456044 (-)
LOC120552696 NA other downstream 1226712 3315418 ~ 3343705 (-)
svila svil other downstream 1434203 2988926 ~ 3136214 (-)
G218019 NA other upstream 413778 5027505 ~ 5036704 (-)
G218085 LOC107687935 other upstream 1086502 5700229 ~ 5700576 (-)
G218453 adarb2 other upstream 3581202 8194929 ~ 8195879 (-)
G218471 NA other upstream 3816737 8430464 ~ 8430930 (-)
prkdc prkdc other upstream 4184054 8797781 ~ 8851726 (-)

Expression


Co-expression Network